Wall clock time and date at job start Sun Mar 29 2020 23:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86804 * 119.99955 * 2 1 4 4 H 1.48501 * 109.47318 * 270.00267 * 3 2 1 5 5 H 1.48499 * 109.46931 * 30.00410 * 3 2 1 6 6 H 1.48499 * 109.47092 * 150.00002 * 3 2 1 7 7 C 1.40049 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00028 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99940 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99637 * 359.97438 * 9 7 2 11 11 N 1.34772 * 119.99932 * 180.02562 * 9 7 2 12 12 C 1.47424 * 125.65189 * 5.39651 * 11 9 7 13 13 C 1.55117 * 104.94371 * 155.96065 * 12 11 9 14 14 C 1.55160 * 101.48603 * 36.78001 * 13 12 11 15 15 C 1.47024 * 125.64540 * 185.35950 * 11 9 7 16 16 H 1.09004 * 109.88319 * 300.50822 * 15 11 9 17 17 C 1.52997 * 110.01566 * 61.60509 * 15 11 9 18 18 C 1.53178 * 109.54610 * 176.53523 * 17 15 11 19 19 C 1.53100 * 109.15398 * 183.24097 * 18 17 15 20 20 O 1.42901 * 109.48967 * 57.47544 * 19 18 17 21 21 C 1.42895 * 114.09848 * 298.88671 * 20 19 18 22 22 C 1.53090 * 109.41740 * 61.15769 * 21 20 19 23 23 H 0.97001 * 120.00001 * 0.02562 * 1 2 3 24 24 H 1.09003 * 110.36986 * 274.67702 * 12 11 9 25 25 H 1.09006 * 110.36512 * 36.88896 * 12 11 9 26 26 H 1.09003 * 110.93980 * 278.78674 * 13 12 11 27 27 H 1.09005 * 111.16663 * 154.86772 * 13 12 11 28 28 H 1.09000 * 110.72368 * 206.26071 * 14 13 12 29 29 H 1.09007 * 110.71708 * 83.16936 * 14 13 12 30 30 H 1.08995 * 109.54167 * 296.71394 * 17 15 11 31 31 H 1.09002 * 109.52130 * 303.05477 * 18 17 15 32 32 H 1.08993 * 109.52268 * 63.24463 * 18 17 15 33 33 H 1.08997 * 109.40801 * 297.48801 * 19 18 17 34 34 H 1.09004 * 109.48008 * 177.50630 * 19 18 17 35 35 H 1.09005 * 109.48324 * 301.17617 * 21 20 19 36 36 H 1.08999 * 109.48292 * 181.14198 * 21 20 19 37 37 H 1.08994 * 109.52755 * 182.48781 * 22 21 20 38 38 H 1.09002 * 109.57437 * 62.32596 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6526 0.7001 6 1 3.5382 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0583 -2.4805 -0.0017 11 7 1.9490 -3.6476 -0.0017 12 6 3.4114 -3.7954 0.1121 13 6 3.6264 -5.2248 0.6749 14 6 2.4966 -6.0117 -0.0404 15 6 1.3474 -4.9844 -0.1143 16 1 0.6507 -5.1479 0.7079 17 6 0.6151 -5.1181 -1.4510 18 6 0.0667 -6.5411 -1.5948 19 6 -0.5933 -6.6887 -2.9683 20 8 0.3585 -6.3842 -3.9898 21 6 0.8687 -5.0507 -3.9331 22 6 1.5894 -4.8378 -2.5993 23 1 -0.4850 0.8401 -0.0004 24 1 3.8796 -3.7023 -0.8679 25 1 3.8159 -3.0503 0.7972 26 1 3.4904 -5.2422 1.7563 27 1 4.6073 -5.6127 0.3999 28 1 2.2001 -6.8806 0.5471 29 1 2.8098 -6.3127 -1.0403 30 1 -0.2079 -4.4046 -1.4888 31 1 0.8837 -7.2571 -1.5058 32 1 -0.6696 -6.7283 -0.8133 33 1 -1.4365 -6.0018 -3.0407 34 1 -0.9464 -7.7123 -3.0938 35 1 0.0447 -4.3422 -4.0181 36 1 1.5689 -4.8942 -4.7537 37 1 1.9410 -3.8081 -2.5355 38 1 2.4387 -5.5176 -2.5306 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334880063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:28 Heat of formation + Delta-G solvation = -116.046027 kcal Electronic energy + Delta-G solvation = -20000.383639 eV Core-core repulsion = 17034.185445 eV Total energy + Delta-G solvation = -2966.198194 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18991 -39.46402 -37.63910 -34.77467 -34.61415 -32.14003 -31.86529 -29.66565 -28.15523 -25.54980 -24.50986 -23.68999 -22.53456 -21.15605 -19.79648 -18.46228 -17.66530 -17.35861 -16.91012 -16.58497 -16.01112 -15.81660 -15.67236 -15.10153 -14.80473 -14.38007 -14.05338 -13.68578 -13.48292 -13.29574 -13.04664 -12.93239 -12.78829 -12.69448 -12.47512 -12.29981 -12.03229 -11.84742 -11.66237 -11.52622 -11.38356 -11.01065 -10.91755 -10.52564 -9.79741 -9.00200 -8.30104 -6.85083 1.36150 1.37768 1.52696 2.21156 2.45635 2.88893 2.92535 3.57581 3.67419 3.80678 3.90069 4.01311 4.04119 4.09580 4.23907 4.29615 4.43276 4.52662 4.59356 4.68818 4.73432 4.83608 4.90956 4.93781 5.00670 5.04776 5.12463 5.13809 5.19713 5.28022 5.31987 5.46556 5.47934 5.73433 6.07440 6.19680 6.48715 6.86216 7.54257 8.48758 8.68066 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.007157 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.412225 B = 3911.202165 C = 4449.156681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.993 3.007 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.568 4.568 8 H 0.083 0.917 9 C 0.558 3.442 10 O -0.629 6.629 11 N -0.644 5.644 12 C 0.109 3.891 13 C -0.121 4.121 14 C -0.116 4.116 15 C 0.143 3.857 16 H 0.027 0.973 17 C -0.094 4.094 18 C -0.138 4.138 19 C 0.059 3.941 20 O -0.390 6.390 21 C 0.064 3.936 22 C -0.132 4.132 23 H 0.273 0.727 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.025 0.975 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.123 0.877 35 H 0.027 0.973 36 H 0.112 0.888 37 H 0.044 0.956 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.508 -12.137 -3.453 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.604 4.604 8 H 0.101 0.899 9 C 0.365 3.635 10 O -0.516 6.516 11 N -0.381 5.381 12 C -0.015 4.015 13 C -0.159 4.159 14 C -0.153 4.153 15 C 0.039 3.961 16 H 0.046 0.954 17 C -0.114 4.114 18 C -0.176 4.176 19 C -0.018 4.018 20 O -0.309 6.309 21 C -0.012 4.012 22 C -0.169 4.169 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.044 0.956 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.141 0.859 35 H 0.046 0.954 36 H 0.130 0.870 37 H 0.063 0.937 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.703 -12.107 -3.576 14.294 hybrid contribution -0.425 1.532 0.429 1.647 sum 6.278 -10.575 -3.147 12.694 Atomic orbital electron populations 1.70195 1.09461 1.28752 1.36796 1.26951 0.95491 1.04817 0.91298 0.85085 0.78872 0.75335 0.79441 1.18620 1.19765 1.17194 1.21411 0.94452 0.89983 1.54566 0.89879 1.18244 0.86246 0.83158 0.75895 1.90543 1.16140 1.87379 1.57528 1.48514 1.07231 1.04507 1.77819 1.22176 0.81532 0.97974 0.99798 1.22808 1.00007 0.93038 1.00029 1.22738 0.93542 0.96681 1.02384 1.21364 0.95558 0.84350 0.94840 0.95449 1.21366 0.97517 0.97037 0.95462 1.22181 1.01840 0.95555 0.98065 1.22707 0.90225 1.02140 0.86705 1.87843 1.60442 1.30393 1.52228 1.22571 0.97296 0.83409 0.97973 1.22045 0.99004 1.01431 0.94434 0.91725 0.92704 0.92599 0.91283 0.87131 0.88679 0.89046 0.95610 0.88693 0.90796 0.94813 0.85935 0.95431 0.86994 0.93747 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.33 11.83 21.84 0.26 -51.07 16 2 C 0.03 1.66 5.50 85.31 0.47 2.13 16 3 Si 0.99 41.75 29.56 68.60 2.03 43.78 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.57 -32.86 8.97 24.83 0.22 -32.64 16 8 H 0.08 4.37 6.79 -2.91 -0.02 4.35 16 9 C 0.56 33.11 7.53 86.36 0.65 33.76 16 10 O -0.63 -43.03 14.31 -4.31 -0.06 -43.09 16 11 N -0.64 -29.66 2.28 -792.67 -1.81 -31.47 16 12 C 0.11 3.85 6.42 86.93 0.56 4.40 16 13 C -0.12 -3.04 7.11 32.06 0.23 -2.82 16 14 C -0.12 -2.98 5.11 31.78 0.16 -2.82 16 15 C 0.14 5.49 2.67 45.34 0.12 5.61 16 16 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 17 C -0.09 -3.52 2.00 -10.67 -0.02 -3.54 16 18 C -0.14 -3.84 5.22 30.69 0.16 -3.67 16 19 C 0.06 1.55 6.84 72.02 0.49 2.05 16 20 O -0.39 -11.52 10.77 -148.98 -1.60 -13.12 16 21 C 0.06 1.99 6.84 72.01 0.49 2.49 16 22 C -0.13 -4.48 5.00 30.69 0.15 -4.32 16 23 H 0.27 15.46 8.29 -92.71 -0.77 14.69 16 24 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.06 2.08 7.37 -2.38 -0.02 2.06 16 26 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.09 2.09 5.46 -2.38 -0.01 2.07 16 30 H 0.03 1.26 7.13 -2.39 -0.02 1.24 16 31 H 0.09 2.17 6.88 -2.39 -0.02 2.16 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.04 1.82 7.67 -2.39 -0.02 1.80 16 38 H 0.09 2.60 6.06 -2.39 -0.01 2.58 16 Total: -1.00 -78.26 296.34 3.54 -74.72 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 1.04 Total: 19.63 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 3.69 Total: 0.63 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -1.55 Total: -82.54 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -1.67 Total: -56.21 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -78.26 3.54 -74.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334880063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.331 kcal (2) G-P(sol) polarization free energy of solvation -78.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds