Wall clock time and date at job start Sun Mar 29 2020 23:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 112.85360 * 2 1 4 4 O 1.21275 * 120.00263 * 107.51035 * 3 2 1 5 5 N 1.34779 * 119.99353 * 287.51170 * 3 2 1 6 6 C 1.47021 * 125.65252 * 354.97991 * 5 3 2 7 7 C 1.54323 * 107.27148 * 181.02752 * 6 5 3 8 8 C 1.55161 * 102.94364 * 22.19046 * 7 6 5 9 9 O 1.42893 * 111.00183 * 82.57587 * 8 7 6 10 10 C 1.50697 * 111.03338 * 206.41325 * 8 7 6 11 11 H 1.08000 * 120.00471 * 115.40267 * 10 8 7 12 12 C 1.37884 * 120.00210 * 295.38889 * 10 8 7 13 13 N 1.31513 * 119.99665 * 0.02562 * 12 10 8 14 14 Si 1.86792 * 120.00214 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47139 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47159 * 120.00549 * 14 12 10 17 17 H 1.48503 * 109.47208 * 240.00562 * 14 12 10 18 18 C 1.47428 * 125.64368 * 174.93742 * 5 3 2 19 19 C 1.53784 * 113.68610 * 131.26652 * 2 1 3 20 20 C 1.53780 * 87.08305 * 89.12278 * 19 2 1 21 21 C 1.53781 * 113.61130 * 228.79657 * 2 1 3 22 22 H 1.09000 * 109.46710 * 65.46240 * 1 2 3 23 23 H 1.08995 * 109.47490 * 185.46253 * 1 2 3 24 24 H 1.09001 * 109.47028 * 305.46919 * 1 2 3 25 25 H 1.08998 * 109.88138 * 300.44019 * 6 5 3 26 26 H 1.09000 * 109.88167 * 61.45089 * 6 5 3 27 27 H 1.09003 * 110.71759 * 263.82868 * 7 6 5 28 28 H 1.08995 * 110.72278 * 140.56031 * 7 6 5 29 29 H 0.96702 * 114.00479 * 67.80603 * 9 8 7 30 30 H 0.97001 * 120.00026 * 179.97438 * 13 12 10 31 31 H 1.08998 * 110.36714 * 37.07488 * 18 5 3 32 32 H 1.08992 * 110.46175 * 274.79274 * 18 5 3 33 33 H 1.09001 * 113.61363 * 203.67429 * 19 2 1 34 34 H 1.09004 * 113.61734 * 334.57653 * 19 2 1 35 35 H 1.08999 * 113.61566 * 270.88441 * 20 19 2 36 36 H 1.08999 * 113.68966 * 139.98624 * 20 19 2 37 37 H 1.08998 * 113.61462 * 25.35555 * 21 2 1 38 38 H 1.09003 * 113.60929 * 156.25644 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1153 1.3887 0.0000 4 8 2.6420 1.8248 1.0016 5 7 2.0533 2.1459 -1.1132 6 6 1.5405 1.7085 -2.4198 7 6 1.6902 2.8974 -3.3922 8 6 2.7992 3.7539 -2.7258 9 8 4.0976 3.2544 -3.0522 10 6 2.6685 5.2044 -3.1132 11 1 2.4397 5.9455 -2.3617 12 6 2.8412 5.5854 -4.4270 13 7 3.1196 4.6829 -5.3422 14 14 2.6799 7.3833 -4.9071 15 1 2.3654 8.1913 -3.7014 16 1 3.9580 7.8544 -5.4985 17 1 1.5886 7.5339 -5.9028 18 6 2.4877 3.5506 -1.2220 19 6 2.1478 -0.9289 1.0585 20 6 2.0949 -2.0421 -0.0011 21 6 2.1460 -0.9282 -1.0602 22 1 -0.3633 0.4268 -0.9349 23 1 -0.3634 -1.0229 0.0978 24 1 -0.3633 0.5963 0.8370 25 1 2.1211 0.8594 -2.7804 26 1 0.4907 1.4288 -2.3312 27 1 0.7584 3.4589 -3.4611 28 1 2.0078 2.5531 -4.3764 29 1 4.3370 3.3597 -3.9832 30 1 3.2408 4.9508 -6.2666 31 1 3.3830 3.7182 -0.6233 32 1 1.6895 4.2219 -0.9058 33 1 3.1609 -0.6488 1.3474 34 1 1.4972 -1.1093 1.9143 35 1 1.1593 -2.6013 -0.0004 36 1 2.9736 -2.6870 -0.0030 37 1 1.4939 -1.1081 -1.9149 38 1 3.1585 -0.6479 -1.3505 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:22 Heat of formation + Delta-G solvation = -71.286583 kcal Electronic energy + Delta-G solvation = -19816.641592 eV Core-core repulsion = 16852.384313 eV Total energy + Delta-G solvation = -2964.257279 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.38089 -38.10706 -36.73074 -34.27768 -32.18774 -30.19922 -29.28388 -28.23962 -25.75861 -25.39673 -24.13579 -22.26053 -19.95395 -19.41703 -18.17755 -17.20621 -16.57496 -15.41938 -15.25931 -14.96540 -14.70112 -14.36950 -13.79755 -13.49522 -13.03777 -12.74972 -12.36415 -12.28918 -12.17210 -11.87672 -11.75457 -11.36399 -11.32702 -11.25712 -10.98955 -10.90913 -10.55449 -10.47565 -10.43213 -10.17873 -10.02144 -9.40637 -9.07263 -8.69738 -8.21385 -7.91617 -6.30908 -4.38867 3.13173 3.17369 3.26624 3.31087 3.61570 4.25290 4.50186 4.60491 4.78402 4.83162 4.95971 5.14036 5.47170 5.55161 5.58204 5.65003 5.74215 5.83560 5.86317 5.87083 5.92711 5.99855 6.03863 6.10507 6.29196 6.34091 6.44679 6.49369 6.68808 6.90440 7.01633 7.31173 7.33717 7.72073 7.99187 8.21433 8.63586 8.72653 9.30089 9.42792 10.76513 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.043458 B = 0.005612 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.144490 B = 4988.138424 C = 5126.673939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C 0.537 3.463 4 O -0.557 6.557 5 N -0.603 5.603 6 C 0.100 3.900 7 C -0.138 4.138 8 C 0.248 3.752 9 O -0.584 6.584 10 C -0.535 4.535 11 H 0.065 0.935 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.903 3.097 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.118 3.882 19 C -0.111 4.111 20 C -0.141 4.141 21 C -0.125 4.125 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.383 0.617 30 H 0.268 0.732 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 -10.582 4.143 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.107 4.107 3 C 0.325 3.675 4 O -0.436 6.436 5 N -0.335 5.335 6 C -0.023 4.023 7 C -0.177 4.177 8 C 0.208 3.792 9 O -0.393 6.393 10 C -0.573 4.573 11 H 0.084 0.916 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.004 4.004 19 C -0.149 4.149 20 C -0.179 4.179 21 C -0.163 4.163 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.234 0.766 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.023 -10.553 5.179 12.784 hybrid contribution -0.168 1.146 -1.119 1.610 sum -5.191 -9.407 4.060 11.486 Atomic orbital electron populations 1.21526 0.91408 1.02321 1.02731 1.22042 0.96989 0.91877 0.99808 1.19969 0.79348 0.86120 0.82072 1.90634 1.45884 1.73791 1.33288 1.48559 1.61244 1.13746 1.09924 1.22251 0.97013 0.99293 0.83716 1.23183 1.01374 0.94790 0.98318 1.19589 0.80684 0.91499 0.87471 1.86115 1.35118 1.84741 1.33301 1.21520 1.49167 0.92641 0.94000 0.91646 1.24997 0.93616 0.98298 0.96135 1.69661 1.48308 1.33410 1.02253 0.86359 0.77823 0.84217 0.78570 1.19569 1.20756 1.20815 1.22365 0.99020 0.80143 0.98873 1.22809 1.01801 0.94237 0.96038 1.22843 1.02010 0.96324 0.96699 1.23002 1.01662 0.95174 0.96438 0.91577 0.91563 0.92039 0.92194 0.92972 0.91494 0.89760 0.76616 0.92206 0.91225 0.91212 0.89399 0.91162 0.90098 0.91261 0.90696 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 8.99 37.16 0.33 -1.14 16 2 C -0.10 -1.51 0.80 -154.85 -0.12 -1.63 16 3 C 0.54 10.47 6.78 -10.99 -0.07 10.39 16 4 O -0.56 -12.76 16.56 5.56 0.09 -12.67 16 5 N -0.60 -12.16 3.33 -170.52 -0.57 -12.72 16 6 C 0.10 1.81 5.88 -3.07 -0.02 1.79 16 7 C -0.14 -2.95 5.51 -24.89 -0.14 -3.08 16 8 C 0.25 6.00 0.89 -89.62 -0.08 5.92 16 9 O -0.58 -14.98 13.19 -35.23 -0.46 -15.44 16 10 C -0.53 -13.89 8.26 -34.44 -0.28 -14.17 16 11 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 12 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 13 N -0.90 -22.90 10.74 55.43 0.60 -22.31 16 14 Si 0.90 20.06 29.54 -169.99 -5.02 15.03 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 C 0.12 2.68 6.11 -2.53 -0.02 2.67 16 19 C -0.11 -1.45 6.88 -25.92 -0.18 -1.63 16 20 C -0.14 -1.50 7.73 -25.92 -0.20 -1.70 16 21 C -0.13 -1.60 5.18 -25.92 -0.13 -1.73 16 22 H 0.07 0.79 6.31 -51.93 -0.33 0.46 16 23 H 0.07 0.64 7.32 -51.93 -0.38 0.26 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.03 6.64 -51.93 -0.34 0.69 16 26 H 0.05 0.81 6.38 -51.93 -0.33 0.48 16 27 H 0.07 1.43 8.03 -51.93 -0.42 1.02 16 28 H 0.08 1.88 7.69 -51.93 -0.40 1.48 16 29 H 0.38 9.85 7.19 45.56 0.33 10.18 16 30 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 31 H 0.07 1.70 7.99 -51.93 -0.41 1.29 16 32 H 0.07 1.54 8.02 -51.93 -0.42 1.12 16 33 H 0.09 1.29 7.85 -51.93 -0.41 0.88 16 34 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.08 0.72 7.61 -51.93 -0.40 0.33 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.86 7.90 -51.93 -0.41 0.45 16 38 H 0.09 1.24 8.07 -51.93 -0.42 0.83 16 LS Contribution 300.43 15.07 4.53 4.53 Total: -1.00 -28.53 300.43 -6.99 -35.52 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -5.15 Total: 10.64 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.01 Total: -2.58 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.03 Total: -35.03 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.37 Total: -28.11 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.53 -6.99 -35.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.764 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds