Wall clock time and date at job start Mon Mar 30 2020 00:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32999 * 119.99618 * 2 1 4 4 C 1.50702 * 119.99327 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46962 * 94.56587 * 4 3 2 6 6 C 1.47092 * 120.00192 * 359.97438 * 3 2 1 7 7 O 1.21614 * 120.00160 * 263.16220 * 6 3 2 8 8 N 1.34784 * 119.99937 * 83.16631 * 6 3 2 9 9 C 1.47019 * 125.64794 * 354.97523 * 8 6 3 10 10 C 1.54373 * 107.28696 * 181.12822 * 9 8 6 11 11 C 1.55153 * 102.92073 * 22.13901 * 10 9 8 12 12 O 1.42894 * 111.00827 * 82.63863 * 11 10 9 13 13 C 1.50701 * 111.00102 * 206.45416 * 11 10 9 14 14 H 1.08003 * 120.00094 * 115.41807 * 13 11 10 15 15 C 1.37870 * 120.00106 * 295.13912 * 13 11 10 16 16 N 1.31519 * 120.00189 * 0.28073 * 15 13 11 17 17 Si 1.86800 * 120.00210 * 180.27469 * 15 13 11 18 18 H 1.48499 * 109.46957 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46939 * 119.99922 * 17 15 13 20 20 H 1.48497 * 109.47622 * 240.00210 * 17 15 13 21 21 C 1.47419 * 125.64610 * 175.01377 * 8 6 3 22 22 H 1.08996 * 109.47231 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46987 * 300.00021 * 1 2 3 24 24 H 1.08997 * 109.46841 * 60.00224 * 1 2 3 25 25 H 1.08000 * 120.00023 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.46963 * 214.55958 * 4 3 2 27 27 H 1.09001 * 109.47312 * 334.56587 * 4 3 2 28 28 H 1.09004 * 109.46858 * 295.06907 * 5 4 3 29 29 H 1.09001 * 109.47665 * 55.06341 * 5 4 3 30 30 H 1.08996 * 109.47273 * 175.07126 * 5 4 3 31 31 H 1.08995 * 109.88115 * 300.51041 * 9 8 6 32 32 H 1.08995 * 109.88346 * 61.67765 * 9 8 6 33 33 H 1.09006 * 110.70239 * 263.78975 * 10 9 8 34 34 H 1.09001 * 110.75223 * 140.50771 * 10 9 8 35 35 H 0.96705 * 113.99506 * 64.57841 * 12 11 10 36 36 H 0.96995 * 120.00100 * 180.02562 * 16 15 13 37 37 H 1.09001 * 110.37214 * 37.00061 * 21 8 6 38 38 H 1.09000 * 110.46361 * 274.72258 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 4.1895 1.2663 -1.4372 6 6 1.4365 2.4257 -0.0006 7 8 1.2414 3.0148 -1.0465 8 7 0.9788 2.9401 1.1581 9 6 1.0517 2.2873 2.4734 10 6 0.3803 3.2327 3.4926 11 6 -0.5348 4.1118 2.5998 12 8 -1.7699 3.4487 2.3226 13 6 -0.7778 5.4568 3.2346 14 1 -0.4130 6.3536 2.7560 15 6 -1.4708 5.5429 4.4234 16 7 -1.9151 4.4508 5.0062 17 14 -1.7787 7.2107 5.2063 18 1 -1.1814 8.2734 4.3584 19 1 -3.2412 7.4383 5.3274 20 1 -1.1588 7.2464 6.5553 21 6 0.3215 4.2501 1.3162 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.0471 -0.9353 0.0004 26 1 4.0421 1.9982 0.5835 27 1 4.0421 0.2238 0.4423 28 1 3.9002 0.3770 -1.9973 29 1 3.7560 2.1488 -1.9076 30 1 5.2759 1.3543 -1.4311 31 1 0.5201 1.3362 2.4451 32 1 2.0935 2.1241 2.7491 33 1 1.1263 3.8442 4.0004 34 1 -0.2113 2.6672 4.2125 35 1 -2.3182 3.2957 3.1043 36 1 -2.4029 4.5115 5.8424 37 1 -0.3148 4.4616 0.4568 38 1 1.0653 5.0373 1.4394 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844019115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:11 Heat of formation + Delta-G solvation = -82.035992 kcal Electronic energy + Delta-G solvation = -19600.699027 eV Core-core repulsion = 16635.975619 eV Total energy + Delta-G solvation = -2964.723408 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.67581 -37.38009 -35.44819 -34.24027 -32.19461 -31.96662 -29.78206 -28.33991 -27.06799 -25.16598 -22.84737 -22.51297 -20.95632 -19.62149 -17.90371 -17.13611 -16.00415 -15.46738 -15.25600 -14.98194 -14.42293 -14.22134 -13.72353 -13.43170 -13.22252 -12.86086 -12.74533 -12.28457 -12.11452 -12.03420 -11.70619 -11.54842 -11.35657 -11.27662 -11.21267 -10.88528 -10.86335 -10.60305 -10.46807 -10.04407 -9.46883 -9.29930 -8.79810 -8.70151 -8.22090 -7.96330 -6.31011 -4.38635 1.97000 3.07741 3.17504 3.26788 3.31226 3.66756 4.25449 4.79327 4.91936 4.98883 5.21817 5.34378 5.39364 5.51376 5.56921 5.74340 5.76486 5.82033 5.86342 5.92694 6.01784 6.03823 6.20513 6.25692 6.30633 6.42848 6.58752 6.67850 6.74257 6.89055 6.98844 7.28789 7.32053 7.71827 7.99218 8.15764 8.62669 8.67389 9.29966 9.41389 10.76701 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.037064 B = 0.005678 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.274732 B = 4929.897857 C = 5137.308449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C -0.158 4.158 4 C -0.072 4.072 5 C -0.147 4.147 6 C 0.567 3.433 7 O -0.553 6.553 8 N -0.601 5.601 9 C 0.101 3.899 10 C -0.138 4.138 11 C 0.249 3.751 12 O -0.583 6.583 13 C -0.534 4.534 14 H 0.065 0.935 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.903 3.097 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.118 3.882 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.383 0.617 36 H 0.268 0.732 37 H 0.071 0.929 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.823 -8.417 -3.602 12.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.137 4.137 3 C -0.161 4.161 4 C -0.110 4.110 5 C -0.204 4.204 6 C 0.356 3.644 7 O -0.432 6.432 8 N -0.333 5.333 9 C -0.021 4.021 10 C -0.177 4.177 11 C 0.208 3.792 12 O -0.392 6.392 13 C -0.573 4.573 14 H 0.084 0.916 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.004 4.004 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.138 0.862 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.233 0.767 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.880 -8.166 -4.669 12.271 hybrid contribution -0.375 0.741 1.235 1.488 sum 7.505 -7.425 -3.434 11.101 Atomic orbital electron populations 1.21013 0.92538 1.02437 1.03411 1.23254 0.96406 0.96457 0.97578 1.21479 0.96345 0.93329 1.04914 1.20387 0.89914 1.02595 0.98086 1.21737 1.00176 1.02689 0.95793 1.18033 0.78821 0.84867 0.82698 1.90757 1.59391 1.62133 1.30930 1.48604 1.57440 1.20085 1.07126 1.22173 0.99468 0.97132 0.83355 1.23206 0.99579 0.97688 0.97180 1.19592 0.81589 0.90268 0.87744 1.86121 1.33018 1.81020 1.39057 1.21510 1.36513 0.92710 1.06544 0.91647 1.24982 0.94369 0.97290 0.96326 1.69656 1.37692 1.27427 1.18863 0.86362 0.78120 0.83537 0.78966 1.19572 1.20760 1.20824 1.22388 0.94987 0.83084 0.99908 0.91799 0.90356 0.91256 0.86224 0.91223 0.90834 0.92713 0.91848 0.92644 0.92334 0.92950 0.91388 0.89718 0.76661 0.92219 0.91101 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.16 36.01 0.33 -1.63 16 2 C -0.12 -1.58 9.94 -36.12 -0.36 -1.94 16 3 C -0.16 -2.42 4.19 -102.85 -0.43 -2.85 16 4 C -0.07 -0.90 6.09 -27.88 -0.17 -1.07 16 5 C -0.15 -1.72 9.89 37.16 0.37 -1.36 16 6 C 0.57 11.18 6.08 -12.67 -0.08 11.10 16 7 O -0.55 -12.74 17.34 5.27 0.09 -12.65 16 8 N -0.60 -12.11 3.33 -171.89 -0.57 -12.69 16 9 C 0.10 1.86 6.41 -3.04 -0.02 1.84 16 10 C -0.14 -2.93 5.52 -24.87 -0.14 -3.07 16 11 C 0.25 5.96 0.88 -89.62 -0.08 5.88 16 12 O -0.58 -14.76 13.17 -35.23 -0.46 -15.23 16 13 C -0.53 -13.80 8.25 -34.44 -0.28 -14.09 16 14 H 0.07 1.69 7.78 -52.48 -0.41 1.28 16 15 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 16 N -0.90 -22.81 10.76 55.43 0.60 -22.21 16 17 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.12 2.66 6.11 -2.53 -0.02 2.65 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.08 1.27 6.42 -51.93 -0.33 0.94 16 24 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 25 H 0.12 1.24 8.02 -52.49 -0.42 0.82 16 26 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 27 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.03 6.55 -51.93 -0.34 0.69 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.45 8.03 -51.93 -0.42 1.04 16 34 H 0.08 1.88 7.69 -51.93 -0.40 1.48 16 35 H 0.38 9.71 7.24 45.56 0.33 10.03 16 36 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.07 1.71 7.99 -51.93 -0.41 1.30 16 38 H 0.07 1.55 8.02 -51.93 -0.42 1.14 16 LS Contribution 314.27 15.07 4.74 4.74 Total: -1.00 -28.35 314.27 -6.93 -35.28 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.33 Total: 10.54 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.97 Total: -2.78 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.02 Total: -34.89 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.37 Total: -27.88 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.35 -6.93 -35.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844019115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.757 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds