Wall clock time and date at job start Sun Mar 29 2020 23:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00377 * 2 1 4 4 H 1.48503 * 109.47399 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47424 * 300.00693 * 3 2 1 6 6 H 1.48498 * 109.46788 * 60.00642 * 3 2 1 7 7 C 1.37886 * 119.99536 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99587 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00315 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.87935 * 62.38691 * 9 7 2 11 11 C 1.55144 * 110.99093 * 298.54729 * 9 7 2 12 12 C 1.54317 * 103.02016 * 206.22027 * 11 9 7 13 13 N 1.47439 * 107.23746 * 22.27853 * 12 11 9 14 14 C 1.46896 * 111.00332 * 123.25609 * 13 12 11 15 15 C 1.53008 * 109.46591 * 69.87756 * 14 13 12 16 16 H 1.08999 * 109.73703 * 59.40061 * 15 14 13 17 17 C 1.53506 * 109.70433 * 180.02562 * 15 14 13 18 18 C 1.53255 * 108.15598 * 182.08765 * 17 15 14 19 19 C 1.50438 * 109.44052 * 313.17715 * 18 17 15 20 20 C 1.30688 * 122.49592 * 17.45853 * 19 18 17 21 21 O 1.35124 * 123.34534 * 359.61350 * 20 19 18 22 22 C 1.47855 * 108.56392 * 0.99180 * 13 12 11 23 23 H 0.97000 * 120.00019 * 359.97438 * 1 2 3 24 24 H 0.96699 * 114.00259 * 297.61782 * 10 9 7 25 25 H 1.08995 * 110.70795 * 87.82977 * 11 9 7 26 26 H 1.09007 * 110.70300 * 324.60189 * 11 9 7 27 27 H 1.09002 * 109.88322 * 262.87569 * 12 11 9 28 28 H 1.09000 * 110.02779 * 141.76417 * 12 11 9 29 29 H 1.08999 * 109.47020 * 309.88179 * 14 13 12 30 30 H 1.08998 * 109.47244 * 189.87559 * 14 13 12 31 31 H 1.09000 * 109.72559 * 301.75432 * 17 15 14 32 32 H 1.08997 * 109.72409 * 62.42454 * 17 15 14 33 33 H 1.09008 * 109.47506 * 73.16494 * 18 17 15 34 34 H 1.09001 * 109.47452 * 193.18556 * 18 17 15 35 35 H 1.07998 * 118.75383 * 197.48076 * 19 18 17 36 36 H 1.08004 * 118.32867 * 179.61702 * 20 19 18 37 37 H 1.09000 * 110.36994 * 94.73217 * 22 13 12 38 38 H 1.09001 * 110.37279 * 217.07450 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3962 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4599 -2.6305 -1.1833 11 6 0.3741 -2.6346 1.2722 12 6 0.2532 -4.1627 1.4500 13 7 1.3909 -4.7765 0.7409 14 6 2.1848 -5.6167 1.6472 15 6 1.3814 -6.8640 2.0212 16 1 1.1319 -7.4249 1.1205 17 6 2.2061 -7.7460 2.9691 18 6 1.3914 -9.0067 3.2782 19 6 -0.0197 -8.6181 3.6263 20 6 -0.5186 -7.4469 3.3310 21 8 0.1811 -6.4798 2.6977 22 6 2.2178 -3.6992 0.1565 23 1 -0.4850 0.8400 0.0004 24 1 -0.2256 -1.9548 -1.2751 25 1 -0.6066 -2.1862 1.1140 26 1 0.8707 -2.1846 2.1319 27 1 -0.6848 -4.5130 1.0193 28 1 0.2938 -4.4197 2.5085 29 1 2.4227 -5.0537 2.5497 30 1 3.1083 -5.9147 1.1508 31 1 3.1451 -8.0231 2.4900 32 1 2.4094 -7.2037 3.8924 33 1 1.3839 -9.6580 2.4041 34 1 1.8416 -9.5330 4.1199 35 1 -0.6440 -9.3341 4.1401 36 1 -1.5423 -7.2414 3.6072 37 1 3.0361 -3.4417 0.8290 38 1 2.6059 -4.0036 -0.8156 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843425189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:07 Heat of formation + Delta-G solvation = -90.962521 kcal Electronic energy + Delta-G solvation = -19495.542207 eV Core-core repulsion = 16530.431715 eV Total energy + Delta-G solvation = -2965.110492 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.18614 -39.78835 -36.59403 -34.82577 -34.17957 -33.39134 -30.88250 -29.84093 -27.92991 -26.26419 -24.50254 -23.61105 -21.54623 -21.37958 -19.80995 -19.00605 -17.72518 -17.04598 -16.93988 -16.85477 -16.00436 -15.77580 -15.65168 -15.02403 -14.55935 -14.29106 -14.26221 -13.79941 -13.69819 -13.44422 -13.12795 -13.01373 -12.85997 -12.71987 -12.49992 -12.21413 -12.20375 -11.75415 -11.66337 -11.54500 -11.23537 -10.99655 -10.58408 -10.05483 -9.25541 -9.14756 -8.21068 -6.37440 1.39116 1.42126 1.45732 1.52930 2.38120 2.57868 3.02739 3.10358 3.76114 3.86217 4.01882 4.08313 4.11723 4.18216 4.36806 4.40576 4.51899 4.54853 4.63420 4.70150 4.78933 4.83786 4.92116 4.97505 5.02109 5.14916 5.23614 5.31480 5.45283 5.50644 5.55338 5.71837 5.80890 5.98831 6.23696 6.30369 6.68966 6.79347 7.34277 7.45409 8.84518 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.046218 B = 0.004919 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.679347 B = 5690.676032 C = 5841.379503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.030 3.970 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.562 4.562 8 H 0.056 0.944 9 C 0.233 3.767 10 O -0.588 6.588 11 C -0.137 4.137 12 C 0.069 3.931 13 N -0.533 5.533 14 C 0.056 3.944 15 C 0.097 3.903 16 H 0.070 0.930 17 C -0.148 4.148 18 C -0.081 4.081 19 C -0.288 4.288 20 C 0.033 3.967 21 O -0.334 6.334 22 C 0.065 3.935 23 H 0.268 0.732 24 H 0.371 0.629 25 H 0.053 0.947 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.165 0.835 37 H 0.052 0.948 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.291 -14.540 7.497 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.171 4.171 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.600 4.600 8 H 0.074 0.926 9 C 0.193 3.807 10 O -0.395 6.395 11 C -0.177 4.177 12 C -0.059 4.059 13 N -0.257 5.257 14 C -0.073 4.073 15 C 0.040 3.960 16 H 0.088 0.912 17 C -0.186 4.186 18 C -0.117 4.117 19 C -0.308 4.308 20 C -0.029 4.029 21 O -0.249 6.249 22 C -0.062 4.062 23 H 0.077 0.923 24 H 0.219 0.781 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.151 0.849 36 H 0.182 0.818 37 H 0.071 0.929 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.321 -15.081 6.996 16.786 hybrid contribution 0.046 1.923 0.673 2.038 sum 2.367 -13.158 7.669 15.412 Atomic orbital electron populations 1.69848 1.06947 1.28030 1.50289 1.25722 0.95809 1.02357 0.93228 0.85469 0.78969 0.79211 0.77708 1.19376 1.20435 1.20405 1.21868 0.93562 0.92149 1.52462 0.92592 1.19799 0.87506 0.91482 0.81874 1.86129 1.51360 1.56458 1.45582 1.23101 1.00712 0.94640 0.99203 1.22628 0.93883 0.92501 0.96883 1.63514 1.08978 1.20800 1.32376 1.22455 0.96284 0.93445 0.95084 1.22518 0.83912 0.95260 0.94267 0.91197 1.22229 0.99734 0.96842 0.99806 1.20387 0.92277 0.96773 1.02311 1.22741 0.99233 0.98975 1.09802 1.22424 0.96537 0.89356 0.94574 1.86076 1.37523 1.35659 1.65611 1.22852 0.94822 0.90016 0.98515 0.92257 0.78103 0.92786 0.94092 0.92954 0.91704 0.94554 0.87661 0.88296 0.91266 0.90636 0.89202 0.84885 0.81796 0.92934 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.04 10.75 21.45 0.23 -49.81 16 2 C 0.03 1.59 5.29 84.66 0.45 2.03 16 3 Si 0.96 42.71 29.54 68.60 2.03 44.73 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.56 -30.93 8.27 25.60 0.21 -30.72 16 8 H 0.06 3.04 7.79 -2.91 -0.02 3.02 16 9 C 0.23 12.05 0.87 -10.16 -0.01 12.04 16 10 O -0.59 -32.26 13.16 -148.98 -1.96 -34.22 16 11 C -0.14 -6.72 5.38 31.78 0.17 -6.55 16 12 C 0.07 2.87 5.57 86.65 0.48 3.36 16 13 N -0.53 -21.08 5.16 -885.53 -4.57 -25.65 16 14 C 0.06 1.70 4.50 86.31 0.39 2.09 16 15 C 0.10 2.59 3.10 30.77 0.10 2.69 16 16 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 17 C -0.15 -2.95 5.54 30.85 0.17 -2.78 16 18 C -0.08 -1.42 6.23 29.85 0.19 -1.24 16 19 C -0.29 -5.77 9.97 25.88 0.26 -5.51 16 20 C 0.03 0.80 10.88 68.10 0.74 1.54 16 21 O -0.33 -9.99 6.99 -84.00 -0.59 -10.58 16 22 C 0.07 2.89 5.86 86.77 0.51 3.40 16 23 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 24 H 0.37 20.63 7.56 -74.06 -0.56 20.07 16 25 H 0.05 2.83 7.53 -2.39 -0.02 2.81 16 26 H 0.04 2.05 8.03 -2.38 -0.02 2.03 16 27 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.56 5.82 -2.39 -0.01 2.54 16 29 H 0.04 1.14 7.96 -2.39 -0.02 1.12 16 30 H 0.11 2.75 8.07 -2.39 -0.02 2.73 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.05 2.22 7.70 -2.39 -0.02 2.20 16 38 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -60.68 300.24 -0.73 -61.41 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.48 Total: 33.76 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 3.65 Total: -19.65 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -4.34 Total: -75.46 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -2.55 Total: -44.79 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -60.68 -0.73 -61.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843425189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.557 kcal (2) G-P(sol) polarization free energy of solvation -60.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds