Wall clock time and date at job start Sun Mar 29 2020 23:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 115.56278 * 2 1 4 4 C 1.53001 * 117.49832 * 214.31737 * 2 1 3 5 5 C 1.52999 * 60.00067 * 252.50364 * 4 2 1 6 6 H 1.08998 * 117.51978 * 252.51659 * 5 4 2 7 7 C 1.50706 * 117.49623 * 107.48364 * 5 4 2 8 8 O 1.21282 * 120.00298 * 291.37988 * 7 5 4 9 9 N 1.34777 * 119.99641 * 111.38454 * 7 5 4 10 10 C 1.47422 * 125.64926 * 0.03218 * 9 7 5 11 11 C 1.54909 * 104.83064 * 204.09705 * 10 9 7 12 12 C 1.55157 * 101.58635 * 322.99435 * 11 10 9 13 13 O 1.42904 * 110.87069 * 277.07063 * 12 11 10 14 14 C 1.50694 * 110.71949 * 153.86452 * 12 11 10 15 15 H 1.08000 * 120.00215 * 244.14298 * 14 12 11 16 16 C 1.37878 * 119.99902 * 64.14598 * 14 12 11 17 17 N 1.31508 * 120.00028 * 352.93272 * 16 14 12 18 18 Si 1.86805 * 119.99746 * 172.93977 * 16 14 12 19 19 H 1.48503 * 109.46921 * 269.99675 * 18 16 14 20 20 H 1.48495 * 109.47234 * 29.99877 * 18 16 14 21 21 H 1.48509 * 109.47058 * 149.99691 * 18 16 14 22 22 C 1.47026 * 125.64616 * 180.02562 * 9 7 5 23 23 H 1.09005 * 109.46635 * 274.31066 * 1 2 3 24 24 H 1.08994 * 109.47125 * 34.30251 * 1 2 3 25 25 H 1.08994 * 109.47255 * 154.31025 * 1 2 3 26 26 H 1.08999 * 109.47268 * 205.69081 * 3 2 1 27 27 H 1.09001 * 109.47141 * 325.69418 * 3 2 1 28 28 H 1.08999 * 109.46842 * 85.69261 * 3 2 1 29 29 H 1.08998 * 117.50133 * 145.01701 * 4 2 1 30 30 H 1.08995 * 117.49817 * 359.97438 * 4 2 1 31 31 H 1.08993 * 110.36988 * 322.94096 * 10 9 7 32 32 H 1.09000 * 110.36225 * 85.15360 * 10 9 7 33 33 H 1.09002 * 111.00460 * 204.92109 * 11 10 9 34 34 H 1.08998 * 111.00370 * 81.07766 * 11 10 9 35 35 H 0.96703 * 113.99651 * 290.45095 * 13 12 11 36 36 H 0.97003 * 120.00292 * 5.36120 * 17 16 14 37 37 H 1.08999 * 109.88042 * 59.55393 * 22 9 7 38 38 H 1.08999 * 109.87895 * 298.38785 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2366 -1.1210 0.7649 6 1 3.1715 -0.8751 1.2684 7 6 1.3721 -2.1407 1.4607 8 8 0.1639 -2.0533 1.4011 9 7 1.9417 -3.1497 2.1492 10 6 3.3905 -3.3743 2.3033 11 6 3.5279 -4.8892 2.5965 12 6 2.2806 -5.1496 3.4818 13 8 2.5412 -4.8023 4.8433 14 6 1.8417 -6.5872 3.3748 15 1 0.8782 -6.8275 2.9501 16 6 2.6701 -7.5958 3.8191 17 7 3.8955 -7.3175 4.2067 18 14 2.0517 -9.3578 3.8703 19 1 1.4290 -9.6257 5.1915 20 1 1.0445 -9.5603 2.7981 21 1 3.1903 -10.2883 3.6619 22 6 1.2210 -4.2085 2.8710 23 1 -0.3633 0.0772 1.0248 24 1 -0.3633 0.8489 -0.5791 25 1 -0.3633 -0.9260 -0.4455 26 1 3.1824 1.3085 -0.4455 27 1 1.5812 2.0743 -0.5792 28 1 2.2773 1.7413 1.0248 29 1 3.1715 -0.8751 -1.2685 30 1 1.6112 -1.8585 -1.2681 31 1 3.9144 -3.1170 1.3828 32 1 3.7787 -2.7882 3.1363 33 1 4.4466 -5.0993 3.1443 34 1 3.4822 -5.4710 1.6759 35 1 3.1644 -5.3934 5.2876 36 1 4.1915 -6.3949 4.2541 37 1 0.5869 -4.7632 2.1794 38 1 0.6142 -3.7700 3.6632 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:46 Heat of formation + Delta-G solvation = -64.131142 kcal Electronic energy + Delta-G solvation = -19424.935673 eV Core-core repulsion = 16460.988678 eV Total energy + Delta-G solvation = -2963.946996 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.08269 -38.31386 -36.60901 -34.68187 -32.28970 -30.20810 -29.21349 -28.42396 -27.42251 -25.17323 -23.58771 -22.22931 -20.02961 -19.43525 -18.27522 -17.98079 -16.88151 -15.66869 -14.97201 -14.85764 -14.37438 -13.95711 -13.92871 -13.72982 -13.29472 -13.10129 -12.59861 -12.45067 -12.29290 -11.94571 -11.80032 -11.72858 -11.59245 -11.24515 -11.16081 -10.87249 -10.65634 -10.55395 -10.20784 -10.16445 -9.79141 -9.32644 -9.16949 -8.71297 -8.22323 -8.09313 -6.60115 -4.42136 2.81234 3.33869 3.34647 3.39142 3.52554 3.83490 4.33509 4.62296 4.66742 4.82527 4.95121 5.06285 5.17351 5.36152 5.51426 5.55689 5.59503 5.65201 5.74317 5.78000 5.85924 5.93478 5.99803 6.06159 6.06421 6.20563 6.26968 6.52102 6.59048 6.69830 6.78913 6.94007 7.04293 7.74844 8.02665 8.16487 8.53485 8.59695 8.90614 9.29091 10.70528 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.043347 B = 0.005047 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.801610 B = 5546.406667 C = 5714.269289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.097 4.097 3 C -0.115 4.115 4 C -0.148 4.148 5 C -0.180 4.180 6 H 0.118 0.882 7 C 0.551 3.449 8 O -0.548 6.548 9 N -0.607 5.607 10 C 0.100 3.900 11 C -0.149 4.149 12 C 0.228 3.772 13 O -0.585 6.585 14 C -0.614 4.614 15 H 0.060 0.940 16 C 0.031 3.969 17 N -0.907 5.907 18 Si 1.075 2.925 19 H -0.284 1.284 20 H -0.287 1.287 21 H -0.283 1.283 22 C 0.131 3.869 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.372 0.628 36 H 0.269 0.731 37 H 0.074 0.926 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 11.330 -7.344 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.098 4.098 3 C -0.172 4.172 4 C -0.185 4.185 5 C -0.201 4.201 6 H 0.136 0.864 7 C 0.340 3.660 8 O -0.427 6.427 9 N -0.339 5.339 10 C -0.023 4.023 11 C -0.188 4.188 12 C 0.188 3.812 13 O -0.393 6.393 14 C -0.652 4.652 15 H 0.079 0.921 16 C -0.173 4.173 17 N -0.547 5.547 18 Si 0.902 3.098 19 H -0.211 1.211 20 H -0.213 1.213 21 H -0.208 1.208 22 C 0.009 3.991 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.221 0.779 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.201 10.372 -7.223 12.641 hybrid contribution 0.207 1.016 -0.089 1.041 sum 0.408 11.388 -7.313 13.540 Atomic orbital electron populations 1.21334 0.90722 1.01181 1.02577 1.21575 0.96002 0.90433 1.01783 1.21383 0.99827 0.93889 1.02079 1.23189 1.02634 1.01484 0.91192 1.22326 1.01777 1.00484 0.95560 0.86372 1.19243 0.87655 0.80611 0.78521 1.90657 1.14466 1.75052 1.62514 1.48567 1.08356 1.26433 1.50551 1.22399 0.80926 0.98929 1.00041 1.23560 1.01334 0.91939 1.01992 1.19728 0.89316 0.92834 0.79325 1.86274 1.68357 1.57932 1.26719 1.22371 1.06499 0.90556 1.45805 0.92137 1.25940 0.93425 1.05575 0.92391 1.70958 1.15943 1.22508 1.45270 0.83445 0.75476 0.74095 0.76773 1.21086 1.21289 1.20810 1.21945 0.95098 0.87362 0.94699 0.91424 0.93573 0.91667 0.92389 0.91768 0.92070 0.88065 0.88338 0.91784 0.91991 0.90346 0.90659 0.77865 0.91681 0.90824 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 8.09 37.16 0.30 -1.09 16 2 C -0.10 -1.22 2.70 -154.51 -0.42 -1.64 16 3 C -0.11 -1.10 9.85 37.16 0.37 -0.74 16 4 C -0.15 -1.80 9.52 -26.73 -0.25 -2.05 16 5 C -0.18 -2.60 4.98 -91.77 -0.46 -3.05 16 6 H 0.12 1.53 7.78 -51.93 -0.40 1.12 16 7 C 0.55 10.43 7.61 -10.98 -0.08 10.34 16 8 O -0.55 -11.67 13.43 5.56 0.07 -11.59 16 9 N -0.61 -12.16 3.33 -170.52 -0.57 -12.73 16 10 C 0.10 1.81 6.47 -2.53 -0.02 1.79 16 11 C -0.15 -3.19 5.41 -24.58 -0.13 -3.32 16 12 C 0.23 5.50 0.81 -89.94 -0.07 5.43 16 13 O -0.58 -14.49 13.09 -35.23 -0.46 -14.95 16 14 C -0.61 -16.29 8.20 -34.44 -0.28 -16.57 16 15 H 0.06 1.63 7.56 -52.49 -0.40 1.23 16 16 C 0.03 0.82 5.20 -17.82 -0.09 0.73 16 17 N -0.91 -24.36 12.91 55.43 0.72 -23.64 16 18 Si 1.07 23.67 29.91 -169.99 -5.08 18.58 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.13 3.00 6.22 -3.06 -0.02 2.98 16 23 H 0.07 1.05 7.26 -51.93 -0.38 0.67 16 24 H 0.05 0.52 7.92 -51.93 -0.41 0.11 16 25 H 0.06 1.00 7.01 -51.93 -0.36 0.63 16 26 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 27 H 0.06 0.54 7.92 -51.93 -0.41 0.13 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 30 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 31 H 0.06 0.98 7.67 -51.93 -0.40 0.58 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.69 6.39 -51.93 -0.33 1.36 16 34 H 0.07 1.67 8.04 -51.93 -0.42 1.26 16 35 H 0.37 9.08 6.62 45.56 0.30 9.38 16 36 H 0.27 6.96 3.83 -40.82 -0.16 6.80 16 37 H 0.07 1.74 7.64 -51.93 -0.40 1.34 16 38 H 0.06 1.46 8.07 -51.93 -0.42 1.04 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -29.19 303.05 -6.99 -36.17 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.07 Total: 10.78 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.16 Total: -7.19 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.15 Total: -36.37 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.39 Total: -26.54 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.08 Total: 18.58 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.19 -6.99 -36.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.957 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds