Wall clock time and date at job start Sun Mar 29 2020 23:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00034 * 2 1 4 4 H 1.48499 * 109.47291 * 239.99825 * 3 2 1 5 5 H 1.48500 * 109.47205 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46679 * 119.99764 * 3 2 1 7 7 C 1.37879 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00389 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46708 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00043 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99996 * 179.97438 * 11 10 9 14 14 C 1.47577 * 134.49445 * 179.97438 * 13 11 10 15 15 C 1.53947 * 86.11808 * 155.36134 * 14 13 11 16 16 C 1.52999 * 113.74413 * 137.95390 * 15 14 13 17 17 H 1.08994 * 110.74781 * 299.90926 * 16 15 14 18 18 C 1.55301 * 110.84757 * 176.20814 * 16 15 14 19 19 C 1.54945 * 100.94080 * 207.67514 * 18 16 15 20 20 O 1.43645 * 105.13541 * 36.44771 * 19 18 16 21 21 C 1.43240 * 109.97179 * 335.57081 * 20 19 18 22 22 C 1.47812 * 134.45170 * 359.86725 * 13 11 10 23 23 H 0.96999 * 120.00382 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.46671 * 59.99681 * 9 7 2 25 25 H 1.09001 * 109.46851 * 300.00083 * 9 7 2 26 26 H 1.08990 * 109.47449 * 59.99940 * 10 9 7 27 27 H 1.09000 * 109.46623 * 299.99721 * 10 9 7 28 28 H 1.09003 * 113.76680 * 41.06102 * 14 13 11 29 29 H 1.09003 * 113.76957 * 269.66498 * 14 13 11 30 30 H 1.09004 * 113.73585 * 269.15672 * 15 14 13 31 31 H 1.09002 * 111.12094 * 89.75672 * 18 16 15 32 32 H 1.08995 * 111.12749 * 325.59813 * 18 16 15 33 33 H 1.09004 * 110.31131 * 277.53032 * 19 18 16 34 34 H 1.09001 * 110.30800 * 155.36466 * 19 18 16 35 35 H 1.09001 * 109.82775 * 121.22303 * 21 20 19 36 36 H 1.08999 * 109.82784 * 242.19723 * 21 20 19 37 37 H 1.09005 * 113.77125 * 90.38325 * 22 13 11 38 38 H 1.08996 * 113.84024 * 318.91008 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4918 -4.9672 -0.0033 12 8 0.2789 -4.9672 -0.0041 13 7 2.1657 -6.1344 -0.0039 14 6 1.7711 -7.5565 -0.0051 15 6 3.1445 -7.8288 -0.6451 16 6 3.8548 -9.0599 -0.0788 17 1 4.0287 -8.9472 0.9912 18 6 5.1851 -9.3268 -0.8345 19 6 5.3227 -10.8597 -0.6551 20 8 3.9815 -11.3682 -0.7322 21 6 3.0481 -10.3431 -0.3723 22 6 3.5970 -6.5033 -0.0056 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8880 26 1 2.8713 -3.6048 0.8889 27 1 2.8726 -3.6039 -0.8910 28 1 0.9291 -7.7782 -0.6608 29 1 1.6589 -7.9821 0.9921 30 1 3.1323 -7.8089 -1.7349 31 1 6.0160 -8.8001 -0.3650 32 1 5.0987 -9.0607 -1.8879 33 1 5.7592 -11.0892 0.3170 34 1 5.9335 -11.2806 -1.4538 35 1 2.3579 -10.1654 -1.1970 36 1 2.4941 -10.6431 0.5172 37 1 4.0221 -6.6192 0.9914 38 1 4.2103 -5.8858 -0.6618 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589716546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:50 Heat of formation + Delta-G solvation = -87.109086 kcal Electronic energy + Delta-G solvation = -18304.571433 eV Core-core repulsion = 15339.628039 eV Total energy + Delta-G solvation = -2964.943394 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52645 -40.13167 -38.70023 -35.58958 -33.78232 -32.99871 -30.85193 -29.31260 -27.68509 -26.84442 -24.19220 -23.27094 -22.56622 -21.07368 -19.89664 -18.78045 -17.75123 -17.37566 -17.29867 -16.62274 -16.47461 -16.30530 -15.82421 -15.16291 -14.69006 -14.38287 -14.06886 -14.05069 -13.94333 -13.59550 -13.27794 -12.81658 -12.74187 -12.63660 -12.51836 -12.36695 -11.97074 -11.95180 -11.67665 -11.62121 -11.35983 -11.33417 -10.64027 -10.57939 -10.41824 -9.69389 -8.19351 -6.34416 1.41312 1.46440 1.54232 1.64643 1.88125 2.42206 2.98907 3.13250 3.16410 3.60747 3.73695 3.81196 4.08404 4.18082 4.34260 4.38585 4.40414 4.43595 4.48633 4.51878 4.53834 4.64618 4.69128 4.87363 4.90649 4.94048 5.01603 5.10302 5.15157 5.24760 5.38780 5.46559 5.58566 5.82003 6.12117 6.14675 6.66910 6.84422 7.21801 7.36182 8.93371 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.050822 B = 0.003433 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.811430 B = 8153.700208 C = 8617.490702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.109 4.109 11 C 0.527 3.473 12 O -0.597 6.597 13 N -0.657 5.657 14 C 0.097 3.903 15 C -0.089 4.089 16 C -0.103 4.103 17 H 0.104 0.896 18 C -0.145 4.145 19 C 0.042 3.958 20 O -0.414 6.414 21 C 0.050 3.950 22 C 0.108 3.892 23 H 0.263 0.737 24 H -0.020 1.020 25 H -0.020 1.020 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.858 -21.182 -0.361 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.095 0.905 9 C 0.005 3.995 10 C -0.149 4.149 11 C 0.318 3.682 12 O -0.478 6.478 13 N -0.392 5.392 14 C -0.025 4.025 15 C -0.108 4.108 16 C -0.122 4.122 17 H 0.123 0.877 18 C -0.182 4.182 19 C -0.034 4.034 20 O -0.334 6.334 21 C -0.026 4.026 22 C -0.013 4.013 23 H 0.072 0.928 24 H -0.001 1.001 25 H -0.002 1.002 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.914 -21.095 -0.419 25.838 hybrid contribution -0.526 1.140 0.096 1.259 sum 14.388 -19.955 -0.322 24.603 Atomic orbital electron populations 1.70177 1.08425 1.27975 1.51290 1.26187 0.95749 1.04110 0.94496 0.85329 0.78022 0.77043 0.79573 1.18539 1.21320 1.18555 1.21671 0.94003 0.91485 1.51118 0.90490 1.18690 0.93689 0.92579 0.94535 1.21539 0.99157 0.89797 1.04387 1.21127 0.87181 0.85728 0.74117 1.90647 1.16811 1.87884 1.52453 1.50296 1.10932 1.04818 1.73197 1.23428 0.98640 0.78818 1.01611 1.22991 0.93337 0.93426 1.01042 1.22668 0.95090 0.92718 1.01754 0.87730 1.23331 0.97451 0.95577 1.01870 1.23570 0.83701 0.93820 1.02261 1.88384 1.17018 1.37695 1.90336 1.23248 0.92191 0.86665 1.00525 1.23646 0.81629 0.93426 1.02606 0.92788 1.00126 1.00159 0.88129 0.88134 0.91458 0.88521 0.87456 0.87630 0.89988 0.91298 0.89093 0.91374 0.90905 0.87261 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.44 13.29 21.45 0.28 -60.16 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.98 44.44 29.54 68.60 2.03 46.47 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.55 -31.51 9.11 25.60 0.23 -31.27 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 9 C 0.04 2.46 4.26 29.85 0.13 2.58 16 10 C -0.11 -4.59 5.39 29.85 0.16 -4.43 16 11 C 0.53 21.87 8.06 87.66 0.71 22.58 16 12 O -0.60 -31.49 16.71 -3.05 -0.05 -31.54 16 13 N -0.66 -18.71 3.61 -835.87 -3.02 -21.72 16 14 C 0.10 2.06 8.05 86.49 0.70 2.76 16 15 C -0.09 -1.22 3.20 -10.13 -0.03 -1.25 16 16 C -0.10 -1.03 2.76 -9.53 -0.03 -1.06 16 17 H 0.10 0.83 8.00 -2.39 -0.02 0.81 16 18 C -0.14 -1.16 6.62 32.05 0.21 -0.95 16 19 C 0.04 0.46 7.78 72.65 0.56 1.02 16 20 O -0.41 -7.26 11.36 -148.98 -1.69 -8.95 16 21 C 0.05 0.69 7.06 72.45 0.51 1.20 16 22 C 0.11 1.75 8.19 86.45 0.71 2.46 16 23 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 24 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 25 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 26 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 27 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 29 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 30 H 0.11 1.49 8.06 -2.39 -0.02 1.47 16 31 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.69 7.98 -2.39 -0.02 0.67 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.98 7.81 -2.39 -0.02 0.96 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 1.30 8.00 -2.38 -0.02 1.28 16 38 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -81.79 317.08 2.89 -78.90 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: 1.02 Total: 3.40 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 4.32 Total: -6.39 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -2.73 Total: -81.88 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.74 Total: -40.50 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -81.79 2.89 -78.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589716546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.211 kcal (2) G-P(sol) polarization free energy of solvation -81.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds