Wall clock time and date at job start Sun Mar 29 2020 23:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 115.56278 * 2 1 4 4 C 1.53001 * 117.49832 * 214.31737 * 2 1 3 5 5 C 1.52999 * 60.00067 * 252.50364 * 4 2 1 6 6 H 1.08998 * 117.51978 * 252.51659 * 5 4 2 7 7 C 1.50706 * 117.49623 * 107.48364 * 5 4 2 8 8 O 1.21282 * 120.00298 * 291.37988 * 7 5 4 9 9 N 1.34777 * 119.99641 * 111.38454 * 7 5 4 10 10 C 1.47422 * 125.64926 * 0.03218 * 9 7 5 11 11 C 1.54909 * 104.83064 * 204.09705 * 10 9 7 12 12 C 1.55157 * 101.58635 * 322.99435 * 11 10 9 13 13 O 1.42904 * 110.87069 * 277.07063 * 12 11 10 14 14 C 1.50694 * 110.71949 * 153.86452 * 12 11 10 15 15 H 1.08000 * 120.00215 * 244.14298 * 14 12 11 16 16 C 1.37878 * 119.99902 * 64.14598 * 14 12 11 17 17 N 1.31508 * 120.00028 * 352.93272 * 16 14 12 18 18 Si 1.86805 * 119.99746 * 172.93977 * 16 14 12 19 19 H 1.48503 * 109.46921 * 269.99675 * 18 16 14 20 20 H 1.48495 * 109.47234 * 29.99877 * 18 16 14 21 21 H 1.48509 * 109.47058 * 149.99691 * 18 16 14 22 22 C 1.47026 * 125.64616 * 180.02562 * 9 7 5 23 23 H 1.09005 * 109.46635 * 274.31066 * 1 2 3 24 24 H 1.08994 * 109.47125 * 34.30251 * 1 2 3 25 25 H 1.08994 * 109.47255 * 154.31025 * 1 2 3 26 26 H 1.08999 * 109.47268 * 205.69081 * 3 2 1 27 27 H 1.09001 * 109.47141 * 325.69418 * 3 2 1 28 28 H 1.08999 * 109.46842 * 85.69261 * 3 2 1 29 29 H 1.08998 * 117.50133 * 145.01701 * 4 2 1 30 30 H 1.08995 * 117.49817 * 359.97438 * 4 2 1 31 31 H 1.08993 * 110.36988 * 322.94096 * 10 9 7 32 32 H 1.09000 * 110.36225 * 85.15360 * 10 9 7 33 33 H 1.09002 * 111.00460 * 204.92109 * 11 10 9 34 34 H 1.08998 * 111.00370 * 81.07766 * 11 10 9 35 35 H 0.96703 * 113.99651 * 290.45095 * 13 12 11 36 36 H 0.97003 * 120.00292 * 5.36120 * 17 16 14 37 37 H 1.08999 * 109.88042 * 59.55393 * 22 9 7 38 38 H 1.08999 * 109.87895 * 298.38785 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2366 -1.1210 0.7649 6 1 3.1715 -0.8751 1.2684 7 6 1.3721 -2.1407 1.4607 8 8 0.1639 -2.0533 1.4011 9 7 1.9417 -3.1497 2.1492 10 6 3.3905 -3.3743 2.3033 11 6 3.5279 -4.8892 2.5965 12 6 2.2806 -5.1496 3.4818 13 8 2.5412 -4.8023 4.8433 14 6 1.8417 -6.5872 3.3748 15 1 0.8782 -6.8275 2.9501 16 6 2.6701 -7.5958 3.8191 17 7 3.8955 -7.3175 4.2067 18 14 2.0517 -9.3578 3.8703 19 1 1.4290 -9.6257 5.1915 20 1 1.0445 -9.5603 2.7981 21 1 3.1903 -10.2883 3.6619 22 6 1.2210 -4.2085 2.8710 23 1 -0.3633 0.0772 1.0248 24 1 -0.3633 0.8489 -0.5791 25 1 -0.3633 -0.9260 -0.4455 26 1 3.1824 1.3085 -0.4455 27 1 1.5812 2.0743 -0.5792 28 1 2.2773 1.7413 1.0248 29 1 3.1715 -0.8751 -1.2685 30 1 1.6112 -1.8585 -1.2681 31 1 3.9144 -3.1170 1.3828 32 1 3.7787 -2.7882 3.1363 33 1 4.4466 -5.0993 3.1443 34 1 3.4822 -5.4710 1.6759 35 1 3.1644 -5.3934 5.2876 36 1 4.1915 -6.3949 4.2541 37 1 0.5869 -4.7632 2.1794 38 1 0.6142 -3.7700 3.6632 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:46 Heat of formation + Delta-G solvation = -83.118661 kcal Electronic energy + Delta-G solvation = -19425.759034 eV Core-core repulsion = 16460.988678 eV Total energy + Delta-G solvation = -2964.770356 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51625 -39.89096 -37.99966 -36.44794 -34.31146 -31.77570 -30.56869 -29.96870 -28.34867 -26.96423 -25.13587 -23.67391 -21.73079 -20.76075 -19.96001 -19.57462 -18.32523 -17.36002 -16.60298 -16.30589 -15.98574 -15.71609 -15.23510 -14.98665 -14.68576 -14.39580 -14.06364 -14.00956 -13.57901 -13.51980 -13.43238 -13.06621 -12.86082 -12.70225 -12.60700 -12.50390 -12.31366 -12.14085 -11.94638 -11.23122 -11.19563 -10.91904 -10.72833 -10.51669 -10.16090 -9.72866 -8.68108 -6.52225 1.42058 1.55097 1.59429 1.79843 1.89831 2.49760 2.74691 2.96041 3.38274 3.57318 3.64542 3.79430 3.82236 3.96522 4.13063 4.18045 4.21412 4.39283 4.51492 4.63314 4.70067 4.80134 4.80600 4.91701 4.93899 5.03721 5.06535 5.09694 5.11523 5.13681 5.23874 5.31310 5.51893 5.77409 6.02672 6.46202 6.53455 6.94081 7.08461 7.24681 8.64402 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.043347 B = 0.005047 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.801610 B = 5546.406667 C = 5714.269289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.095 4.095 3 C -0.110 4.110 4 C -0.131 4.131 5 C -0.195 4.195 6 H 0.141 0.859 7 C 0.542 3.458 8 O -0.581 6.581 9 N -0.612 5.612 10 C 0.110 3.890 11 C -0.140 4.140 12 C 0.216 3.784 13 O -0.590 6.590 14 C -0.638 4.638 15 H 0.044 0.956 16 C -0.003 4.003 17 N -0.919 5.919 18 Si 1.116 2.884 19 H -0.275 1.275 20 H -0.280 1.280 21 H -0.277 1.277 22 C 0.137 3.863 23 H 0.041 0.959 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.137 0.863 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.372 0.628 36 H 0.268 0.732 37 H 0.056 0.944 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 12.683 -8.611 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.095 4.095 3 C -0.167 4.167 4 C -0.168 4.168 5 C -0.215 4.215 6 H 0.159 0.841 7 C 0.334 3.666 8 O -0.462 6.462 9 N -0.345 5.345 10 C -0.012 4.012 11 C -0.179 4.179 12 C 0.176 3.824 13 O -0.399 6.399 14 C -0.676 4.676 15 H 0.063 0.937 16 C -0.204 4.204 17 N -0.559 5.559 18 Si 0.938 3.062 19 H -0.201 1.201 20 H -0.205 1.205 21 H -0.202 1.202 22 C 0.014 3.986 23 H 0.060 0.940 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.155 0.845 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.221 0.779 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.770 11.757 -8.499 14.614 hybrid contribution -0.359 0.618 0.307 0.778 sum 1.411 12.375 -8.192 14.908 Atomic orbital electron populations 1.21272 0.92256 1.01041 1.01142 1.21755 0.95077 0.91956 1.00733 1.21405 1.00829 0.91815 1.02635 1.23327 1.03753 1.00463 0.89293 1.22353 1.02150 1.00228 0.96794 0.84083 1.20205 0.87930 0.80703 0.77790 1.90645 1.16309 1.75802 1.63439 1.48668 1.08919 1.26199 1.50690 1.22432 0.79994 0.96375 1.02421 1.23340 0.99617 0.94426 1.00540 1.19835 0.91046 0.92052 0.79439 1.86254 1.68476 1.57838 1.27290 1.22616 1.06174 0.92375 1.46469 0.93728 1.27060 0.93134 1.08692 0.91548 1.71017 1.16339 1.22715 1.45836 0.82913 0.75387 0.70546 0.77363 1.20106 1.20519 1.20231 1.21630 0.94864 0.88058 0.94074 0.93964 0.90930 0.94109 0.90324 0.90441 0.92062 0.84486 0.89770 0.87944 0.90835 0.90526 0.91892 0.77932 0.91795 0.92570 0.93990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.67 8.09 71.98 0.58 -2.08 16 2 C -0.09 -2.12 2.70 -52.18 -0.14 -2.26 16 3 C -0.11 -1.66 9.85 71.98 0.71 -0.96 16 4 C -0.13 -2.76 9.52 30.59 0.29 -2.47 16 5 C -0.19 -5.10 4.98 -11.54 -0.06 -5.16 16 6 H 0.14 3.07 7.78 -2.39 -0.02 3.05 16 7 C 0.54 20.33 7.61 87.66 0.67 21.00 16 8 O -0.58 -25.42 13.43 -3.04 -0.04 -25.46 16 9 N -0.61 -24.39 3.33 -811.80 -2.70 -27.09 16 10 C 0.11 3.76 6.47 86.86 0.56 4.33 16 11 C -0.14 -5.94 5.41 31.99 0.17 -5.77 16 12 C 0.22 10.62 0.81 -10.35 -0.01 10.62 16 13 O -0.59 -29.70 13.09 -148.98 -1.95 -31.65 16 14 C -0.64 -34.65 8.20 25.60 0.21 -34.44 16 15 H 0.04 2.49 7.56 -2.91 -0.02 2.47 16 16 C 0.00 -0.17 5.20 84.66 0.44 0.27 16 17 N -0.92 -49.28 12.91 21.45 0.28 -49.00 16 18 Si 1.12 47.58 29.91 68.60 2.05 49.64 16 19 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 20 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 22 C 0.14 6.49 6.22 86.73 0.54 7.03 16 23 H 0.04 1.32 7.26 -2.38 -0.02 1.31 16 24 H 0.07 1.50 7.92 -2.39 -0.02 1.48 16 25 H 0.04 1.26 7.01 -2.39 -0.02 1.24 16 26 H 0.08 0.90 7.90 -2.39 -0.02 0.88 16 27 H 0.08 0.99 7.92 -2.39 -0.02 0.97 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.14 1.95 8.05 -2.39 -0.02 1.93 16 30 H 0.08 2.04 8.05 -2.39 -0.02 2.02 16 31 H 0.10 2.77 7.67 -2.39 -0.02 2.75 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.08 3.25 6.39 -2.39 -0.02 3.24 16 34 H 0.06 2.79 8.04 -2.39 -0.02 2.77 16 35 H 0.37 18.41 6.62 -74.06 -0.49 17.92 16 36 H 0.27 13.92 3.83 -92.71 -0.35 13.56 16 37 H 0.06 2.80 7.64 -2.39 -0.02 2.78 16 38 H 0.04 2.10 8.07 -2.39 -0.02 2.08 16 Total: -1.00 -64.49 303.05 2.58 -61.91 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 0.98 Total: 31.55 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 3.97 Total: -9.89 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -2.42 Total: -76.09 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -1.99 Total: -57.12 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.05 Total: 49.64 kcal Total: -64.49 2.58 -61.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.210 kcal (2) G-P(sol) polarization free energy of solvation -64.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds