Wall clock time and date at job start Sun Mar 29 2020 23:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47172 * 2 1 4 4 C 1.50705 * 112.84741 * 297.07039 * 3 2 1 5 5 O 1.21275 * 119.99836 * 112.96096 * 4 3 2 6 6 N 1.34779 * 120.00048 * 292.96156 * 4 3 2 7 7 C 1.47058 * 136.05862 * 175.12434 * 6 4 3 8 8 C 1.53491 * 87.98998 * 207.08715 * 7 6 4 9 9 O 1.42897 * 114.20615 * 87.51893 * 8 7 6 10 10 C 1.50695 * 114.21080 * 220.34722 * 8 7 6 11 11 H 1.08001 * 119.99841 * 359.97438 * 10 8 7 12 12 C 1.37871 * 120.00356 * 180.02562 * 10 8 7 13 13 N 1.31515 * 120.00129 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00193 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47449 * 89.99663 * 14 12 10 16 16 H 1.48502 * 109.47296 * 209.99914 * 14 12 10 17 17 H 1.48498 * 109.47086 * 329.99440 * 14 12 10 18 18 C 1.47071 * 136.05584 * 355.07652 * 6 4 3 19 19 C 1.53779 * 113.69151 * 68.33847 * 3 2 1 20 20 C 1.53784 * 87.07956 * 89.13049 * 19 3 2 21 21 C 1.53779 * 113.61554 * 165.87869 * 3 2 1 22 22 H 1.09001 * 109.47150 * 175.30615 * 1 2 3 23 23 H 1.09006 * 109.47138 * 295.30618 * 1 2 3 24 24 H 1.09003 * 109.46904 * 55.30011 * 1 2 3 25 25 H 1.08999 * 109.47375 * 239.99641 * 2 1 3 26 26 H 1.08999 * 109.47219 * 119.99375 * 2 1 3 27 27 H 1.09005 * 113.47051 * 321.87177 * 7 6 4 28 28 H 1.09001 * 113.46763 * 92.30498 * 7 6 4 29 29 H 0.96698 * 113.99942 * 180.02562 * 9 8 7 30 30 H 0.97003 * 120.00338 * 180.02562 * 13 12 10 31 31 H 1.08996 * 113.46395 * 267.69294 * 18 6 4 32 32 H 1.09001 * 113.46824 * 38.13474 * 18 6 4 33 33 H 1.09003 * 113.61139 * 203.67163 * 19 3 2 34 34 H 1.09000 * 113.61836 * 334.58084 * 19 3 2 35 35 H 1.09005 * 113.61144 * 270.88125 * 20 19 3 36 36 H 1.08999 * 113.69098 * 139.99409 * 20 19 3 37 37 H 1.09007 * 113.61353 * 25.34419 * 21 3 2 38 38 H 1.08990 * 113.61755 * 156.16432 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6392 2.2049 -1.2367 5 8 0.8602 3.1305 -1.1525 6 7 2.1465 1.8580 -2.4362 7 6 1.9456 2.2759 -3.8318 8 6 2.3869 0.8694 -4.2597 9 8 1.3263 -0.0868 -4.3122 10 6 3.2767 0.8441 -5.4756 11 1 3.5487 1.7677 -5.9650 12 6 3.7428 -0.3580 -5.9640 13 7 3.4112 -1.4827 -5.3684 14 14 4.8464 -0.3892 -7.4708 15 1 6.2663 -0.2949 -7.0465 16 1 4.6348 -1.6579 -8.2132 17 1 4.5153 0.7602 -8.3507 18 6 3.1452 0.8956 -2.9253 19 6 1.7559 2.1984 1.3087 20 6 3.1056 1.6651 1.8176 21 6 3.5336 1.5679 0.3438 22 1 -0.3633 -1.0242 -0.0841 23 1 -0.3634 0.4393 0.9291 24 1 -0.3633 0.5850 -0.8449 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 0.9059 2.4969 -4.0734 28 1 2.6295 3.0617 -4.1523 29 1 1.6077 -0.9718 -4.5817 30 1 3.7394 -2.3285 -5.7117 31 1 4.1486 1.3138 -3.0044 32 1 3.1255 -0.0571 -2.3961 33 1 1.7310 3.2817 1.1907 34 1 0.8982 1.8117 1.8590 35 1 3.0332 0.6984 2.3160 36 1 3.6769 2.3952 2.3910 37 1 4.1110 0.6720 0.1150 38 1 3.9950 2.4780 -0.0393 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336073948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:53 Heat of formation + Delta-G solvation = -37.380242 kcal Electronic energy + Delta-G solvation = -19882.864959 eV Core-core repulsion = 16920.077969 eV Total energy + Delta-G solvation = -2962.786990 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38666 -38.58282 -36.63310 -33.97765 -32.19054 -32.17714 -28.92168 -26.39711 -25.47132 -25.06424 -24.69101 -22.51473 -20.62256 -18.92395 -17.85050 -17.25695 -16.23294 -15.70263 -15.30305 -15.11076 -14.60070 -14.18132 -13.77782 -13.48938 -13.11399 -12.80500 -12.42228 -12.28588 -12.18285 -11.93746 -11.56066 -11.46655 -11.26071 -11.10018 -11.07764 -10.97837 -10.70796 -10.48221 -10.25154 -10.16236 -9.98809 -9.48468 -9.01459 -8.75472 -8.33547 -7.78907 -6.40631 -4.50657 3.13501 3.21853 3.24506 3.27938 3.63650 4.17650 4.62602 4.67653 4.82185 4.86365 4.90313 5.22192 5.46589 5.51585 5.62456 5.67565 5.78054 5.90892 5.93977 5.96499 6.00556 6.04993 6.17271 6.23170 6.25794 6.41653 6.47796 6.50875 6.52266 6.58291 6.74001 6.76714 7.12805 7.62693 7.81299 8.52061 8.59969 8.86668 9.20787 9.49598 10.65888 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.031937 B = 0.006110 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.519733 B = 4581.223734 C = 4604.286518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.095 4.095 4 C 0.552 3.448 5 O -0.567 6.567 6 N -0.631 5.631 7 C 0.105 3.895 8 C 0.240 3.760 9 O -0.571 6.571 10 C -0.533 4.533 11 H 0.072 0.928 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.908 3.092 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.075 3.925 19 C -0.112 4.112 20 C -0.140 4.140 21 C -0.124 4.124 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.393 0.607 30 H 0.273 0.727 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.349 0.787 9.604 9.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.098 4.098 4 C 0.342 3.658 5 O -0.447 6.447 6 N -0.363 5.363 7 C -0.018 4.018 8 C 0.198 3.802 9 O -0.384 6.384 10 C -0.571 4.571 11 H 0.090 0.910 12 C -0.130 4.130 13 N -0.539 5.539 14 Si 0.735 3.265 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.195 1.195 18 C -0.048 4.048 19 C -0.150 4.150 20 C -0.178 4.178 21 C -0.162 4.162 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.249 0.751 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.522 1.623 10.020 10.164 hybrid contribution 1.053 -0.576 -0.952 1.532 sum 1.575 1.047 9.068 9.263 Atomic orbital electron populations 1.21711 0.95316 1.01568 1.01955 1.21274 0.96462 0.92689 1.02775 1.22054 0.97694 0.96824 0.93241 1.19791 0.80413 0.83085 0.82559 1.90606 1.37385 1.30993 1.85751 1.49683 1.41135 1.40144 1.05352 1.23311 1.01014 0.99102 0.78354 1.19531 0.84802 0.85232 0.90622 1.86045 1.35737 1.25288 1.91281 1.21443 1.29466 0.93834 1.12360 0.91018 1.25065 0.95644 0.95168 0.97139 1.69262 1.45635 0.98223 1.40773 0.86323 0.80312 0.77864 0.81987 1.20316 1.20885 1.19533 1.24172 0.92663 0.90994 0.96964 1.22828 0.97324 1.00552 0.94279 1.22831 0.97428 1.01325 0.96174 1.22917 0.94491 1.02644 0.96160 0.92591 0.92943 0.92371 0.90505 0.91377 0.91771 0.89979 0.75054 0.91614 0.90397 0.91782 0.89502 0.91097 0.90065 0.91409 0.90702 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.63 37.16 0.36 -1.91 16 2 C -0.09 -1.44 5.30 -26.73 -0.14 -1.58 16 3 C -0.10 -1.54 0.62 -154.84 -0.10 -1.64 16 4 C 0.55 11.41 6.00 -10.98 -0.07 11.35 16 5 O -0.57 -13.37 16.97 5.56 0.09 -13.27 16 6 N -0.63 -13.46 3.69 -185.22 -0.68 -14.15 16 7 C 0.10 2.32 8.03 -8.52 -0.07 2.26 16 8 C 0.24 5.73 1.58 -91.26 -0.14 5.58 16 9 O -0.57 -14.59 13.54 -35.23 -0.48 -15.07 16 10 C -0.53 -13.25 8.69 -34.44 -0.30 -13.55 16 11 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 12 C 0.07 1.77 5.40 -17.82 -0.10 1.68 16 13 N -0.90 -22.43 11.01 55.43 0.61 -21.82 16 14 Si 0.91 19.24 29.54 -169.99 -5.02 14.22 16 15 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 C 0.08 1.60 7.56 -8.51 -0.06 1.54 16 19 C -0.11 -1.58 6.74 -25.92 -0.17 -1.76 16 20 C -0.14 -1.63 7.73 -25.92 -0.20 -1.83 16 21 C -0.12 -1.74 7.02 -25.92 -0.18 -1.92 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.72 7.07 -51.93 -0.37 0.35 16 24 H 0.06 1.07 7.35 -51.93 -0.38 0.69 16 25 H 0.08 1.31 6.57 -51.93 -0.34 0.97 16 26 H 0.07 0.86 7.31 -51.93 -0.38 0.48 16 27 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 28 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 29 H 0.39 10.15 6.33 45.56 0.29 10.43 16 30 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 32 H 0.06 1.36 6.67 -51.93 -0.35 1.01 16 33 H 0.09 1.33 7.74 -51.93 -0.40 0.93 16 34 H 0.07 0.93 7.00 -51.93 -0.36 0.56 16 35 H 0.08 0.84 7.60 -51.93 -0.39 0.44 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 38 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 LS Contribution 306.94 15.07 4.63 4.63 Total: -1.00 -27.61 306.94 -7.21 -34.82 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -5.18 Total: 12.42 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.18 Total: -1.78 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.07 Total: -35.97 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.38 Total: -28.34 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.61 -7.21 -34.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336073948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.558 kcal (2) G-P(sol) polarization free energy of solvation -27.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds