Wall clock time and date at job start Sun Mar 29 2020 23:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 112.85360 * 2 1 4 4 O 1.21275 * 120.00263 * 107.51035 * 3 2 1 5 5 N 1.34779 * 119.99353 * 287.51170 * 3 2 1 6 6 C 1.47021 * 125.65252 * 354.97991 * 5 3 2 7 7 C 1.54323 * 107.27148 * 181.02752 * 6 5 3 8 8 C 1.55161 * 102.94364 * 22.19046 * 7 6 5 9 9 O 1.42893 * 111.00183 * 82.57587 * 8 7 6 10 10 C 1.50697 * 111.03338 * 206.41325 * 8 7 6 11 11 H 1.08000 * 120.00471 * 115.40267 * 10 8 7 12 12 C 1.37884 * 120.00210 * 295.38889 * 10 8 7 13 13 N 1.31513 * 119.99665 * 0.02562 * 12 10 8 14 14 Si 1.86792 * 120.00214 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47139 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47159 * 120.00549 * 14 12 10 17 17 H 1.48503 * 109.47208 * 240.00562 * 14 12 10 18 18 C 1.47428 * 125.64368 * 174.93742 * 5 3 2 19 19 C 1.53784 * 113.68610 * 131.26652 * 2 1 3 20 20 C 1.53780 * 87.08305 * 89.12278 * 19 2 1 21 21 C 1.53781 * 113.61130 * 228.79657 * 2 1 3 22 22 H 1.09000 * 109.46710 * 65.46240 * 1 2 3 23 23 H 1.08995 * 109.47490 * 185.46253 * 1 2 3 24 24 H 1.09001 * 109.47028 * 305.46919 * 1 2 3 25 25 H 1.08998 * 109.88138 * 300.44019 * 6 5 3 26 26 H 1.09000 * 109.88167 * 61.45089 * 6 5 3 27 27 H 1.09003 * 110.71759 * 263.82868 * 7 6 5 28 28 H 1.08995 * 110.72278 * 140.56031 * 7 6 5 29 29 H 0.96702 * 114.00479 * 67.80603 * 9 8 7 30 30 H 0.97001 * 120.00026 * 179.97438 * 13 12 10 31 31 H 1.08998 * 110.36714 * 37.07488 * 18 5 3 32 32 H 1.08992 * 110.46175 * 274.79274 * 18 5 3 33 33 H 1.09001 * 113.61363 * 203.67429 * 19 2 1 34 34 H 1.09004 * 113.61734 * 334.57653 * 19 2 1 35 35 H 1.08999 * 113.61566 * 270.88441 * 20 19 2 36 36 H 1.08999 * 113.68966 * 139.98624 * 20 19 2 37 37 H 1.08998 * 113.61462 * 25.35555 * 21 2 1 38 38 H 1.09003 * 113.60929 * 156.25644 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1153 1.3887 0.0000 4 8 2.6420 1.8248 1.0016 5 7 2.0533 2.1459 -1.1132 6 6 1.5405 1.7085 -2.4198 7 6 1.6902 2.8974 -3.3922 8 6 2.7992 3.7539 -2.7258 9 8 4.0976 3.2544 -3.0522 10 6 2.6685 5.2044 -3.1132 11 1 2.4397 5.9455 -2.3617 12 6 2.8412 5.5854 -4.4270 13 7 3.1196 4.6829 -5.3422 14 14 2.6799 7.3833 -4.9071 15 1 2.3654 8.1913 -3.7014 16 1 3.9580 7.8544 -5.4985 17 1 1.5886 7.5339 -5.9028 18 6 2.4877 3.5506 -1.2220 19 6 2.1478 -0.9289 1.0585 20 6 2.0949 -2.0421 -0.0011 21 6 2.1460 -0.9282 -1.0602 22 1 -0.3633 0.4268 -0.9349 23 1 -0.3634 -1.0229 0.0978 24 1 -0.3633 0.5963 0.8370 25 1 2.1211 0.8594 -2.7804 26 1 0.4907 1.4288 -2.3312 27 1 0.7584 3.4589 -3.4611 28 1 2.0078 2.5531 -4.3764 29 1 4.3370 3.3597 -3.9832 30 1 3.2408 4.9508 -6.2666 31 1 3.3830 3.7182 -0.6233 32 1 1.6895 4.2219 -0.9058 33 1 3.1609 -0.6488 1.3474 34 1 1.4972 -1.1093 1.9143 35 1 1.1593 -2.6013 -0.0004 36 1 2.9736 -2.6870 -0.0030 37 1 1.4939 -1.1081 -1.9149 38 1 3.1585 -0.6479 -1.3505 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:21 Heat of formation + Delta-G solvation = -90.515237 kcal Electronic energy + Delta-G solvation = -19817.475409 eV Core-core repulsion = 16852.384313 eV Total energy + Delta-G solvation = -2965.091096 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72546 -39.63209 -38.30783 -36.10970 -34.18934 -31.75415 -30.57706 -29.87185 -27.35109 -26.53759 -25.49944 -23.75092 -21.65118 -20.90755 -19.52421 -19.10236 -17.94619 -17.04913 -16.87857 -16.55599 -16.13868 -15.93998 -15.38773 -14.78294 -14.64137 -14.20740 -13.86531 -13.64838 -13.38693 -13.29671 -13.25758 -13.10085 -13.05429 -12.64272 -12.52028 -12.26816 -12.21248 -12.09661 -11.83645 -11.40423 -11.29215 -11.16848 -10.70722 -10.50789 -10.15638 -9.55919 -8.26041 -6.41166 1.40255 1.44755 1.54684 1.62249 2.07858 2.39617 2.98770 3.41163 3.51496 3.71069 3.81425 3.89368 3.97296 4.04314 4.31469 4.36607 4.56983 4.58047 4.64474 4.70771 4.77895 4.85262 4.88755 4.91946 5.06120 5.07633 5.15602 5.20230 5.30252 5.31620 5.44350 5.52497 5.54792 5.76029 6.04850 6.61323 6.66903 7.15940 7.30139 7.40633 8.80259 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.043458 B = 0.005612 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.144490 B = 4988.138424 C = 5126.673939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C 0.527 3.473 4 O -0.601 6.601 5 N -0.606 5.606 6 C 0.109 3.891 7 C -0.128 4.128 8 C 0.234 3.766 9 O -0.595 6.595 10 C -0.563 4.563 11 H 0.054 0.946 12 C 0.037 3.963 13 N -0.908 5.908 14 Si 0.961 3.039 15 H -0.275 1.275 16 H -0.280 1.280 17 H -0.273 1.273 18 C 0.121 3.879 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.127 4.127 22 H 0.069 0.931 23 H 0.100 0.900 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.380 0.620 30 H 0.272 0.728 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.098 -12.346 3.528 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.109 4.109 3 C 0.318 3.682 4 O -0.483 6.483 5 N -0.338 5.338 6 C -0.013 4.013 7 C -0.167 4.167 8 C 0.194 3.806 9 O -0.404 6.404 10 C -0.601 4.601 11 H 0.072 0.928 12 C -0.164 4.164 13 N -0.547 5.547 14 Si 0.787 3.213 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.198 1.198 18 C -0.002 4.002 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.164 4.164 22 H 0.088 0.912 23 H 0.119 0.881 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.230 0.770 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.796 -12.342 4.551 14.806 hybrid contribution 0.441 1.732 -0.900 2.002 sum -6.355 -10.610 3.651 12.895 Atomic orbital electron populations 1.21568 0.88920 1.04459 1.02616 1.22280 0.98710 0.88277 1.01626 1.21106 0.78450 0.87771 0.80920 1.90602 1.47803 1.75137 1.34802 1.48669 1.61308 1.12668 1.11125 1.22282 0.99322 0.97975 0.81745 1.22974 0.99881 0.95458 0.98355 1.19772 0.80837 0.91512 0.88452 1.86105 1.36394 1.84879 1.33057 1.21711 1.50456 0.93534 0.94377 0.92780 1.25608 0.93123 1.01763 0.95916 1.69716 1.47851 1.34656 1.02483 0.85460 0.77868 0.79925 0.78055 1.19944 1.20611 1.19850 1.22144 0.97927 0.82409 0.97700 1.22850 1.00511 0.95108 0.97118 1.22812 1.04062 0.95239 0.93510 1.23018 1.00577 0.95459 0.97385 0.91223 0.88085 0.92848 0.90937 0.89322 0.91738 0.90786 0.77008 0.91810 0.94162 0.91053 0.92121 0.89699 0.87012 0.90301 0.88548 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.99 71.98 0.65 -1.77 16 2 C -0.11 -2.85 0.80 -52.40 -0.04 -2.89 16 3 C 0.53 20.56 6.78 87.66 0.59 21.16 16 4 O -0.60 -28.48 16.56 -3.01 -0.05 -28.52 16 5 N -0.61 -24.44 3.33 -811.81 -2.70 -27.14 16 6 C 0.11 3.75 5.88 86.73 0.51 4.26 16 7 C -0.13 -5.41 5.51 31.78 0.18 -5.24 16 8 C 0.23 11.57 0.89 -10.15 -0.01 11.56 16 9 O -0.60 -31.36 13.19 -148.98 -1.96 -33.33 16 10 C -0.56 -29.77 8.26 25.60 0.21 -29.56 16 11 H 0.05 2.90 7.78 -2.91 -0.02 2.88 16 12 C 0.04 1.89 5.27 84.66 0.45 2.34 16 13 N -0.91 -46.23 10.74 21.45 0.23 -46.00 16 14 Si 0.96 41.05 29.54 68.60 2.03 43.07 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 C 0.12 5.71 6.11 86.86 0.53 6.24 16 19 C -0.12 -2.85 6.88 31.12 0.21 -2.64 16 20 C -0.12 -2.08 7.73 31.12 0.24 -1.83 16 21 C -0.13 -2.88 5.18 31.12 0.16 -2.72 16 22 H 0.07 1.37 6.31 -2.39 -0.02 1.36 16 23 H 0.10 1.39 7.32 -2.39 -0.02 1.38 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 2.35 6.64 -2.39 -0.02 2.33 16 26 H 0.09 2.46 6.38 -2.39 -0.02 2.44 16 27 H 0.06 2.72 8.03 -2.39 -0.02 2.70 16 28 H 0.07 3.27 7.69 -2.39 -0.02 3.25 16 29 H 0.38 20.00 7.19 -74.06 -0.53 19.47 16 30 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 31 H 0.04 2.08 7.99 -2.39 -0.02 2.06 16 32 H 0.07 3.27 8.02 -2.39 -0.02 3.25 16 33 H 0.06 1.79 7.85 -2.39 -0.02 1.77 16 34 H 0.08 1.78 8.10 -2.38 -0.02 1.76 16 35 H 0.11 1.34 7.61 -2.39 -0.02 1.32 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.79 7.90 -2.39 -0.02 1.77 16 38 H 0.06 1.71 8.07 -2.39 -0.02 1.69 16 Total: -1.00 -63.34 300.43 1.74 -61.59 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.52 Total: 31.43 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 3.68 Total: -1.11 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -2.47 Total: -73.14 kcal Atomic # 8 Polarization: -59.84 SS G_CDS: -2.01 Total: -61.85 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -63.34 1.74 -61.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.921 kcal (2) G-P(sol) polarization free energy of solvation -63.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds