Wall clock time and date at job start Sun Mar 29 2020 23:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00034 * 2 1 4 4 H 1.48499 * 109.47291 * 239.99825 * 3 2 1 5 5 H 1.48500 * 109.47205 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46679 * 119.99764 * 3 2 1 7 7 C 1.37879 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00389 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46708 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00043 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99996 * 179.97438 * 11 10 9 14 14 C 1.47577 * 134.49445 * 179.97438 * 13 11 10 15 15 C 1.53947 * 86.11808 * 155.36134 * 14 13 11 16 16 C 1.52999 * 113.74413 * 137.95390 * 15 14 13 17 17 H 1.08994 * 110.74781 * 299.90926 * 16 15 14 18 18 C 1.55301 * 110.84757 * 176.20814 * 16 15 14 19 19 C 1.54945 * 100.94080 * 207.67514 * 18 16 15 20 20 O 1.43645 * 105.13541 * 36.44771 * 19 18 16 21 21 C 1.43240 * 109.97179 * 335.57081 * 20 19 18 22 22 C 1.47812 * 134.45170 * 359.86725 * 13 11 10 23 23 H 0.96999 * 120.00382 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.46671 * 59.99681 * 9 7 2 25 25 H 1.09001 * 109.46851 * 300.00083 * 9 7 2 26 26 H 1.08990 * 109.47449 * 59.99940 * 10 9 7 27 27 H 1.09000 * 109.46623 * 299.99721 * 10 9 7 28 28 H 1.09003 * 113.76680 * 41.06102 * 14 13 11 29 29 H 1.09003 * 113.76957 * 269.66498 * 14 13 11 30 30 H 1.09004 * 113.73585 * 269.15672 * 15 14 13 31 31 H 1.09002 * 111.12094 * 89.75672 * 18 16 15 32 32 H 1.08995 * 111.12749 * 325.59813 * 18 16 15 33 33 H 1.09004 * 110.31131 * 277.53032 * 19 18 16 34 34 H 1.09001 * 110.30800 * 155.36466 * 19 18 16 35 35 H 1.09001 * 109.82775 * 121.22303 * 21 20 19 36 36 H 1.08999 * 109.82784 * 242.19723 * 21 20 19 37 37 H 1.09005 * 113.77125 * 90.38325 * 22 13 11 38 38 H 1.08996 * 113.84024 * 318.91008 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4918 -4.9672 -0.0033 12 8 0.2789 -4.9672 -0.0041 13 7 2.1657 -6.1344 -0.0039 14 6 1.7711 -7.5565 -0.0051 15 6 3.1445 -7.8288 -0.6451 16 6 3.8548 -9.0599 -0.0788 17 1 4.0287 -8.9472 0.9912 18 6 5.1851 -9.3268 -0.8345 19 6 5.3227 -10.8597 -0.6551 20 8 3.9815 -11.3682 -0.7322 21 6 3.0481 -10.3431 -0.3723 22 6 3.5970 -6.5033 -0.0056 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8880 26 1 2.8713 -3.6048 0.8889 27 1 2.8726 -3.6039 -0.8910 28 1 0.9291 -7.7782 -0.6608 29 1 1.6589 -7.9821 0.9921 30 1 3.1323 -7.8089 -1.7349 31 1 6.0160 -8.8001 -0.3650 32 1 5.0987 -9.0607 -1.8879 33 1 5.7592 -11.0892 0.3170 34 1 5.9335 -11.2806 -1.4538 35 1 2.3579 -10.1654 -1.1970 36 1 2.4941 -10.6431 0.5172 37 1 4.0221 -6.6192 0.9914 38 1 4.2103 -5.8858 -0.6618 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589716546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:50 Heat of formation + Delta-G solvation = -62.260010 kcal Electronic energy + Delta-G solvation = -18303.493896 eV Core-core repulsion = 15339.628039 eV Total energy + Delta-G solvation = -2963.865857 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57983 -39.17374 -37.41397 -33.45368 -32.96609 -31.08992 -30.07786 -28.20597 -26.48789 -25.25765 -23.14544 -22.42543 -21.17736 -20.27712 -18.58892 -17.08050 -16.81594 -16.55267 -15.88818 -15.40456 -15.08341 -14.89283 -14.41491 -14.13907 -13.82331 -13.43774 -12.91942 -12.80902 -12.42582 -12.20222 -11.94989 -11.81157 -11.78014 -11.32832 -11.13404 -11.06429 -10.91573 -10.65274 -10.59818 -9.95972 -9.83559 -9.66312 -9.18068 -9.00062 -8.48672 -8.31743 -5.96235 -4.00996 3.01939 3.22666 3.33945 3.38599 3.40387 3.54478 3.85021 4.29357 4.37520 4.45963 4.68714 4.76655 4.84503 4.96607 5.01422 5.11396 5.20480 5.35127 5.38166 5.38393 5.41538 5.42570 5.52902 5.56099 5.63712 5.80930 6.02508 6.09471 6.23099 6.31361 6.66266 6.89492 7.73397 7.85465 7.98425 8.06989 8.37825 8.73454 9.07105 9.62396 11.14742 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.050822 B = 0.003433 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.811430 B = 8153.700208 C = 8617.490702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.122 4.122 11 C 0.532 3.468 12 O -0.532 6.532 13 N -0.656 5.656 14 C 0.107 3.893 15 C -0.114 4.114 16 C -0.113 4.113 17 H 0.090 0.910 18 C -0.151 4.151 19 C 0.050 3.950 20 O -0.387 6.387 21 C 0.055 3.945 22 C 0.110 3.890 23 H 0.262 0.738 24 H 0.024 0.976 25 H 0.023 0.977 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.315 -20.808 -0.605 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.162 4.162 11 C 0.324 3.676 12 O -0.407 6.407 13 N -0.394 5.394 14 C -0.016 4.016 15 C -0.133 4.133 16 C -0.133 4.133 17 H 0.109 0.891 18 C -0.189 4.189 19 C -0.027 4.027 20 O -0.307 6.307 21 C -0.021 4.021 22 C -0.013 4.013 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.288 -20.654 -0.661 23.546 hybrid contribution 0.566 1.170 0.177 1.311 sum 11.854 -19.484 -0.484 22.812 Atomic orbital electron populations 1.69985 1.06072 1.26732 1.50040 1.25028 0.94835 0.99236 0.95278 0.86639 0.79538 0.83125 0.78543 1.20228 1.21258 1.20243 1.21175 0.92870 0.90986 1.51599 0.92666 1.18913 0.93185 0.89350 0.98624 1.21816 1.00636 0.91432 1.02305 1.21376 0.88011 0.84194 0.73986 1.90680 1.14298 1.86750 1.49017 1.50272 1.08132 1.05016 1.76002 1.23081 0.96996 0.81193 1.00333 1.23203 0.95777 0.93185 1.01109 1.22743 0.95055 0.94530 1.00935 0.89119 1.23333 0.97569 0.96152 1.01799 1.23381 0.84775 0.93136 1.01373 1.88406 1.15593 1.36551 1.90107 1.23187 0.92166 0.86283 1.00510 1.23205 0.84417 0.93166 1.00527 0.92859 0.95804 0.95852 0.90408 0.90400 0.90268 0.90288 0.87713 0.89588 0.89975 0.92211 0.89807 0.90867 0.91253 0.89935 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.12 -2.58 5.39 -27.88 -0.15 -2.73 16 11 C 0.53 10.89 8.06 -10.99 -0.09 10.80 16 12 O -0.53 -13.29 16.71 5.55 0.09 -13.19 16 13 N -0.66 -9.80 3.61 -178.13 -0.64 -10.44 16 14 C 0.11 1.21 8.05 -2.97 -0.02 1.19 16 15 C -0.11 -0.95 3.20 -89.68 -0.29 -1.24 16 16 C -0.11 -0.76 2.76 -88.68 -0.24 -1.00 16 17 H 0.09 0.56 8.00 -51.93 -0.42 0.14 16 18 C -0.15 -0.88 6.62 -24.49 -0.16 -1.04 16 19 C 0.05 0.33 7.78 38.18 0.30 0.63 16 20 O -0.39 -3.72 11.36 -35.23 -0.40 -4.12 16 21 C 0.06 0.43 7.06 37.88 0.27 0.70 16 22 C 0.11 1.10 8.19 -2.83 -0.02 1.07 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.10 0.88 8.06 -51.93 -0.42 0.46 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.49 7.98 -51.93 -0.41 0.07 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.57 7.81 -51.93 -0.41 0.16 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.70 8.00 -51.93 -0.42 0.28 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 317.08 15.07 4.78 4.78 Total: -1.00 -35.45 317.08 -7.66 -43.11 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -6.25 Total: -5.31 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -0.94 Total: -4.60 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.09 Total: -37.41 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.31 Total: -17.32 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.45 -7.66 -43.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589716546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.154 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds