Wall clock time and date at job start Mon Mar 30 2020 00:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00058 * 2 1 4 4 C 1.53005 * 109.47060 * 239.99832 * 3 2 1 5 5 O 1.42902 * 109.47492 * 359.97438 * 3 2 1 6 6 C 1.50696 * 109.47230 * 120.00156 * 3 2 1 7 7 O 1.21286 * 120.00041 * 12.90568 * 6 3 2 8 8 N 1.34783 * 120.00248 * 192.90675 * 6 3 2 9 9 C 1.46923 * 120.62759 * 183.69648 * 8 6 3 10 10 C 1.53198 * 108.77237 * 126.37274 * 9 8 6 11 11 C 1.53035 * 109.31146 * 54.63068 * 10 9 8 12 12 C 1.53038 * 109.54404 * 298.63388 * 11 10 9 13 13 H 1.09004 * 109.49864 * 301.42060 * 12 11 10 14 14 C 1.50694 * 109.50269 * 181.32078 * 12 11 10 15 15 H 1.08001 * 119.99714 * 240.00274 * 14 12 11 16 16 C 1.37874 * 120.00214 * 60.00142 * 14 12 11 17 17 N 1.31519 * 119.99943 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00089 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47173 * 89.99566 * 18 16 14 20 20 H 1.48494 * 109.46896 * 209.99987 * 18 16 14 21 21 H 1.48499 * 109.46992 * 329.99623 * 18 16 14 22 22 C 1.46923 * 120.62798 * 3.41716 * 8 6 3 23 23 H 1.07999 * 120.00091 * 179.97438 * 1 2 3 24 24 H 1.08001 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.99650 * 179.72719 * 2 1 3 26 26 H 1.08995 * 109.47089 * 60.00379 * 4 3 2 27 27 H 1.09006 * 109.47161 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.47624 * 299.99974 * 4 3 2 29 29 H 0.96699 * 113.99508 * 59.99966 * 5 3 2 30 30 H 1.09002 * 109.58404 * 246.15128 * 9 8 6 31 31 H 1.08998 * 109.59016 * 6.57967 * 9 8 6 32 32 H 1.08998 * 109.49361 * 174.58233 * 10 9 8 33 33 H 1.08996 * 109.49606 * 294.67854 * 10 9 8 34 34 H 1.09006 * 109.46384 * 58.66053 * 11 10 9 35 35 H 1.09006 * 109.45729 * 178.62566 * 11 10 9 36 36 H 0.96994 * 119.99718 * 180.02562 * 17 16 14 37 37 H 1.09007 * 109.58943 * 353.42189 * 22 8 6 38 38 H 1.09001 * 109.58292 * 113.84443 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9431 1.3861 -1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9299 1.3849 1.2304 7 8 3.1196 0.3942 1.9038 8 7 3.4939 2.5573 1.5826 9 6 4.4054 2.6338 2.7323 10 6 5.7190 3.2780 2.2780 11 6 5.4203 4.6278 1.6216 12 6 4.5362 4.4141 0.3908 13 1 5.0429 3.7509 -0.3104 14 6 4.2694 5.7401 -0.2734 15 1 3.2554 6.0967 -0.3792 16 6 5.3196 6.4983 -0.7459 17 7 6.5543 6.0643 -0.6165 18 14 4.9888 8.1424 -1.5686 19 1 4.9972 9.2185 -0.5453 20 1 6.0435 8.4115 -2.5787 21 1 3.6627 8.1041 -2.2357 22 6 3.2137 3.7816 0.8203 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8499 -0.9354 0.0045 26 1 2.3165 1.3284 -2.1392 27 1 3.4878 2.3303 -1.2495 28 1 3.6515 0.5576 -1.2493 29 1 0.5433 2.4034 0.7642 30 1 3.9534 3.2403 3.5172 31 1 4.6020 1.6306 3.1104 32 1 6.3678 3.4287 3.1408 33 1 6.2146 2.6256 1.5591 34 1 4.9027 5.2711 2.3332 35 1 6.3554 5.0994 1.3193 36 1 7.2932 6.5978 -0.9486 37 1 2.6241 3.5354 -0.0628 38 1 2.6625 4.4835 1.4462 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597897489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:20 Heat of formation + Delta-G solvation = -65.848952 kcal Electronic energy + Delta-G solvation = -19968.116091 eV Core-core repulsion = 17004.094606 eV Total energy + Delta-G solvation = -2964.021486 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.31105 -37.48397 -36.66528 -33.39278 -32.77016 -31.72093 -30.37456 -29.76812 -25.34125 -24.97335 -23.40819 -21.78700 -20.50470 -19.48007 -18.67362 -17.48067 -16.54853 -16.01561 -15.68744 -15.04622 -14.59841 -14.02243 -13.92493 -13.44028 -12.92254 -12.81461 -12.67660 -12.42503 -12.30311 -11.89976 -11.87388 -11.84061 -11.34649 -10.99799 -10.88633 -10.75175 -10.54892 -10.23817 -9.95215 -9.79335 -9.66019 -9.43050 -8.92837 -8.74811 -8.40658 -7.91688 -6.04209 -4.11907 2.20574 2.85899 3.27616 3.34964 3.37695 3.53985 4.19391 4.39287 4.74374 4.83869 5.20864 5.25396 5.36459 5.64389 5.75623 5.77588 5.88228 5.92165 6.02117 6.08846 6.30359 6.34139 6.40512 6.54342 6.55514 6.65802 6.70232 6.84029 6.97705 7.15993 7.35010 7.50530 7.67296 7.88245 7.93885 8.08542 8.34545 8.54470 8.92154 9.53481 11.01049 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.007021 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.018097 B = 3986.800350 C = 4690.277401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.155 4.155 3 C 0.150 3.850 4 C -0.142 4.142 5 O -0.535 6.535 6 C 0.489 3.511 7 O -0.558 6.558 8 N -0.589 5.589 9 C 0.111 3.889 10 C -0.133 4.133 11 C -0.114 4.114 12 C 0.038 3.962 13 H 0.028 0.972 14 C -0.514 4.514 15 H 0.058 0.942 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.094 3.906 23 H 0.101 0.899 24 H 0.104 0.896 25 H 0.121 0.879 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.376 0.624 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.035 0.965 35 H 0.095 0.905 36 H 0.260 0.740 37 H 0.107 0.893 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 -7.589 2.030 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.174 4.174 3 C 0.106 3.894 4 C -0.199 4.199 5 O -0.342 6.342 6 C 0.276 3.724 7 O -0.438 6.438 8 N -0.319 5.319 9 C -0.012 4.012 10 C -0.171 4.171 11 C -0.152 4.152 12 C 0.019 3.981 13 H 0.046 0.954 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.026 4.026 23 H 0.119 0.881 24 H 0.122 0.878 25 H 0.139 0.861 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.225 0.775 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.096 -7.884 1.786 10.757 hybrid contribution -0.265 0.849 0.162 0.904 sum -7.362 -7.035 1.948 10.367 Atomic orbital electron populations 1.23774 0.95753 1.02276 1.00765 1.23219 0.96300 0.98097 0.99789 1.20316 0.88626 0.85665 0.94808 1.21880 0.98790 1.04615 0.94603 1.86671 1.50057 1.47657 1.49767 1.21170 0.81552 0.83223 0.86473 1.90630 1.63175 1.35811 1.54161 1.48364 1.44078 1.09198 1.30306 1.21622 0.90677 1.01151 0.87740 1.21989 0.95226 0.99832 1.00083 1.21649 1.03685 0.93030 0.96820 1.18926 0.90055 0.95601 0.93522 0.95368 1.21059 0.93099 1.03429 1.37630 0.92398 1.24939 0.95105 0.97957 0.95783 1.69877 0.98363 1.38006 1.46436 0.86602 0.78025 0.84136 0.79298 1.20728 1.21282 1.19825 1.22544 1.00776 0.83362 0.95950 0.88088 0.87807 0.86139 0.90777 0.89289 0.90840 0.77527 0.92273 0.90458 0.92564 0.92520 0.94664 0.88693 0.92965 0.87481 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 13.93 29.02 0.40 -1.72 16 2 C -0.16 -2.09 8.05 -36.03 -0.29 -2.38 16 3 C 0.15 2.27 0.92 -92.92 -0.09 2.19 16 4 C -0.14 -2.14 8.53 37.16 0.32 -1.83 16 5 O -0.53 -7.62 9.01 -35.23 -0.32 -7.94 16 6 C 0.49 8.85 6.66 -10.98 -0.07 8.77 16 7 O -0.56 -11.30 15.52 5.55 0.09 -11.22 16 8 N -0.59 -10.94 2.98 -173.03 -0.52 -11.45 16 9 C 0.11 1.99 6.43 -3.71 -0.02 1.96 16 10 C -0.13 -2.54 6.08 -26.61 -0.16 -2.70 16 11 C -0.11 -2.56 4.96 -26.69 -0.13 -2.69 16 12 C 0.04 0.89 2.17 -91.88 -0.20 0.69 16 13 H 0.03 0.73 7.81 -51.93 -0.41 0.33 16 14 C -0.51 -13.29 8.56 -34.44 -0.29 -13.59 16 15 H 0.06 1.48 7.75 -52.49 -0.41 1.07 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.42 11.31 55.43 0.63 -23.79 16 18 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 C 0.09 1.86 4.27 -3.93 -0.02 1.84 16 23 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 24 H 0.10 1.07 6.41 -52.49 -0.34 0.74 16 25 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 1.56 5.95 -51.93 -0.31 1.25 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.38 4.25 8.05 45.56 0.37 4.61 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.38 7.03 -51.93 -0.36 1.02 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.11 2.06 3.63 -51.93 -0.19 1.87 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 299.61 15.07 4.52 4.52 Total: -1.00 -28.86 299.61 -6.17 -35.03 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.90 Total: 7.18 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.65 Total: -7.86 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.11 Total: -35.24 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.23 Total: -19.15 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.86 -6.17 -35.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597897489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.818 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds