Wall clock time and date at job start Sun Mar 29 2020 23:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86798 * 120.00140 * 2 1 4 4 H 1.48505 * 109.46776 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47190 * 300.00362 * 3 2 1 6 6 H 1.48500 * 109.47093 * 60.00771 * 3 2 1 7 7 C 1.40050 * 119.99329 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99342 * 180.02562 * 7 2 1 9 9 C 1.46378 * 120.00403 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99484 * 5.01158 * 9 7 2 11 11 N 1.34778 * 119.99875 * 185.00736 * 9 7 2 12 12 C 1.46931 * 120.60236 * 354.73859 * 11 9 7 13 13 C 1.53189 * 108.76970 * 233.57480 * 12 11 9 14 14 C 1.53041 * 109.33974 * 305.41841 * 13 12 11 15 15 C 1.53000 * 109.46138 * 181.35574 * 14 13 12 16 16 H 1.09001 * 110.80485 * 300.70242 * 15 14 13 17 17 C 1.54813 * 110.91106 * 177.07243 * 15 14 13 18 18 C 1.54096 * 104.18958 * 220.92011 * 17 15 14 19 19 O 1.43748 * 107.29394 * 357.97229 * 18 17 15 20 20 C 1.44416 * 107.00255 * 26.48540 * 19 18 17 21 21 C 1.53042 * 109.53861 * 61.35082 * 14 13 12 22 22 C 1.46924 * 120.62579 * 174.76129 * 11 9 7 23 23 H 0.97003 * 119.99818 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.56003 * 113.80907 * 12 11 9 25 25 H 1.09000 * 109.62051 * 353.38044 * 12 11 9 26 26 H 1.08998 * 109.49800 * 185.45018 * 13 12 11 27 27 H 1.08997 * 109.49830 * 65.38365 * 13 12 11 28 28 H 1.09001 * 109.46100 * 301.32602 * 14 13 12 29 29 H 1.09000 * 110.48410 * 339.60203 * 17 15 14 30 30 H 1.09004 * 110.48416 * 102.24119 * 17 15 14 31 31 H 1.09001 * 109.87971 * 117.39294 * 18 17 15 32 32 H 1.09001 * 109.88256 * 238.39370 * 18 17 15 33 33 H 1.08996 * 110.65710 * 201.48662 * 20 19 18 34 34 H 1.09002 * 110.60027 * 78.47164 * 20 19 18 35 35 H 1.08991 * 109.49688 * 58.58784 * 21 14 13 36 36 H 1.08999 * 109.49949 * 178.65238 * 21 14 13 37 37 H 1.08998 * 109.58859 * 6.60273 * 22 11 9 38 38 H 1.09000 * 109.58162 * 246.17469 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3462 -0.0006 5 1 1.8820 2.3964 -1.2124 6 1 1.8822 2.3963 1.2126 7 6 2.0069 -1.2130 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2749 -2.4806 -0.0005 10 8 0.0615 -2.4824 -0.0921 11 7 1.9450 -3.6456 0.1008 12 6 3.4141 -3.6664 0.0962 13 6 3.8900 -4.6351 -0.9909 14 6 3.2420 -6.0037 -0.7691 15 6 3.7415 -6.9827 -1.8335 16 1 3.4974 -6.6249 -2.8338 17 6 3.1627 -8.3989 -1.5969 18 6 4.3464 -9.3434 -1.8823 19 8 5.4568 -8.5260 -2.2886 20 6 5.2656 -7.2258 -1.6898 21 6 1.7206 -5.8723 -0.8716 22 6 1.2201 -4.9183 0.2174 23 1 -0.4850 0.8401 0.0004 24 1 3.7774 -4.0007 1.0681 25 1 3.7937 -2.6664 -0.1138 26 1 4.9744 -4.7337 -0.9410 27 1 3.6042 -4.2517 -1.9703 28 1 3.5086 -6.3758 0.2201 29 1 2.8286 -8.5069 -0.5650 30 1 2.3423 -8.5960 -2.2871 31 1 4.6046 -9.8972 -0.9797 32 1 4.0827 -10.0376 -2.6802 33 1 5.8282 -6.4661 -2.2323 34 1 5.5543 -7.2413 -0.6389 35 1 1.4549 -5.4770 -1.8519 36 1 1.2610 -6.8515 -0.7373 37 1 0.1521 -4.7437 0.0876 38 1 1.4045 -5.3551 1.1989 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372231008.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:40 Heat of formation + Delta-G solvation = -119.396038 kcal Electronic energy + Delta-G solvation = -19264.616176 eV Core-core repulsion = 16298.272714 eV Total energy + Delta-G solvation = -2966.343461 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.92766 -39.78664 -37.71332 -34.83245 -34.52013 -32.11082 -31.66169 -29.67855 -28.38967 -25.64181 -24.36587 -23.04209 -22.31140 -21.22029 -20.50878 -18.50677 -17.79593 -17.28821 -16.74713 -16.22538 -16.09021 -15.88706 -15.47228 -14.81958 -14.79568 -14.36035 -14.30077 -13.92243 -13.60466 -13.34368 -13.07970 -12.90146 -12.76220 -12.54607 -12.33755 -12.12416 -12.06832 -11.91045 -11.85257 -11.42235 -11.16498 -11.07996 -10.94369 -10.57241 -9.76235 -9.04573 -8.28945 -6.83359 1.39591 1.40003 1.57674 2.23986 2.46456 2.88992 3.05721 3.53542 3.59861 3.75309 3.89148 4.03309 4.19165 4.21687 4.34079 4.40014 4.45429 4.50688 4.58761 4.69675 4.85811 4.88380 4.89386 4.92830 4.97987 5.01699 5.13192 5.16985 5.18710 5.22070 5.27923 5.40960 5.56923 5.80843 5.97315 6.16884 6.44909 6.88493 7.44820 8.48036 8.68187 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.041553 B = 0.004827 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.683355 B = 5799.141971 C = 6297.311752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.996 3.004 4 H -0.244 1.244 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.570 4.570 8 H 0.095 0.905 9 C 0.538 3.462 10 O -0.636 6.636 11 N -0.646 5.646 12 C 0.116 3.884 13 C -0.123 4.123 14 C -0.062 4.062 15 C -0.110 4.110 16 H 0.073 0.927 17 C -0.149 4.149 18 C 0.043 3.957 19 O -0.406 6.406 20 C 0.051 3.949 21 C -0.113 4.113 22 C 0.115 3.885 23 H 0.273 0.727 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.750 -13.938 -1.541 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.166 1.166 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.606 4.606 8 H 0.113 0.887 9 C 0.344 3.656 10 O -0.524 6.524 11 N -0.382 5.382 12 C -0.007 4.007 13 C -0.161 4.161 14 C -0.081 4.081 15 C -0.129 4.129 16 H 0.092 0.908 17 C -0.187 4.187 18 C -0.033 4.033 19 O -0.325 6.325 20 C -0.025 4.025 21 C -0.152 4.152 22 C -0.009 4.009 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.114 -13.947 -1.716 17.916 hybrid contribution -0.524 0.915 0.079 1.057 sum 10.591 -13.032 -1.638 16.872 Atomic orbital electron populations 1.70212 1.09624 1.28770 1.36860 1.27016 0.95482 1.05016 0.91202 0.85003 0.79559 0.75490 0.78459 1.16637 1.19550 1.19369 1.21568 0.94847 0.89824 1.54343 0.88735 1.18699 0.86556 0.84429 0.75887 1.90529 1.16795 1.87540 1.57541 1.48065 1.06715 1.05395 1.78054 1.21631 0.79758 1.00732 0.98553 1.21974 1.01137 0.94692 0.98308 1.21008 0.93794 0.94232 0.99046 1.22683 0.95641 0.95181 0.99405 0.90835 1.23013 0.98639 0.93457 1.03592 1.23283 0.85430 0.93857 1.00748 1.88830 1.46050 1.24322 1.73344 1.23725 0.95057 0.84727 0.98969 1.21860 0.96588 0.99038 0.97691 1.21281 0.96390 0.84793 0.98402 0.91703 0.91931 0.90408 0.88513 0.93462 0.89620 0.89451 0.90151 0.91442 0.89280 0.88464 0.90889 0.94120 0.89264 0.93732 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.18 11.84 21.84 0.26 -50.93 16 2 C 0.03 1.54 5.50 85.30 0.47 2.01 16 3 Si 1.00 40.96 29.56 68.60 2.03 42.99 16 4 H -0.24 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.57 -32.35 8.86 24.83 0.22 -32.13 16 8 H 0.09 4.77 5.69 -2.91 -0.02 4.76 16 9 C 0.54 31.85 7.62 86.36 0.66 32.50 16 10 O -0.64 -43.71 14.45 -4.31 -0.06 -43.77 16 11 N -0.65 -29.54 2.97 -823.98 -2.45 -31.99 16 12 C 0.12 4.07 6.31 86.36 0.55 4.61 16 13 C -0.12 -3.30 5.21 30.67 0.16 -3.14 16 14 C -0.06 -1.46 1.55 -10.77 -0.02 -1.47 16 15 C -0.11 -2.20 2.65 -9.49 -0.03 -2.23 16 16 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 17 C -0.15 -2.49 5.63 31.58 0.18 -2.31 16 18 C 0.04 0.72 7.70 72.35 0.56 1.28 16 19 O -0.41 -8.99 11.52 -148.98 -1.72 -10.71 16 20 C 0.05 0.96 6.26 72.67 0.45 1.42 16 21 C -0.11 -3.32 5.19 30.67 0.16 -3.16 16 22 C 0.11 4.49 6.44 86.36 0.56 5.04 16 23 H 0.27 15.31 8.29 -92.71 -0.77 14.54 16 24 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 25 H 0.08 2.93 5.37 -2.39 -0.01 2.92 16 26 H 0.10 1.96 7.31 -2.39 -0.02 1.95 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 1.31 7.68 -2.39 -0.02 1.29 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.71 8.03 -2.39 -0.02 1.69 16 34 H 0.07 1.21 8.04 -2.39 -0.02 1.19 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 2.11 7.21 -2.39 -0.02 2.09 16 37 H 0.04 2.07 6.99 -2.39 -0.02 2.05 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -77.30 298.48 3.01 -74.29 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 1.04 Total: 17.69 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 3.92 Total: 2.43 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -2.19 Total: -82.92 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -1.78 Total: -54.48 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -77.30 3.01 -74.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372231008.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.110 kcal (2) G-P(sol) polarization free energy of solvation -77.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds