Wall clock time and date at job start Sun Mar 29 2020 23:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 C 1.52995 * 115.54837 * 325.66806 * 3 2 1 5 5 C 1.52996 * 117.51754 * 111.37142 * 3 2 1 6 6 C 1.52996 * 60.00158 * 107.48247 * 5 3 2 7 7 H 1.09004 * 117.52248 * 107.48248 * 6 5 3 8 8 C 1.50707 * 117.49630 * 252.51044 * 6 5 3 9 9 O 1.21285 * 119.99856 * 68.62702 * 8 6 5 10 10 N 1.34773 * 119.99903 * 248.61595 * 8 6 5 11 11 C 1.47583 * 134.49244 * 179.97438 * 10 8 6 12 12 C 1.53940 * 86.11617 * 155.36379 * 11 10 8 13 13 O 1.42895 * 113.74445 * 269.15214 * 12 11 10 14 14 C 1.50702 * 113.74025 * 137.95239 * 12 11 10 15 15 H 1.08002 * 120.00299 * 1.92917 * 14 12 11 16 16 C 1.37884 * 119.99942 * 181.64476 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.47815 * 134.45820 * 359.87626 * 10 8 6 23 23 H 1.08999 * 109.47174 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47253 * 300.00074 * 1 2 3 25 25 H 1.09006 * 109.47265 * 60.00490 * 1 2 3 26 26 H 1.09009 * 109.47266 * 239.99829 * 2 1 3 27 27 H 1.09003 * 109.47019 * 120.00237 * 2 1 3 28 28 H 1.08997 * 109.47269 * 274.32747 * 4 3 2 29 29 H 1.08999 * 109.47151 * 34.33423 * 4 3 2 30 30 H 1.09004 * 109.47034 * 154.32889 * 4 3 2 31 31 H 1.09005 * 117.49908 * 359.97438 * 5 3 2 32 32 H 1.09000 * 117.49754 * 214.96703 * 5 3 2 33 33 H 1.09002 * 113.76762 * 41.06339 * 11 10 8 34 34 H 1.09002 * 113.87323 * 269.67799 * 11 10 8 35 35 H 0.96698 * 114.00515 * 178.07648 * 13 12 11 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.08996 * 113.77002 * 90.37316 * 22 10 8 38 38 H 1.08997 * 113.83175 * 318.91261 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4446 -0.7785 5 6 2.7418 1.9441 1.2636 6 6 3.5550 1.6562 0.0000 7 1 3.9428 2.5105 -0.5550 8 6 4.4307 0.4297 0.0006 9 8 3.9282 -0.6742 0.0009 10 7 5.7722 0.5595 0.0005 11 6 6.9030 -0.3888 0.0015 12 6 7.7202 0.7474 -0.6397 13 8 7.6909 0.7417 -2.0684 14 6 9.1133 0.8827 -0.0812 15 1 9.4613 0.1944 0.6748 16 6 9.9459 1.8816 -0.5397 17 7 9.5222 2.7198 -1.4603 18 14 11.6753 2.0445 0.1471 19 1 12.6112 1.2313 -0.6703 20 1 12.0921 3.4693 0.1059 21 1 11.6978 1.5626 1.5515 22 6 6.7010 1.7093 -0.0023 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.4778 2.4331 -1.8284 29 1 0.1339 2.1704 -0.6911 30 1 1.3351 3.4442 -0.3704 31 1 2.8399 1.2465 2.0954 32 1 2.5946 2.9881 1.5402 33 1 6.7564 -1.2480 -0.6530 34 1 7.2446 -0.6670 0.9985 35 1 8.1788 1.4710 -2.4747 36 1 10.1078 3.4228 -1.7826 37 1 6.9819 2.0496 0.9944 38 1 6.3933 2.5224 -0.6597 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335102185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:23 Heat of formation + Delta-G solvation = -33.678294 kcal Electronic energy + Delta-G solvation = -19178.808637 eV Core-core repulsion = 16216.182176 eV Total energy + Delta-G solvation = -2962.626461 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.91199 -38.41392 -36.38983 -33.90879 -32.22100 -32.08834 -28.84620 -28.04388 -25.63962 -25.22921 -23.63358 -22.99638 -19.97429 -18.86037 -17.98631 -17.34495 -16.42955 -15.45696 -15.02755 -14.87983 -14.36627 -14.17864 -13.97072 -13.80015 -13.12393 -12.88558 -12.62704 -12.36257 -12.04095 -11.91762 -11.74559 -11.61443 -11.55479 -11.07135 -11.05104 -10.97866 -10.75760 -10.51186 -10.28847 -9.88903 -9.60277 -9.50899 -8.98511 -8.74791 -8.38092 -7.78246 -6.39180 -4.49443 3.05988 3.14847 3.22782 3.25405 3.52976 4.02743 4.19057 4.73801 4.81185 4.87529 5.00536 5.12170 5.33940 5.45174 5.60986 5.63833 5.68767 5.77230 5.82246 5.84499 5.98184 6.01587 6.11913 6.19773 6.23129 6.32188 6.39385 6.48068 6.55278 6.66455 6.72297 6.75656 7.11273 7.62947 7.82791 8.53495 8.54371 8.85040 9.21824 9.43056 10.67523 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.043840 B = 0.004811 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.537040 B = 5818.340431 C = 5988.524086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.074 4.074 3 C -0.094 4.094 4 C -0.122 4.122 5 C -0.149 4.149 6 C -0.175 4.175 7 H 0.117 0.883 8 C 0.556 3.444 9 O -0.561 6.561 10 N -0.629 5.629 11 C 0.112 3.888 12 C 0.238 3.762 13 O -0.573 6.573 14 C -0.537 4.537 15 H 0.071 0.929 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.907 3.093 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.081 3.919 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.391 0.609 36 H 0.273 0.727 37 H 0.081 0.919 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.135 1.883 3.150 11.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.111 4.111 3 C -0.094 4.094 4 C -0.178 4.178 5 C -0.186 4.186 6 C -0.196 4.196 7 H 0.135 0.865 8 C 0.346 3.654 9 O -0.442 6.442 10 N -0.362 5.362 11 C -0.010 4.010 12 C 0.196 3.804 13 O -0.385 6.385 14 C -0.576 4.576 15 H 0.089 0.911 16 C -0.130 4.130 17 N -0.539 5.539 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.042 4.042 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.246 0.754 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.892 0.924 3.127 12.331 hybrid contribution 1.438 0.930 0.270 1.733 sum -10.454 1.854 3.396 11.147 Atomic orbital electron populations 1.21942 0.96894 1.01054 1.01226 1.21056 0.93564 0.92583 1.03929 1.21554 0.91040 0.97413 0.99417 1.21499 0.99614 0.97046 0.99688 1.23149 1.02231 1.02035 0.91215 1.22279 0.93296 0.99445 1.04575 0.86456 1.19216 0.80885 0.89172 0.76122 1.90617 1.73151 1.27626 1.52801 1.50182 1.03003 1.12535 1.70477 1.23421 0.82343 0.95260 0.99944 1.19863 0.91599 0.88712 0.80222 1.86060 1.77736 1.55550 1.19107 1.21521 0.97848 1.15021 1.23164 0.91089 1.25066 0.99170 0.94486 0.94291 1.69403 1.37276 1.17899 1.29276 0.86343 0.83238 0.77441 0.79571 1.20261 1.20936 1.19567 1.24300 0.87630 0.91335 1.00914 0.93096 0.93132 0.92686 0.90777 0.91088 0.92113 0.91125 0.92555 0.88617 0.88260 0.91244 0.89754 0.75403 0.91715 0.90115 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.92 37.16 0.33 -1.42 16 2 C -0.07 -1.09 4.36 -26.73 -0.12 -1.21 16 3 C -0.09 -1.31 2.47 -154.51 -0.38 -1.69 16 4 C -0.12 -1.37 9.49 37.15 0.35 -1.01 16 5 C -0.15 -2.03 9.53 -26.74 -0.25 -2.29 16 6 C -0.17 -2.89 5.66 -91.77 -0.52 -3.41 16 7 H 0.12 1.88 8.14 -51.93 -0.42 1.46 16 8 C 0.56 11.48 7.82 -10.98 -0.09 11.39 16 9 O -0.56 -12.63 13.83 5.55 0.08 -12.55 16 10 N -0.63 -13.57 3.61 -178.11 -0.64 -14.21 16 11 C 0.11 2.49 8.23 -2.97 -0.02 2.47 16 12 C 0.24 5.73 1.40 -90.84 -0.13 5.60 16 13 O -0.57 -14.82 13.48 -35.23 -0.48 -15.30 16 14 C -0.54 -13.49 8.61 -34.44 -0.30 -13.79 16 15 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.07 1.80 5.39 -17.82 -0.10 1.70 16 17 N -0.90 -22.66 11.19 55.43 0.62 -22.04 16 18 Si 0.91 19.39 29.54 -169.99 -5.02 14.37 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 C 0.08 1.76 8.02 -2.83 -0.02 1.73 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.57 6.45 -51.93 -0.33 0.23 16 26 H 0.07 1.26 7.26 -51.92 -0.38 0.89 16 27 H 0.07 1.16 7.02 -51.93 -0.36 0.80 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.69 5.58 -51.93 -0.29 0.40 16 30 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 31 H 0.10 1.35 8.05 -51.93 -0.42 0.93 16 32 H 0.10 1.13 8.05 -51.93 -0.42 0.71 16 33 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.08 1.72 8.09 -51.93 -0.42 1.30 16 35 H 0.39 10.15 6.59 45.56 0.30 10.45 16 36 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 37 H 0.08 1.68 8.09 -51.93 -0.42 1.26 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -27.47 310.93 -7.23 -34.70 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.23 Total: 12.28 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -1.24 Total: -1.92 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.02 Total: -36.26 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.40 Total: -27.85 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.47 -7.23 -34.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335102185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.021 kcal (2) G-P(sol) polarization free energy of solvation -27.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds