Wall clock time and date at job start Mon Mar 30 2020 00:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.46921 * 2 1 4 4 C 1.32992 * 120.00441 * 82.99215 * 3 2 1 5 5 C 1.47105 * 119.99580 * 353.21374 * 4 3 2 6 6 O 1.21618 * 119.99919 * 2.89886 * 5 4 3 7 7 N 1.34778 * 120.00221 * 182.89966 * 5 4 3 8 8 C 1.47577 * 134.49529 * 179.97438 * 7 5 4 9 9 C 1.53942 * 86.11502 * 155.36124 * 8 7 5 10 10 O 1.42901 * 113.74512 * 269.15253 * 9 8 7 11 11 C 1.50704 * 113.74358 * 137.95558 * 9 8 7 12 12 H 1.08000 * 119.99699 * 4.44616 * 11 9 8 13 13 C 1.37878 * 120.00417 * 184.45091 * 11 9 8 14 14 N 1.31515 * 119.99894 * 185.25838 * 13 11 9 15 15 Si 1.86800 * 119.99815 * 5.25269 * 13 11 9 16 16 H 1.48498 * 109.47305 * 270.00198 * 15 13 11 17 17 H 1.48498 * 109.47034 * 30.00469 * 15 13 11 18 18 H 1.48504 * 109.46647 * 150.00183 * 15 13 11 19 19 C 1.47585 * 134.48717 * 359.97438 * 7 5 4 20 20 C 1.50704 * 120.00018 * 262.98402 * 3 2 1 21 21 C 1.53001 * 109.47400 * 275.00467 * 20 3 2 22 22 H 1.08996 * 109.46798 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47040 * 299.99937 * 1 2 3 24 24 H 1.08998 * 109.46623 * 60.00341 * 1 2 3 25 25 H 1.09002 * 109.46912 * 240.00107 * 2 1 3 26 26 H 1.09001 * 109.47023 * 120.00301 * 2 1 3 27 27 H 1.07992 * 120.00397 * 173.21441 * 4 3 2 28 28 H 1.08998 * 113.76463 * 41.06219 * 8 7 5 29 29 H 1.09000 * 113.87278 * 269.67594 * 8 7 5 30 30 H 0.96700 * 113.99980 * 172.66801 * 10 9 8 31 31 H 0.97001 * 119.99749 * 354.95804 * 14 13 11 32 32 H 1.09005 * 113.76759 * 90.33910 * 19 7 5 33 33 H 1.08997 * 113.77073 * 318.94609 * 19 7 5 34 34 H 1.09006 * 109.47151 * 35.00313 * 20 3 2 35 35 H 1.08995 * 109.47165 * 155.00436 * 20 3 2 36 36 H 1.09002 * 109.47293 * 59.99562 * 21 20 3 37 37 H 1.09004 * 109.47373 * 179.97438 * 21 20 3 38 38 H 1.08999 * 109.47193 * 300.00001 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1215 2.0946 1.1431 5 6 1.5920 1.5099 2.3847 6 8 1.1205 0.3889 2.3761 7 7 1.6294 2.2164 3.5319 8 6 1.2034 1.9570 4.9208 9 6 2.2610 2.9983 5.3290 10 8 3.5474 2.4370 5.5978 11 6 1.7966 3.9450 6.4057 12 1 0.8289 3.8074 6.8650 13 6 2.6070 4.9869 6.8042 14 7 2.2481 5.7503 7.8132 15 14 4.2146 5.3141 5.9110 16 1 5.3066 4.5443 6.5592 17 1 4.0872 4.8938 4.4925 18 1 4.5280 6.7644 5.9713 19 6 2.1131 3.5603 3.9035 20 6 2.4338 2.0781 -1.2954 21 6 3.8852 1.7199 -1.6207 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.5826 3.0710 1.1598 28 1 1.4245 0.9473 5.2667 29 1 0.1793 2.2644 5.1328 30 1 4.2407 3.0950 5.7449 31 1 1.3809 5.6272 8.2300 32 1 1.3562 4.3397 3.8148 33 1 3.0604 3.8308 3.4372 34 1 1.7844 1.7271 -2.0975 35 1 2.3394 3.1596 -1.1985 36 1 3.9796 0.6383 -1.7175 37 1 4.1755 2.1949 -2.5579 38 1 4.5346 2.0708 -0.8187 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793871411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:39 Heat of formation + Delta-G solvation = -54.916780 kcal Electronic energy + Delta-G solvation = -19183.217851 eV Core-core repulsion = 16219.670420 eV Total energy + Delta-G solvation = -2963.547431 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.44681 -39.78098 -37.26914 -36.10467 -34.65672 -32.83887 -31.63611 -29.91488 -27.49067 -26.82381 -25.10886 -24.14802 -22.06143 -20.60074 -19.99862 -19.09928 -18.22900 -17.66142 -16.81938 -16.43834 -16.18305 -15.68158 -15.19756 -15.03010 -14.75834 -14.59350 -14.30639 -13.99240 -13.85500 -13.57286 -13.42618 -13.03951 -12.99325 -12.58691 -12.52646 -12.15408 -12.08888 -11.83502 -11.63249 -11.61589 -11.25990 -11.00750 -10.65583 -10.32839 -10.12418 -9.52093 -8.82349 -6.60930 0.39595 1.38870 1.46959 1.62415 1.93015 2.30983 2.39915 2.84278 3.26018 3.58556 3.77572 3.81185 4.09045 4.27903 4.35638 4.38564 4.42096 4.44049 4.58379 4.61574 4.64637 4.66661 4.76742 4.82003 4.91462 4.97000 5.02021 5.10672 5.29744 5.35760 5.40838 5.55224 5.56053 5.71042 5.88917 6.36862 6.73747 6.83533 7.20093 7.25722 8.52059 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.029542 B = 0.005801 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.581737 B = 4825.490288 C = 5407.302046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 C -0.014 4.014 4 C -0.239 4.239 5 C 0.550 3.450 6 O -0.577 6.577 7 N -0.635 5.635 8 C 0.123 3.877 9 C 0.187 3.813 10 O -0.563 6.563 11 C -0.615 4.615 12 H 0.036 0.964 13 C -0.012 4.012 14 N -0.925 5.925 15 Si 1.064 2.936 16 H -0.258 1.258 17 H -0.225 1.225 18 H -0.282 1.282 19 C 0.076 3.924 20 C -0.092 4.092 21 C -0.145 4.145 22 H 0.056 0.944 23 H 0.034 0.966 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.137 0.863 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.363 0.637 31 H 0.258 0.742 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 -4.344 -19.629 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.137 4.137 3 C -0.016 4.016 4 C -0.260 4.260 5 C 0.345 3.655 6 O -0.461 6.461 7 N -0.368 5.368 8 C 0.000 4.000 9 C 0.146 3.854 10 O -0.373 6.373 11 C -0.653 4.653 12 H 0.054 0.946 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.884 3.116 16 H -0.183 1.183 17 H -0.149 1.149 18 H -0.208 1.208 19 C -0.046 4.046 20 C -0.129 4.129 21 C -0.203 4.203 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.155 0.845 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.214 0.786 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.744 -4.631 -19.852 20.726 hybrid contribution -1.677 -0.304 1.236 2.106 sum 2.067 -4.935 -18.616 19.370 Atomic orbital electron populations 1.21512 0.94458 1.01696 1.00857 1.20879 0.96922 0.93041 1.02828 1.22869 0.88827 0.95073 0.94811 1.22325 1.09072 1.03246 0.91313 1.18886 0.78755 0.84682 0.83156 1.90669 1.49308 1.20334 1.85759 1.50046 1.60628 1.18223 1.07918 1.23129 0.98340 0.99396 0.79111 1.20513 0.82053 0.91227 0.91619 1.86436 1.19330 1.37937 1.93642 1.22392 1.05426 1.13598 1.23878 0.94601 1.27320 1.06835 0.92221 0.94849 1.70910 1.22032 1.41994 1.21014 0.83976 0.71903 0.77881 0.77815 1.18339 1.14890 1.20799 1.24495 1.00124 0.84861 0.95162 1.20831 0.98401 1.00762 0.92902 1.21722 0.94134 1.02144 1.02271 0.92468 0.94689 0.91800 0.89813 0.91176 0.84529 0.91740 0.89121 0.78617 0.93295 0.88456 0.88776 0.88657 0.89792 0.92376 0.90214 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.32 71.98 0.67 -2.62 16 2 C -0.10 -2.54 5.36 29.85 0.16 -2.38 16 3 C -0.01 -0.33 4.62 -17.62 -0.08 -0.41 16 4 C -0.24 -7.00 9.39 23.43 0.22 -6.78 16 5 C 0.55 21.01 7.70 86.57 0.67 21.68 16 6 O -0.58 -24.30 11.89 -4.09 -0.05 -24.35 16 7 N -0.63 -25.49 3.61 -844.69 -3.05 -28.54 16 8 C 0.12 5.36 8.23 86.48 0.71 6.07 16 9 C 0.19 8.51 1.06 -10.88 -0.01 8.50 16 10 O -0.56 -25.72 13.42 -148.98 -2.00 -27.72 16 11 C -0.62 -32.65 9.04 25.60 0.23 -32.42 16 12 H 0.04 2.09 8.04 -2.91 -0.02 2.07 16 13 C -0.01 -0.64 5.47 84.65 0.46 -0.18 16 14 N -0.93 -54.15 13.70 21.45 0.29 -53.85 16 15 Si 1.06 42.66 24.81 68.60 1.70 44.36 16 16 H -0.26 -9.60 6.94 99.48 0.69 -8.91 16 17 H -0.23 -7.45 4.81 99.48 0.48 -6.97 16 18 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 19 C 0.08 2.93 6.60 86.48 0.57 3.50 16 20 C -0.09 -1.45 6.07 29.85 0.18 -1.27 16 21 C -0.15 -2.02 9.89 71.98 0.71 -1.31 16 22 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.03 1.12 6.23 -2.39 -0.01 1.11 16 24 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 26 H 0.07 2.29 5.93 -2.39 -0.01 2.27 16 27 H 0.14 3.49 7.90 -2.91 -0.02 3.47 16 28 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.09 3.83 8.09 -2.39 -0.02 3.81 16 30 H 0.36 14.85 4.30 -74.06 -0.32 14.53 16 31 H 0.26 15.37 8.72 -92.71 -0.81 14.56 16 32 H 0.10 3.61 8.09 -2.38 -0.02 3.59 16 33 H 0.09 3.19 6.50 -2.39 -0.02 3.18 16 34 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.08 1.21 8.03 -2.39 -0.02 1.19 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -65.74 305.96 1.84 -63.90 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.45 Total: 33.80 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 4.49 Total: -7.60 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -2.75 Total: -82.39 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -2.05 Total: -52.07 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.70 Total: 44.36 kcal Total: -65.74 1.84 -63.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793871411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.983 kcal (2) G-P(sol) polarization free energy of solvation -65.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds