Wall clock time and date at job start Sun Mar 29 2020 23:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86804 * 120.00255 * 2 1 4 4 H 1.48499 * 109.46639 * 264.99714 * 3 2 1 5 5 H 1.48500 * 109.46927 * 24.99411 * 3 2 1 6 6 H 1.48494 * 109.47123 * 144.99688 * 3 2 1 7 7 C 1.40052 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00090 * 185.45916 * 7 2 1 9 9 C 1.46378 * 120.00041 * 5.46048 * 7 2 1 10 10 O 1.21690 * 119.99384 * 5.90132 * 9 7 2 11 11 N 1.34765 * 120.00157 * 185.90159 * 9 7 2 12 12 C 1.46935 * 120.63138 * 354.63731 * 11 9 7 13 13 C 1.53184 * 108.77629 * 126.41437 * 12 11 9 14 14 C 1.53043 * 109.31299 * 54.63692 * 13 12 11 15 15 C 1.53040 * 109.53987 * 298.63155 * 14 13 12 16 16 H 1.09000 * 109.49770 * 301.42045 * 15 14 13 17 17 O 1.42895 * 109.52888 * 181.33701 * 15 14 13 18 18 C 1.42897 * 114.00420 * 150.08516 * 17 15 14 19 19 C 1.53782 * 113.61197 * 249.13632 * 18 17 15 20 20 C 1.53954 * 87.01795 * 220.04448 * 19 18 17 21 21 C 1.53781 * 113.61842 * 151.52597 * 18 17 15 22 22 C 1.46928 * 120.63570 * 174.66090 * 11 9 7 23 23 H 0.96999 * 119.99606 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.58259 * 246.20088 * 12 11 9 25 25 H 1.08992 * 109.58543 * 6.47930 * 12 11 9 26 26 H 1.09004 * 109.49833 * 174.58370 * 13 12 11 27 27 H 1.09001 * 109.50062 * 294.68500 * 13 12 11 28 28 H 1.09004 * 109.46054 * 178.61271 * 14 13 12 29 29 H 1.08992 * 109.46212 * 58.65666 * 14 13 12 30 30 H 1.08999 * 112.84971 * 20.32709 * 18 17 15 31 31 H 1.09005 * 113.61159 * 334.56485 * 19 18 17 32 32 H 1.09002 * 113.61470 * 105.46879 * 19 18 17 33 33 H 1.08995 * 113.53988 * 270.80782 * 20 19 18 34 34 H 1.08997 * 113.73966 * 139.94310 * 20 19 18 35 35 H 1.08995 * 113.61368 * 254.53284 * 21 18 17 36 36 H 1.08998 * 113.60747 * 25.43343 * 21 18 17 37 37 H 1.08995 * 109.59089 * 113.79458 * 22 11 9 38 38 H 1.09010 * 109.69910 * 353.43980 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.5940 1.9852 -1.3948 5 1 1.3894 2.6809 0.5916 6 1 3.4815 1.4729 0.8031 7 6 2.0070 -1.2129 0.0005 8 1 3.0833 -1.2150 0.0895 9 6 1.2801 -2.4777 -0.1195 10 8 0.0811 -2.4730 -0.3274 11 7 1.9386 -3.6474 0.0002 12 6 3.4016 -3.6726 0.1340 13 6 3.7688 -4.4811 1.3822 14 6 3.1215 -5.8654 1.2970 15 6 1.5992 -5.7165 1.2486 16 1 1.2568 -5.1875 2.1380 17 8 0.9940 -7.0101 1.2005 18 6 -0.2985 -7.0701 1.8069 19 6 -0.3304 -7.8868 3.1095 20 6 -1.6849 -8.4426 2.6333 21 6 -1.2146 -8.1456 1.1996 22 6 1.2075 -4.9219 -0.0012 23 1 -0.4849 0.8401 0.0004 24 1 3.8411 -4.1406 -0.7470 25 1 3.7771 -2.6541 0.2322 26 1 4.8519 -4.5890 1.4403 27 1 3.4060 -3.9639 2.2705 28 1 3.4014 -6.4516 2.1724 29 1 3.4657 -6.3723 0.3957 30 1 -0.7714 -6.0918 1.8932 31 1 0.4539 -8.6413 3.1711 32 1 -0.4007 -7.2735 4.0078 33 1 -2.5372 -7.8400 2.9469 34 1 -1.8195 -9.5048 2.8374 35 1 -1.9975 -7.7409 0.5582 36 1 -0.6725 -8.9710 0.7381 37 1 1.4680 -5.4917 -0.8931 38 1 0.1344 -4.7299 0.0093 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594388869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:49 Heat of formation + Delta-G solvation = -89.744236 kcal Electronic energy + Delta-G solvation = -19268.999571 eV Core-core repulsion = 16303.941908 eV Total energy + Delta-G solvation = -2965.057663 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80644 -39.76443 -37.94093 -36.25983 -34.71138 -32.95465 -31.24914 -28.44642 -26.60812 -25.94914 -25.70780 -23.63026 -22.27669 -20.80341 -20.36539 -18.70959 -17.95102 -17.75469 -16.63489 -16.41128 -16.24496 -15.79973 -15.53231 -14.94378 -14.64373 -14.49904 -14.15470 -13.69020 -13.49270 -13.37632 -13.18040 -12.95748 -12.90594 -12.71034 -12.36105 -12.24843 -12.02150 -11.90390 -11.67598 -11.57090 -11.36263 -11.28110 -10.93693 -10.49168 -9.81994 -9.10753 -8.32855 -6.85610 1.39804 1.42142 1.56379 2.21181 2.41491 2.51845 2.97970 3.53355 3.64504 3.64689 3.82403 3.88084 3.95162 4.01323 4.08552 4.23480 4.25230 4.44976 4.58740 4.72054 4.79715 4.81616 4.82143 4.91634 4.98502 5.00747 5.02505 5.04795 5.14553 5.21958 5.34431 5.39711 5.44207 5.73518 6.09386 6.24332 6.40138 6.85934 7.39108 8.43020 8.64638 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.005429 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.851150 B = 5155.984054 C = 5755.592075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.244 1.244 7 C -0.568 4.568 8 H 0.099 0.901 9 C 0.539 3.461 10 O -0.637 6.637 11 N -0.642 5.642 12 C 0.110 3.890 13 C -0.122 4.122 14 C -0.102 4.102 15 C 0.088 3.912 16 H 0.042 0.958 17 O -0.373 6.373 18 C 0.040 3.960 19 C -0.149 4.149 20 C -0.129 4.129 21 C -0.137 4.137 22 C 0.105 3.895 23 H 0.274 0.726 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.111 0.889 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 -12.662 5.882 15.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.167 1.167 7 C -0.604 4.604 8 H 0.116 0.884 9 C 0.346 3.654 10 O -0.525 6.525 11 N -0.380 5.380 12 C -0.013 4.013 13 C -0.161 4.161 14 C -0.140 4.140 15 C 0.029 3.971 16 H 0.061 0.939 17 O -0.291 6.291 18 C -0.018 4.018 19 C -0.187 4.187 20 C -0.166 4.166 21 C -0.174 4.174 22 C -0.019 4.019 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.105 0.895 26 H 0.129 0.871 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.388 -12.762 5.695 14.978 hybrid contribution -0.442 1.100 -0.172 1.198 sum 4.946 -11.662 5.523 13.819 Atomic orbital electron populations 1.70181 1.09741 1.29038 1.36478 1.27037 0.95464 1.05075 0.91059 0.85035 0.78814 0.74843 0.79653 1.18694 1.19964 1.16673 1.21508 0.95372 0.89627 1.53904 0.88360 1.18759 0.86335 0.84199 0.76141 1.90530 1.17923 1.87512 1.56486 1.48042 1.07501 1.04442 1.78028 1.21770 0.79656 1.01987 0.97861 1.21894 1.02163 0.94473 0.97536 1.21522 0.90813 0.97847 1.03795 1.22386 0.95598 0.83415 0.95675 0.93949 1.87875 1.31883 1.29467 1.79859 1.24036 0.84047 0.98104 0.95634 1.23483 0.98841 0.99808 0.96521 1.22656 0.96497 1.02701 0.94752 1.23230 0.97854 0.98311 0.98017 1.21589 0.96554 0.85632 0.98130 0.91583 0.91860 0.89451 0.87101 0.92831 0.89583 0.90478 0.91858 0.88604 0.91243 0.89671 0.88695 0.91471 0.88649 0.92677 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.07 11.88 21.84 0.26 -50.81 16 2 C 0.03 1.60 5.49 85.31 0.47 2.07 16 3 Si 1.00 40.65 29.56 68.60 2.03 42.68 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.24 -9.02 7.11 99.48 0.71 -8.31 16 7 C -0.57 -32.17 8.87 24.83 0.22 -31.95 16 8 H 0.10 4.89 5.65 -2.91 -0.02 4.88 16 9 C 0.54 32.25 7.60 86.36 0.66 32.90 16 10 O -0.64 -44.18 14.52 -4.32 -0.06 -44.24 16 11 N -0.64 -30.52 2.97 -823.98 -2.45 -32.97 16 12 C 0.11 3.95 6.35 86.36 0.55 4.50 16 13 C -0.12 -3.42 6.08 30.67 0.19 -3.24 16 14 C -0.10 -2.82 5.54 30.62 0.17 -2.65 16 15 C 0.09 3.08 2.63 30.67 0.08 3.16 16 16 H 0.04 1.62 7.74 -2.39 -0.02 1.60 16 17 O -0.37 -12.08 10.00 -148.98 -1.49 -13.57 16 18 C 0.04 1.16 4.11 31.12 0.13 1.28 16 19 C -0.15 -3.33 7.93 31.18 0.25 -3.09 16 20 C -0.13 -2.47 8.09 31.18 0.25 -2.22 16 21 C -0.14 -3.26 7.92 31.12 0.25 -3.01 16 22 C 0.11 4.57 6.03 86.36 0.52 5.09 16 23 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16 24 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 25 H 0.09 3.27 5.30 -2.39 -0.01 3.26 16 26 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 30 H 0.06 2.14 7.80 -2.39 -0.02 2.12 16 31 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.04 2.11 7.05 -2.38 -0.02 2.10 16 Total: -1.00 -76.34 306.43 3.05 -73.29 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 1.04 Total: 22.76 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 3.72 Total: 2.86 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -2.19 Total: -83.78 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -1.55 Total: -57.82 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -76.34 3.05 -73.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594388869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.455 kcal (2) G-P(sol) polarization free energy of solvation -76.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds