Wall clock time and date at job start Sun Mar 29 2020 23:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86809 * 119.99789 * 2 1 4 4 H 1.48502 * 109.46834 * 269.99818 * 3 2 1 5 5 H 1.48493 * 109.46993 * 30.00051 * 3 2 1 6 6 H 1.48499 * 109.46980 * 150.00403 * 3 2 1 7 7 C 1.37879 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00198 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99749 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47037 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47253 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99768 * 180.02562 * 11 10 9 13 13 O 1.21608 * 120.00553 * 359.97438 * 12 11 10 14 14 C 1.47106 * 119.99582 * 179.97438 * 12 11 10 15 15 C 1.32997 * 120.00135 * 180.02562 * 14 12 11 16 16 C 1.50697 * 120.00105 * 179.97438 * 15 14 12 17 17 C 1.53175 * 109.54085 * 120.00210 * 16 15 14 18 18 C 1.53092 * 109.16344 * 176.84900 * 17 16 15 19 19 O 1.42905 * 109.41215 * 302.38824 * 18 17 16 20 20 C 1.42905 * 114.09831 * 61.16158 * 19 18 17 21 21 C 1.53098 * 109.41155 * 298.83847 * 20 19 18 22 22 H 0.96998 * 120.00540 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47059 * 60.00420 * 9 7 2 24 24 H 1.08998 * 109.47464 * 300.00325 * 9 7 2 25 25 H 1.08997 * 109.47386 * 60.00221 * 10 9 7 26 26 H 1.09004 * 109.47576 * 300.00193 * 10 9 7 27 27 H 0.96993 * 119.99712 * 0.02562 * 11 10 9 28 28 H 1.07994 * 120.00274 * 359.97438 * 14 12 11 29 29 H 1.08006 * 119.99597 * 0.02562 * 15 14 12 30 30 H 1.08996 * 109.54186 * 359.82575 * 16 15 14 31 31 H 1.09004 * 109.52714 * 56.93920 * 17 16 15 32 32 H 1.09001 * 109.57654 * 296.78651 * 17 16 15 33 33 H 1.08997 * 109.48111 * 182.40965 * 18 17 16 34 34 H 1.09000 * 109.48212 * 62.37239 * 18 17 16 35 35 H 1.09000 * 109.47932 * 58.81878 * 20 19 18 36 36 H 1.08993 * 109.48024 * 178.86013 * 20 19 18 37 37 H 1.08996 * 109.52270 * 297.70307 * 21 20 19 38 38 H 1.08995 * 109.57012 * 177.54155 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0979 -0.0007 13 8 3.4030 -6.0979 -0.0003 14 6 1.4514 -7.3719 -0.0008 15 6 2.1164 -8.5237 0.0001 16 6 1.3629 -9.8288 0.0007 17 6 1.7323 -10.6341 -1.2488 18 6 1.0234 -11.9902 -1.2004 19 8 1.3937 -12.6772 -0.0033 20 6 1.0306 -11.9935 1.1979 21 6 1.7398 -10.6375 1.2458 22 1 -0.4851 0.8400 -0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6043 0.8894 26 1 2.8721 -3.6043 -0.8905 27 1 0.5430 -4.9308 -0.0019 28 1 0.3714 -7.3720 -0.0007 29 1 3.1964 -8.5236 0.0013 30 1 0.2910 -9.6309 0.0033 31 1 2.8111 -10.7878 -1.2775 32 1 1.4181 -10.0905 -2.1398 33 1 1.3162 -12.5845 -2.0659 34 1 -0.0557 -11.8370 -1.2127 35 1 -0.0484 -11.8402 1.2170 36 1 1.3286 -12.5901 2.0600 37 1 2.8186 -10.7912 1.2676 38 1 1.4309 -10.0953 2.1395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492415810.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:47 Heat of formation + Delta-G solvation = -117.472060 kcal Electronic energy + Delta-G solvation = -17700.219216 eV Core-core repulsion = 14733.959184 eV Total energy + Delta-G solvation = -2966.260031 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.78805 -40.20475 -36.79209 -36.20610 -34.83044 -32.67771 -32.00887 -31.37308 -27.36761 -26.01821 -24.44579 -23.41119 -22.44278 -21.09870 -20.54446 -18.67726 -18.18617 -16.99467 -16.90917 -16.83691 -16.46475 -16.43384 -15.66803 -15.33389 -14.97426 -14.93492 -14.70545 -14.32236 -13.63053 -13.29834 -13.24175 -13.18477 -12.96205 -12.54544 -12.28321 -12.25981 -12.04387 -11.91724 -11.70214 -11.50139 -11.28758 -10.91780 -10.62365 -10.46323 -10.44713 -9.97151 -8.25865 -6.36564 0.36617 1.40870 1.41371 1.52938 2.27693 2.30461 2.46118 3.00987 3.08803 3.57636 3.77726 3.88961 4.09112 4.09201 4.17528 4.34537 4.43380 4.45855 4.48653 4.57272 4.74437 4.77489 4.82384 4.83339 4.91069 5.07382 5.15292 5.22203 5.27094 5.39536 5.49252 5.51926 5.55647 5.77036 6.14303 6.30109 6.64313 6.76568 7.26601 7.32883 8.86063 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.065758 B = 0.002770 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.703374 B =10106.036288 C =10192.822868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.712 5.712 12 C 0.530 3.470 13 O -0.602 6.602 14 C -0.212 4.212 15 C -0.049 4.049 16 C -0.063 4.063 17 C -0.148 4.148 18 C 0.060 3.940 19 O -0.406 6.406 20 C 0.060 3.940 21 C -0.148 4.148 22 H 0.267 0.733 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.412 0.588 28 H 0.159 0.841 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.365 -23.854 -0.006 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.015 3.985 11 N -0.362 5.362 12 C 0.321 3.679 13 O -0.486 6.486 14 C -0.233 4.233 15 C -0.069 4.069 16 C -0.081 4.081 17 C -0.186 4.186 18 C -0.017 4.017 19 O -0.326 6.326 20 C -0.017 4.017 21 C -0.186 4.186 22 H 0.075 0.925 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.248 0.752 28 H 0.176 0.824 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.587 -23.877 -0.002 23.930 hybrid contribution -0.044 1.586 -0.008 1.587 sum -1.631 -22.291 -0.009 22.351 Atomic orbital electron populations 1.70048 1.07530 1.28074 1.50918 1.25875 0.95817 1.03110 0.94339 0.85438 0.78604 0.78401 0.78570 1.19697 1.20377 1.19136 1.21473 0.93572 0.92000 1.51701 0.92402 1.19127 0.94179 0.91680 0.96420 1.21230 0.95123 0.82434 0.99690 1.46070 1.11142 1.05582 1.73394 1.19367 0.87240 0.85735 0.75568 1.90727 1.15946 1.88673 1.53216 1.22677 1.01519 0.90282 1.08777 1.23730 1.00170 0.93764 0.89257 1.20497 1.00410 0.91062 0.96127 1.22213 1.01817 0.96719 0.97826 1.22702 0.98917 0.92436 0.87620 1.87917 1.82375 1.47464 1.14807 1.22701 0.98976 0.92483 0.87510 1.22213 1.01794 0.96694 0.97869 0.92465 0.97216 0.97222 0.93688 0.93677 0.75152 0.82386 0.87536 0.88244 0.91628 0.89682 0.87743 0.91682 0.91683 0.87740 0.91622 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.40 13.29 21.45 0.28 -54.12 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -31.01 9.11 25.60 0.23 -30.78 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.14 6.15 5.61 86.38 0.48 6.64 16 11 N -0.71 -25.36 5.55 -466.71 -2.59 -27.95 16 12 C 0.53 18.42 7.76 86.57 0.67 19.09 16 13 O -0.60 -26.05 16.22 -4.06 -0.07 -26.11 16 14 C -0.21 -4.99 9.64 23.43 0.23 -4.77 16 15 C -0.05 -1.04 8.36 24.52 0.20 -0.83 16 16 C -0.06 -0.91 2.57 -11.42 -0.03 -0.94 16 17 C -0.15 -2.03 5.40 30.68 0.17 -1.86 16 18 C 0.06 0.73 6.84 72.01 0.49 1.22 16 19 O -0.41 -6.70 10.77 -148.98 -1.60 -8.31 16 20 C 0.06 0.73 6.84 72.01 0.49 1.22 16 21 C -0.15 -2.03 5.41 30.69 0.17 -1.86 16 22 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 23 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.41 12.30 8.46 -92.71 -0.78 11.51 16 28 H 0.16 2.61 7.87 -2.91 -0.02 2.58 16 29 H 0.11 2.71 7.49 -2.91 -0.02 2.69 16 30 H 0.10 1.14 7.81 -2.39 -0.02 1.12 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -69.67 320.16 2.02 -67.65 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.25 Total: 13.69 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 3.72 Total: -10.64 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -2.31 Total: -82.07 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.67 Total: -34.42 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -69.67 2.02 -67.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492415810.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.824 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds