Wall clock time and date at job start Mon Mar 30 2020 00:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32999 * 119.99618 * 2 1 4 4 C 1.50702 * 119.99327 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46962 * 94.56587 * 4 3 2 6 6 C 1.47092 * 120.00192 * 359.97438 * 3 2 1 7 7 O 1.21614 * 120.00160 * 263.16220 * 6 3 2 8 8 N 1.34784 * 119.99937 * 83.16631 * 6 3 2 9 9 C 1.47019 * 125.64794 * 354.97523 * 8 6 3 10 10 C 1.54373 * 107.28696 * 181.12822 * 9 8 6 11 11 C 1.55153 * 102.92073 * 22.13901 * 10 9 8 12 12 O 1.42894 * 111.00827 * 82.63863 * 11 10 9 13 13 C 1.50701 * 111.00102 * 206.45416 * 11 10 9 14 14 H 1.08003 * 120.00094 * 115.41807 * 13 11 10 15 15 C 1.37870 * 120.00106 * 295.13912 * 13 11 10 16 16 N 1.31519 * 120.00189 * 0.28073 * 15 13 11 17 17 Si 1.86800 * 120.00210 * 180.27469 * 15 13 11 18 18 H 1.48499 * 109.46957 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46939 * 119.99922 * 17 15 13 20 20 H 1.48497 * 109.47622 * 240.00210 * 17 15 13 21 21 C 1.47419 * 125.64610 * 175.01377 * 8 6 3 22 22 H 1.08996 * 109.47231 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46987 * 300.00021 * 1 2 3 24 24 H 1.08997 * 109.46841 * 60.00224 * 1 2 3 25 25 H 1.08000 * 120.00023 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.46963 * 214.55958 * 4 3 2 27 27 H 1.09001 * 109.47312 * 334.56587 * 4 3 2 28 28 H 1.09004 * 109.46858 * 295.06907 * 5 4 3 29 29 H 1.09001 * 109.47665 * 55.06341 * 5 4 3 30 30 H 1.08996 * 109.47273 * 175.07126 * 5 4 3 31 31 H 1.08995 * 109.88115 * 300.51041 * 9 8 6 32 32 H 1.08995 * 109.88346 * 61.67765 * 9 8 6 33 33 H 1.09006 * 110.70239 * 263.78975 * 10 9 8 34 34 H 1.09001 * 110.75223 * 140.50771 * 10 9 8 35 35 H 0.96705 * 113.99506 * 64.57841 * 12 11 10 36 36 H 0.96995 * 120.00100 * 180.02562 * 16 15 13 37 37 H 1.09001 * 110.37214 * 37.00061 * 21 8 6 38 38 H 1.09000 * 110.46361 * 274.72258 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 4.1895 1.2663 -1.4372 6 6 1.4365 2.4257 -0.0006 7 8 1.2414 3.0148 -1.0465 8 7 0.9788 2.9401 1.1581 9 6 1.0517 2.2873 2.4734 10 6 0.3803 3.2327 3.4926 11 6 -0.5348 4.1118 2.5998 12 8 -1.7699 3.4487 2.3226 13 6 -0.7778 5.4568 3.2346 14 1 -0.4130 6.3536 2.7560 15 6 -1.4708 5.5429 4.4234 16 7 -1.9151 4.4508 5.0062 17 14 -1.7787 7.2107 5.2063 18 1 -1.1814 8.2734 4.3584 19 1 -3.2412 7.4383 5.3274 20 1 -1.1588 7.2464 6.5553 21 6 0.3215 4.2501 1.3162 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.0471 -0.9353 0.0004 26 1 4.0421 1.9982 0.5835 27 1 4.0421 0.2238 0.4423 28 1 3.9002 0.3770 -1.9973 29 1 3.7560 2.1488 -1.9076 30 1 5.2759 1.3543 -1.4311 31 1 0.5201 1.3362 2.4451 32 1 2.0935 2.1241 2.7491 33 1 1.1263 3.8442 4.0004 34 1 -0.2113 2.6672 4.2125 35 1 -2.3182 3.2957 3.1043 36 1 -2.4029 4.5115 5.8424 37 1 -0.3148 4.4616 0.4568 38 1 1.0653 5.0373 1.4394 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844019115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:10 Heat of formation + Delta-G solvation = -100.754135 kcal Electronic energy + Delta-G solvation = -19601.510707 eV Core-core repulsion = 16635.975619 eV Total energy + Delta-G solvation = -2965.535088 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24413 -39.09252 -36.69865 -36.05020 -34.18582 -32.98132 -31.51401 -30.07394 -28.30512 -26.94276 -24.42244 -23.48624 -22.44157 -21.44387 -19.49020 -19.01030 -17.46720 -17.01789 -16.88889 -16.59824 -16.01076 -15.67851 -15.15867 -14.81201 -14.69599 -14.30904 -13.94997 -13.76480 -13.74468 -13.51730 -13.23796 -13.04785 -13.03210 -12.75337 -12.57287 -12.48802 -12.26711 -12.22831 -11.87603 -11.79706 -11.31780 -10.86675 -10.63903 -10.16607 -9.92007 -9.61178 -8.25563 -6.40199 0.84424 1.40553 1.45166 1.54906 1.56062 2.13158 2.40225 2.99424 3.54088 3.79126 3.86914 4.00587 4.25170 4.28038 4.34720 4.38443 4.47453 4.53950 4.57503 4.60996 4.70797 4.84893 4.87774 4.99002 5.07786 5.12257 5.15383 5.25773 5.38477 5.42906 5.50558 5.51063 5.67920 5.76094 6.05817 6.58372 6.64260 7.09518 7.30848 7.41099 8.80960 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.037064 B = 0.005678 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.274732 B = 4929.897857 C = 5137.308449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.179 4.179 4 C -0.068 4.068 5 C -0.145 4.145 6 C 0.562 3.438 7 O -0.597 6.597 8 N -0.604 5.604 9 C 0.110 3.890 10 C -0.127 4.127 11 C 0.236 3.764 12 O -0.594 6.594 13 C -0.562 4.562 14 H 0.054 0.946 15 C 0.038 3.962 16 N -0.908 5.908 17 Si 0.960 3.040 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.274 1.274 21 C 0.122 3.878 22 H 0.096 0.904 23 H 0.055 0.945 24 H 0.044 0.956 25 H 0.166 0.834 26 H 0.061 0.939 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.379 0.621 36 H 0.272 0.728 37 H 0.043 0.957 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -10.329 -2.805 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C -0.181 4.181 4 C -0.105 4.105 5 C -0.202 4.202 6 C 0.353 3.647 7 O -0.479 6.479 8 N -0.335 5.335 9 C -0.011 4.011 10 C -0.166 4.166 11 C 0.196 3.804 12 O -0.403 6.403 13 C -0.600 4.600 14 H 0.072 0.928 15 C -0.163 4.163 16 N -0.547 5.547 17 Si 0.786 3.214 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.199 1.199 21 C -0.001 4.001 22 H 0.115 0.885 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.183 0.817 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.230 0.770 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.350 -10.098 -3.858 14.293 hybrid contribution -0.908 1.334 0.955 1.875 sum 8.443 -8.765 -2.903 12.511 Atomic orbital electron populations 1.21040 0.93713 1.03857 1.01105 1.23610 0.95713 0.97470 0.94600 1.21517 0.97785 0.91214 1.07619 1.20468 0.87526 1.04167 0.98372 1.21730 1.01371 1.01582 0.95493 1.18924 0.78117 0.86062 0.81572 1.90724 1.60980 1.63846 1.32397 1.48691 1.57239 1.19248 1.08297 1.22174 1.01228 0.96354 0.81383 1.22991 0.98870 0.97550 0.97175 1.19748 0.81560 0.90277 0.88799 1.86112 1.33845 1.81195 1.39121 1.21708 1.37719 0.93239 1.07359 0.92766 1.25587 0.93959 1.00269 0.96504 1.69710 1.37394 1.28584 1.18993 0.85474 0.77806 0.79861 0.78243 1.19941 1.20635 1.19896 1.22168 0.94749 0.84911 0.98272 0.88518 0.92596 0.93710 0.81668 0.92015 0.87134 0.91598 0.95278 0.90444 0.91137 0.89686 0.91687 0.90675 0.77026 0.91840 0.93881 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.16 71.24 0.65 -3.09 16 2 C -0.10 -2.22 9.94 24.52 0.24 -1.98 16 3 C -0.18 -5.07 4.19 -18.71 -0.08 -5.15 16 4 C -0.07 -1.46 6.09 29.85 0.18 -1.28 16 5 C -0.14 -3.06 9.89 71.98 0.71 -2.35 16 6 C 0.56 22.20 6.08 86.57 0.53 22.73 16 7 O -0.60 -28.50 17.34 -4.08 -0.07 -28.57 16 8 N -0.60 -24.42 3.33 -815.98 -2.71 -27.14 16 9 C 0.11 3.89 6.41 86.75 0.56 4.44 16 10 C -0.13 -5.38 5.52 31.80 0.18 -5.20 16 11 C 0.24 11.58 0.88 -10.15 -0.01 11.57 16 12 O -0.59 -30.88 13.17 -148.98 -1.96 -32.84 16 13 C -0.56 -29.63 8.25 25.60 0.21 -29.41 16 14 H 0.05 2.89 7.78 -2.91 -0.02 2.87 16 15 C 0.04 1.94 5.29 84.65 0.45 2.39 16 16 N -0.91 -46.05 10.76 21.45 0.23 -45.82 16 17 Si 0.96 41.00 29.54 68.60 2.03 43.03 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 C 0.12 5.70 6.11 86.86 0.53 6.23 16 22 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.06 1.76 6.42 -2.39 -0.02 1.74 16 24 H 0.04 1.41 8.09 -2.39 -0.02 1.39 16 25 H 0.17 2.42 8.02 -2.91 -0.02 2.39 16 26 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 27 H 0.11 1.61 8.01 -2.39 -0.02 1.59 16 28 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 2.33 6.55 -2.39 -0.02 2.32 16 32 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.06 2.75 8.03 -2.38 -0.02 2.73 16 34 H 0.07 3.31 7.69 -2.39 -0.02 3.29 16 35 H 0.38 19.72 7.24 -74.05 -0.54 19.18 16 36 H 0.27 13.08 8.31 -92.71 -0.77 12.30 16 37 H 0.04 2.20 7.99 -2.39 -0.02 2.19 16 38 H 0.07 3.31 8.02 -2.39 -0.02 3.29 16 Total: -1.00 -63.15 314.27 2.17 -60.98 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.51 Total: 31.47 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 4.15 Total: -1.11 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -2.48 Total: -72.96 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -2.03 Total: -61.42 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -63.15 2.17 -60.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844019115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.770 kcal (2) G-P(sol) polarization free energy of solvation -63.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds