Wall clock time and date at job start Sun Mar 29 2020 23:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47172 * 2 1 4 4 C 1.50705 * 112.84741 * 297.07039 * 3 2 1 5 5 O 1.21275 * 119.99836 * 112.96096 * 4 3 2 6 6 N 1.34779 * 120.00048 * 292.96156 * 4 3 2 7 7 C 1.47058 * 136.05862 * 175.12434 * 6 4 3 8 8 C 1.53491 * 87.98998 * 207.08715 * 7 6 4 9 9 O 1.42897 * 114.20615 * 87.51893 * 8 7 6 10 10 C 1.50695 * 114.21080 * 220.34722 * 8 7 6 11 11 H 1.08001 * 119.99841 * 359.97438 * 10 8 7 12 12 C 1.37871 * 120.00356 * 180.02562 * 10 8 7 13 13 N 1.31515 * 120.00129 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00193 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47449 * 89.99663 * 14 12 10 16 16 H 1.48502 * 109.47296 * 209.99914 * 14 12 10 17 17 H 1.48498 * 109.47086 * 329.99440 * 14 12 10 18 18 C 1.47071 * 136.05584 * 355.07652 * 6 4 3 19 19 C 1.53779 * 113.69151 * 68.33847 * 3 2 1 20 20 C 1.53784 * 87.07956 * 89.13049 * 19 3 2 21 21 C 1.53779 * 113.61554 * 165.87869 * 3 2 1 22 22 H 1.09001 * 109.47150 * 175.30615 * 1 2 3 23 23 H 1.09006 * 109.47138 * 295.30618 * 1 2 3 24 24 H 1.09003 * 109.46904 * 55.30011 * 1 2 3 25 25 H 1.08999 * 109.47375 * 239.99641 * 2 1 3 26 26 H 1.08999 * 109.47219 * 119.99375 * 2 1 3 27 27 H 1.09005 * 113.47051 * 321.87177 * 7 6 4 28 28 H 1.09001 * 113.46763 * 92.30498 * 7 6 4 29 29 H 0.96698 * 113.99942 * 180.02562 * 9 8 7 30 30 H 0.97003 * 120.00338 * 180.02562 * 13 12 10 31 31 H 1.08996 * 113.46395 * 267.69294 * 18 6 4 32 32 H 1.09001 * 113.46824 * 38.13474 * 18 6 4 33 33 H 1.09003 * 113.61139 * 203.67163 * 19 3 2 34 34 H 1.09000 * 113.61836 * 334.58084 * 19 3 2 35 35 H 1.09005 * 113.61144 * 270.88125 * 20 19 3 36 36 H 1.08999 * 113.69098 * 139.99409 * 20 19 3 37 37 H 1.09007 * 113.61353 * 25.34419 * 21 3 2 38 38 H 1.08990 * 113.61755 * 156.16432 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6392 2.2049 -1.2367 5 8 0.8602 3.1305 -1.1525 6 7 2.1465 1.8580 -2.4362 7 6 1.9456 2.2759 -3.8318 8 6 2.3869 0.8694 -4.2597 9 8 1.3263 -0.0868 -4.3122 10 6 3.2767 0.8441 -5.4756 11 1 3.5487 1.7677 -5.9650 12 6 3.7428 -0.3580 -5.9640 13 7 3.4112 -1.4827 -5.3684 14 14 4.8464 -0.3892 -7.4708 15 1 6.2663 -0.2949 -7.0465 16 1 4.6348 -1.6579 -8.2132 17 1 4.5153 0.7602 -8.3507 18 6 3.1452 0.8956 -2.9253 19 6 1.7559 2.1984 1.3087 20 6 3.1056 1.6651 1.8176 21 6 3.5336 1.5679 0.3438 22 1 -0.3633 -1.0242 -0.0841 23 1 -0.3634 0.4393 0.9291 24 1 -0.3633 0.5850 -0.8449 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 0.9059 2.4969 -4.0734 28 1 2.6295 3.0617 -4.1523 29 1 1.6077 -0.9718 -4.5817 30 1 3.7394 -2.3285 -5.7117 31 1 4.1486 1.3138 -3.0044 32 1 3.1255 -0.0571 -2.3961 33 1 1.7310 3.2817 1.1907 34 1 0.8982 1.8117 1.8590 35 1 3.0332 0.6984 2.3160 36 1 3.6769 2.3952 2.3910 37 1 4.1110 0.6720 0.1150 38 1 3.9950 2.4780 -0.0393 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336073948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:52 Heat of formation + Delta-G solvation = -55.379843 kcal Electronic energy + Delta-G solvation = -19883.645480 eV Core-core repulsion = 16920.077969 eV Total energy + Delta-G solvation = -2963.567511 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.85515 -40.16386 -38.26296 -35.87846 -34.12330 -33.36488 -30.65562 -27.95413 -26.94367 -26.49001 -26.23757 -23.75171 -22.19848 -20.48180 -19.57035 -18.88138 -17.69649 -17.42179 -16.93357 -16.61941 -16.06815 -15.95263 -15.05459 -14.92462 -14.83990 -14.49175 -13.92587 -13.75709 -13.57634 -13.41146 -13.33327 -12.83973 -12.77139 -12.67180 -12.38725 -12.25250 -12.23297 -12.17990 -11.88840 -11.29942 -11.26347 -11.13676 -10.78297 -10.54117 -10.14976 -9.56793 -8.27454 -6.44467 1.46596 1.50189 1.59106 1.65637 2.00839 2.40725 2.94330 3.39331 3.46379 3.66830 3.73667 3.85836 3.95068 4.14276 4.31076 4.40253 4.44839 4.50540 4.58768 4.73037 4.75627 4.79893 4.81419 4.90808 4.92915 5.00782 5.04501 5.10051 5.13145 5.24157 5.31119 5.34425 5.50941 5.72666 5.91118 6.60831 6.92009 7.18466 7.29914 7.49706 8.78643 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.031937 B = 0.006110 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.519733 B = 4581.223734 C = 4604.286518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.104 4.104 4 C 0.543 3.457 5 O -0.603 6.603 6 N -0.633 5.633 7 C 0.101 3.899 8 C 0.222 3.778 9 O -0.584 6.584 10 C -0.554 4.554 11 H 0.072 0.928 12 C 0.034 3.966 13 N -0.915 5.915 14 Si 0.970 3.030 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.094 3.906 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.125 4.125 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.015 0.985 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.389 0.611 30 H 0.277 0.723 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 0.100 11.030 11.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.107 4.107 4 C 0.335 3.665 5 O -0.486 6.486 6 N -0.365 5.365 7 C -0.022 4.022 8 C 0.180 3.820 9 O -0.397 6.397 10 C -0.592 4.592 11 H 0.090 0.910 12 C -0.166 4.166 13 N -0.556 5.556 14 Si 0.795 3.205 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.029 4.029 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.163 4.163 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.035 0.965 25 H 0.072 0.928 26 H 0.124 0.876 27 H 0.066 0.934 28 H 0.116 0.884 29 H 0.245 0.755 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.952 0.936 11.459 11.662 hybrid contribution 0.535 -0.338 -1.423 1.558 sum 2.487 0.598 10.036 10.357 Atomic orbital electron populations 1.21697 0.95681 1.01844 1.01053 1.21280 0.96107 0.91960 1.03380 1.22294 0.99815 0.97066 0.91518 1.20801 0.79386 0.82878 0.83431 1.90573 1.38866 1.32800 1.86352 1.49769 1.41279 1.40106 1.05354 1.23332 1.00413 0.98952 0.79515 1.19770 0.84939 0.85410 0.91833 1.86033 1.36896 1.25390 1.91426 1.21644 1.30124 0.94236 1.13189 0.91017 1.25741 0.96692 0.94770 0.99435 1.69319 1.46028 0.98596 1.41661 0.85367 0.78818 0.77565 0.78759 1.19564 1.20778 1.19652 1.23920 0.92649 0.91029 0.95306 1.22848 0.99646 0.99406 0.93202 1.22791 0.95074 1.02855 0.94681 1.22959 0.92666 1.02620 0.98060 0.91167 0.91081 0.96523 0.92828 0.87645 0.93384 0.88418 0.75510 0.91297 0.89384 0.91728 0.91258 0.89862 0.87625 0.89554 0.89828 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 9.63 71.98 0.69 -3.61 16 2 C -0.09 -2.57 5.30 30.60 0.16 -2.40 16 3 C -0.10 -3.23 0.62 -52.40 -0.03 -3.27 16 4 C 0.54 22.70 6.00 87.66 0.53 23.23 16 5 O -0.60 -29.16 16.97 -3.01 -0.05 -29.21 16 6 N -0.63 -27.40 3.69 -858.79 -3.17 -30.57 16 7 C 0.10 4.59 8.03 83.18 0.67 5.26 16 8 C 0.22 10.74 1.58 -11.21 -0.02 10.72 16 9 O -0.58 -30.69 13.54 -148.98 -2.02 -32.71 16 10 C -0.55 -27.59 8.69 25.60 0.22 -27.37 16 11 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 12 C 0.03 1.66 5.40 84.65 0.46 2.12 16 13 N -0.92 -45.49 11.01 21.45 0.24 -45.26 16 14 Si 0.97 38.89 29.54 68.60 2.03 40.92 16 15 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 16 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 18 C 0.09 4.00 7.56 83.18 0.63 4.62 16 19 C -0.11 -2.95 6.74 31.12 0.21 -2.74 16 20 C -0.12 -2.27 7.73 31.12 0.24 -2.02 16 21 C -0.13 -3.20 7.02 31.12 0.22 -2.98 16 22 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.07 1.80 7.07 -2.38 -0.02 1.79 16 24 H 0.02 0.60 7.35 -2.39 -0.02 0.58 16 25 H 0.05 1.78 6.57 -2.39 -0.02 1.77 16 26 H 0.11 2.25 7.31 -2.39 -0.02 2.23 16 27 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.10 4.07 8.10 -2.39 -0.02 4.05 16 29 H 0.39 20.57 6.33 -74.06 -0.47 20.10 16 30 H 0.28 13.00 8.31 -92.71 -0.77 12.22 16 31 H 0.09 3.55 8.10 -2.39 -0.02 3.53 16 32 H 0.06 2.73 6.67 -2.39 -0.02 2.71 16 33 H 0.07 2.05 7.74 -2.39 -0.02 2.04 16 34 H 0.08 1.94 7.00 -2.39 -0.02 1.92 16 35 H 0.11 1.60 7.60 -2.38 -0.02 1.58 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.99 8.10 -2.38 -0.02 1.97 16 38 H 0.07 1.96 8.09 -2.39 -0.02 1.94 16 Total: -1.00 -59.92 306.94 1.59 -58.34 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: 0.59 Total: 36.93 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 3.98 Total: 1.55 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.93 Total: -75.82 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: -2.07 Total: -61.91 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -59.92 1.59 -58.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336073948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.956 kcal (2) G-P(sol) polarization free energy of solvation -59.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds