Wall clock time and date at job start Sun Mar 29 2020 23:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86804 * 120.00255 * 2 1 4 4 H 1.48499 * 109.46639 * 264.99714 * 3 2 1 5 5 H 1.48500 * 109.46927 * 24.99411 * 3 2 1 6 6 H 1.48494 * 109.47123 * 144.99688 * 3 2 1 7 7 C 1.40052 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00090 * 185.45916 * 7 2 1 9 9 C 1.46378 * 120.00041 * 5.46048 * 7 2 1 10 10 O 1.21690 * 119.99384 * 5.90132 * 9 7 2 11 11 N 1.34765 * 120.00157 * 185.90159 * 9 7 2 12 12 C 1.46935 * 120.63138 * 354.63731 * 11 9 7 13 13 C 1.53184 * 108.77629 * 126.41437 * 12 11 9 14 14 C 1.53043 * 109.31299 * 54.63692 * 13 12 11 15 15 C 1.53040 * 109.53987 * 298.63155 * 14 13 12 16 16 H 1.09000 * 109.49770 * 301.42045 * 15 14 13 17 17 O 1.42895 * 109.52888 * 181.33701 * 15 14 13 18 18 C 1.42897 * 114.00420 * 150.08516 * 17 15 14 19 19 C 1.53782 * 113.61197 * 249.13632 * 18 17 15 20 20 C 1.53954 * 87.01795 * 220.04448 * 19 18 17 21 21 C 1.53781 * 113.61842 * 151.52597 * 18 17 15 22 22 C 1.46928 * 120.63570 * 174.66090 * 11 9 7 23 23 H 0.96999 * 119.99606 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.58259 * 246.20088 * 12 11 9 25 25 H 1.08992 * 109.58543 * 6.47930 * 12 11 9 26 26 H 1.09004 * 109.49833 * 174.58370 * 13 12 11 27 27 H 1.09001 * 109.50062 * 294.68500 * 13 12 11 28 28 H 1.09004 * 109.46054 * 178.61271 * 14 13 12 29 29 H 1.08992 * 109.46212 * 58.65666 * 14 13 12 30 30 H 1.08999 * 112.84971 * 20.32709 * 18 17 15 31 31 H 1.09005 * 113.61159 * 334.56485 * 19 18 17 32 32 H 1.09002 * 113.61470 * 105.46879 * 19 18 17 33 33 H 1.08995 * 113.53988 * 270.80782 * 20 19 18 34 34 H 1.08997 * 113.73966 * 139.94310 * 20 19 18 35 35 H 1.08995 * 113.61368 * 254.53284 * 21 18 17 36 36 H 1.08998 * 113.60747 * 25.43343 * 21 18 17 37 37 H 1.08995 * 109.59089 * 113.79458 * 22 11 9 38 38 H 1.09010 * 109.69910 * 353.43980 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.5940 1.9852 -1.3948 5 1 1.3894 2.6809 0.5916 6 1 3.4815 1.4729 0.8031 7 6 2.0070 -1.2129 0.0005 8 1 3.0833 -1.2150 0.0895 9 6 1.2801 -2.4777 -0.1195 10 8 0.0811 -2.4730 -0.3274 11 7 1.9386 -3.6474 0.0002 12 6 3.4016 -3.6726 0.1340 13 6 3.7688 -4.4811 1.3822 14 6 3.1215 -5.8654 1.2970 15 6 1.5992 -5.7165 1.2486 16 1 1.2568 -5.1875 2.1380 17 8 0.9940 -7.0101 1.2005 18 6 -0.2985 -7.0701 1.8069 19 6 -0.3304 -7.8868 3.1095 20 6 -1.6849 -8.4426 2.6333 21 6 -1.2146 -8.1456 1.1996 22 6 1.2075 -4.9219 -0.0012 23 1 -0.4849 0.8401 0.0004 24 1 3.8411 -4.1406 -0.7470 25 1 3.7771 -2.6541 0.2322 26 1 4.8519 -4.5890 1.4403 27 1 3.4060 -3.9639 2.2705 28 1 3.4014 -6.4516 2.1724 29 1 3.4657 -6.3723 0.3957 30 1 -0.7714 -6.0918 1.8932 31 1 0.4539 -8.6413 3.1711 32 1 -0.4007 -7.2735 4.0078 33 1 -2.5372 -7.8400 2.9469 34 1 -1.8195 -9.5048 2.8374 35 1 -1.9975 -7.7409 0.5582 36 1 -0.6725 -8.9710 0.7381 37 1 1.4680 -5.4917 -0.8931 38 1 0.1344 -4.7299 0.0093 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594388869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:50 Heat of formation + Delta-G solvation = -67.944817 kcal Electronic energy + Delta-G solvation = -19268.054277 eV Core-core repulsion = 16303.941908 eV Total energy + Delta-G solvation = -2964.112369 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.43766 -38.24789 -36.26382 -34.74931 -32.59860 -31.28446 -29.68726 -26.44260 -25.61853 -24.66791 -24.18827 -22.18619 -20.63428 -19.52623 -18.84342 -17.15366 -16.32264 -15.79287 -15.46882 -14.83603 -14.62122 -14.30255 -14.01331 -13.31036 -13.16437 -13.10848 -12.51979 -12.42365 -12.28167 -11.76354 -11.59366 -11.42388 -11.29234 -11.05530 -10.98609 -10.80741 -10.62157 -10.43916 -10.31610 -10.24226 -9.97017 -9.84967 -9.19478 -8.86569 -7.61027 -7.22368 -6.24208 -4.66775 3.12735 3.19258 3.21461 3.81210 4.09311 4.52557 4.61342 4.64003 4.68095 4.90982 4.95025 5.23451 5.26481 5.44495 5.49610 5.64408 5.68148 5.72991 5.77609 5.77929 5.85460 5.97049 6.00714 6.12417 6.19260 6.22363 6.28834 6.40108 6.44563 6.53323 6.60231 6.75068 7.43581 7.47793 7.67838 8.12058 8.33055 8.99572 9.41073 10.54639 10.72860 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.005429 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.851150 B = 5155.984054 C = 5755.592075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.560 3.440 10 O -0.580 6.580 11 N -0.639 5.639 12 C 0.118 3.882 13 C -0.132 4.132 14 C -0.109 4.109 15 C 0.076 3.924 16 H 0.060 0.940 17 O -0.371 6.371 18 C 0.063 3.937 19 C -0.158 4.158 20 C -0.142 4.142 21 C -0.137 4.137 22 C 0.104 3.896 23 H 0.269 0.731 24 H 0.042 0.958 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 -11.893 4.957 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.092 0.908 9 C 0.366 3.634 10 O -0.462 6.462 11 N -0.379 5.379 12 C -0.006 4.006 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.018 3.982 16 H 0.078 0.922 17 O -0.289 6.289 18 C 0.004 3.996 19 C -0.196 4.196 20 C -0.179 4.179 21 C -0.175 4.175 22 C -0.020 4.020 23 H 0.080 0.920 24 H 0.061 0.939 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.744 -11.934 4.756 13.137 hybrid contribution 0.405 0.945 0.158 1.040 sum 3.149 -10.989 4.914 12.443 Atomic orbital electron populations 1.69996 1.07144 1.27433 1.35160 1.25726 0.94589 1.00314 0.92494 0.86403 0.80073 0.81314 0.79082 1.19581 1.20513 1.18911 1.20967 0.94034 0.89320 1.53849 0.90792 1.18269 0.86668 0.82144 0.76313 1.90584 1.15531 1.86199 1.53923 1.48145 1.05380 1.05144 1.79219 1.21480 0.82740 1.01331 0.95053 1.21948 0.99658 0.95270 1.00223 1.21521 0.93476 0.97580 1.02087 1.22595 0.93483 0.83447 0.98711 0.92185 1.87886 1.31063 1.30627 1.79305 1.23744 0.84494 0.98228 0.93086 1.23521 0.97693 1.00265 0.98093 1.22672 0.97217 1.01228 0.96797 1.23186 0.98449 0.99098 0.96751 1.21535 0.98886 0.85913 0.95692 0.92025 0.93933 0.88649 0.91330 0.91564 0.92115 0.91562 0.89331 0.89538 0.91525 0.90072 0.91066 0.90997 0.89397 0.93422 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.91 11.88 55.55 0.66 -22.25 16 2 C 0.09 2.45 5.49 -17.36 -0.10 2.35 16 3 Si 0.91 19.88 29.56 -169.99 -5.03 14.85 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.55 -15.19 8.87 -35.63 -0.32 -15.50 16 8 H 0.07 1.86 5.65 -52.49 -0.30 1.57 16 9 C 0.56 16.04 7.60 -12.99 -0.10 15.94 16 10 O -0.58 -18.87 14.52 5.20 0.08 -18.79 16 11 N -0.64 -14.81 2.97 -174.42 -0.52 -15.33 16 12 C 0.12 2.21 6.35 -3.71 -0.02 2.19 16 13 C -0.13 -2.03 6.08 -26.61 -0.16 -2.20 16 14 C -0.11 -1.65 5.54 -26.69 -0.15 -1.79 16 15 C 0.08 1.33 2.63 -26.61 -0.07 1.26 16 16 H 0.06 1.11 7.74 -51.93 -0.40 0.70 16 17 O -0.37 -6.07 10.00 -35.23 -0.35 -6.42 16 18 C 0.06 0.90 4.11 -25.92 -0.11 0.79 16 19 C -0.16 -1.87 7.93 -25.83 -0.20 -2.08 16 20 C -0.14 -1.48 8.09 -25.83 -0.21 -1.69 16 21 C -0.14 -1.67 7.92 -25.92 -0.21 -1.88 16 22 C 0.10 2.18 6.03 -3.71 -0.02 2.15 16 23 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 24 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 25 H 0.10 1.85 5.30 -51.93 -0.28 1.57 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.09 1.38 7.80 -51.93 -0.40 0.97 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.90 7.05 -51.92 -0.37 1.53 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -33.08 306.43 -8.16 -41.24 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.95 Total: 2.54 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.66 Total: -0.45 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.14 Total: -37.59 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.28 Total: -25.21 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.08 -8.16 -41.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594388869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.709 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds