Wall clock time and date at job start Mon Mar 30 2020 00:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46877 * 2 1 4 4 C 1.53008 * 109.46972 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46890 * 179.97438 * 4 3 2 6 6 C 1.37096 * 120.00020 * 90.00371 * 5 4 3 7 7 H 1.07995 * 119.99847 * 221.48347 * 6 5 4 8 8 C 1.38950 * 120.00033 * 41.47894 * 6 5 4 9 9 N 1.31409 * 119.99984 * 7.92454 * 8 6 5 10 10 Si 1.86802 * 119.99826 * 187.92505 * 8 6 5 11 11 H 1.48497 * 109.47489 * 90.00164 * 10 8 6 12 12 H 1.48500 * 109.47154 * 210.00048 * 10 8 6 13 13 H 1.48501 * 109.47321 * 329.99838 * 10 8 6 14 14 C 1.34775 * 119.99898 * 269.99797 * 5 4 3 15 15 O 1.21292 * 120.00247 * 4.31930 * 14 5 4 16 16 C 1.50694 * 120.00049 * 184.31836 * 14 5 4 17 17 H 1.09008 * 115.50715 * 331.77800 * 16 14 5 18 18 C 1.52997 * 117.43939 * 117.15592 * 16 14 5 19 19 H 1.09004 * 119.80270 * 355.36580 * 18 16 14 20 20 C 1.54533 * 118.03573 * 198.16919 * 18 16 14 21 21 O 1.44424 * 104.73033 * 273.03987 * 20 18 16 22 22 C 1.44430 * 105.27012 * 40.52631 * 21 20 18 23 23 C 1.53000 * 117.43523 * 186.41674 * 16 14 5 24 24 H 1.09006 * 119.80973 * 5.64376 * 23 16 14 25 25 H 1.09006 * 109.47485 * 300.00037 * 1 2 3 26 26 H 1.09003 * 109.47035 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46957 * 60.00033 * 1 2 3 28 28 H 1.08998 * 109.47128 * 119.99199 * 2 1 3 29 29 H 1.08996 * 109.47466 * 240.00001 * 2 1 3 30 30 H 1.08998 * 109.47300 * 299.99757 * 3 2 1 31 31 H 1.08997 * 109.47440 * 60.00443 * 3 2 1 32 32 H 1.08998 * 109.47057 * 300.00086 * 4 3 2 33 33 H 1.08996 * 109.46897 * 59.99670 * 4 3 2 34 34 H 0.96999 * 119.99620 * 174.99429 * 9 8 6 35 35 H 1.08997 * 110.39601 * 154.23871 * 20 18 16 36 36 H 1.09003 * 110.51118 * 31.90047 * 20 18 16 37 37 H 1.09001 * 110.36694 * 200.65466 * 22 21 20 38 38 H 1.09004 * 110.37422 * 78.32382 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2863 3.4708 1.1870 7 1 3.9943 4.5040 1.3036 8 6 4.8929 2.7972 2.2401 9 7 5.3882 1.5946 2.0524 10 14 5.0043 3.6011 3.9226 11 1 3.8007 3.2516 4.7190 12 1 6.2199 3.1155 4.6237 13 1 5.0809 5.0755 3.7626 14 6 4.2834 3.4584 -1.1675 15 8 4.0080 2.9148 -2.2162 16 6 4.8772 4.8435 -1.1699 17 1 4.6649 5.4468 -0.2872 18 6 6.2431 5.0237 -1.8351 19 1 6.7797 4.1543 -2.2150 20 6 7.0577 6.2907 -1.4897 21 8 6.5922 7.2917 -2.4209 22 6 5.1628 7.1012 -2.5011 23 6 4.9688 5.5688 -2.5139 24 1 4.5281 5.1189 -3.4037 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.9329 0.9289 0.8908 33 1 3.9336 0.9286 -0.8891 34 1 5.8754 1.1539 2.7661 35 1 8.1229 6.1076 -1.6305 36 1 6.8595 6.6046 -0.4648 37 1 4.7724 7.5408 -3.4190 38 1 4.6722 7.5386 -1.6315 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142641766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:38 Heat of formation + Delta-G solvation = -59.261810 kcal Electronic energy + Delta-G solvation = -19246.502280 eV Core-core repulsion = 16282.766435 eV Total energy + Delta-G solvation = -2963.735846 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09587 -38.21673 -35.47682 -33.96353 -33.86280 -31.49375 -28.61907 -28.41850 -25.61017 -24.91342 -23.02814 -21.10156 -20.25314 -20.21244 -19.11839 -17.32667 -16.18641 -15.58916 -15.05462 -14.85880 -14.71548 -14.46936 -14.27569 -13.78066 -13.11420 -13.00887 -12.44255 -12.30049 -12.16657 -11.89436 -11.52206 -11.39304 -11.21176 -11.13066 -10.99899 -10.56128 -10.50317 -10.33022 -10.22579 -9.94113 -9.75389 -9.61645 -9.31962 -9.09597 -8.51732 -7.48973 -6.36068 -4.19520 3.06405 3.16671 3.17966 3.44987 3.99236 4.25789 4.27712 4.50575 4.89951 5.15573 5.25064 5.33109 5.37835 5.50612 5.58568 5.60789 5.66076 5.68910 5.90237 5.96504 6.07885 6.13544 6.25307 6.26257 6.40271 6.44930 6.49462 6.59165 6.69721 6.76325 6.86915 6.92324 7.15309 7.30772 7.57430 7.94994 8.34483 9.02517 9.45348 9.88320 10.62427 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.007824 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.021284 B = 3577.947536 C = 4893.841718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.107 3.893 5 N -0.431 5.431 6 C -0.334 4.334 7 H 0.087 0.913 8 C 0.045 3.955 9 N -0.869 5.869 10 Si 0.919 3.081 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.498 3.502 15 O -0.603 6.603 16 C -0.106 4.106 17 H 0.118 0.882 18 C -0.166 4.166 19 H 0.119 0.881 20 C 0.075 3.925 21 O -0.380 6.380 22 C 0.075 3.925 23 C -0.181 4.181 24 H 0.126 0.874 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.049 0.951 34 H 0.271 0.729 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 3.950 -1.466 4.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.016 4.016 5 N -0.148 5.148 6 C -0.462 4.462 7 H 0.104 0.896 8 C -0.160 4.160 9 N -0.506 5.506 10 Si 0.745 3.255 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.194 1.194 14 C 0.286 3.714 15 O -0.489 6.489 16 C -0.127 4.127 17 H 0.136 0.864 18 C -0.185 4.185 19 H 0.137 0.863 20 C -0.001 4.001 21 O -0.299 6.299 22 C -0.002 4.002 23 C -0.200 4.200 24 H 0.144 0.856 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.869 3.646 -1.923 4.526 hybrid contribution -0.012 0.095 1.108 1.112 sum -1.881 3.741 -0.815 4.265 Atomic orbital electron populations 1.21758 0.96709 1.00631 1.01438 1.21424 0.94901 0.97817 1.01570 1.21889 0.98058 0.95392 1.01144 1.21652 0.91115 0.84802 1.04029 1.43340 1.55165 1.12106 1.04184 1.19418 1.39926 0.97602 0.89251 0.89554 1.25465 0.94759 0.95704 1.00056 1.69649 1.33618 1.13304 1.34021 0.86067 0.77955 0.79523 0.81957 1.20220 1.20761 1.19351 1.19445 0.81161 0.86667 0.84081 1.90522 1.57600 1.68715 1.32111 1.22234 0.97796 0.97102 0.95611 0.86420 1.23953 0.89297 1.00291 1.04958 0.86259 1.22920 0.98667 0.85471 0.93069 1.89111 1.20929 1.55127 1.64733 1.22899 0.82126 0.93231 1.01901 1.24107 1.03258 0.93929 0.98662 0.85588 0.93055 0.93452 0.93136 0.92193 0.92504 0.93196 0.92359 0.86394 0.93269 0.91851 0.88730 0.91675 0.88836 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.12 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.60 5.54 -26.73 -0.15 -2.75 16 4 C 0.11 2.56 4.96 -4.04 -0.02 2.54 16 5 N -0.43 -10.78 2.52 -114.81 -0.29 -11.06 16 6 C -0.33 -8.24 8.49 -14.93 -0.13 -8.36 16 7 H 0.09 2.04 6.75 -52.49 -0.35 1.68 16 8 C 0.05 1.11 5.23 -17.47 -0.09 1.02 16 9 N -0.87 -22.32 10.95 55.50 0.61 -21.71 16 10 Si 0.92 18.96 29.56 -169.99 -5.03 13.93 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 14 C 0.50 12.17 7.40 -10.99 -0.08 12.09 16 15 O -0.60 -15.99 15.99 5.55 0.09 -15.90 16 16 C -0.11 -2.17 4.99 -91.78 -0.46 -2.62 16 17 H 0.12 2.32 6.67 -51.92 -0.35 1.97 16 18 C -0.17 -3.03 6.91 -89.12 -0.62 -3.64 16 19 H 0.12 2.27 8.14 -51.93 -0.42 1.85 16 20 C 0.08 1.16 7.44 37.96 0.28 1.45 16 21 O -0.38 -6.13 11.65 -35.23 -0.41 -6.54 16 22 C 0.07 1.11 7.44 37.93 0.28 1.39 16 23 C -0.18 -3.20 6.63 -89.15 -0.59 -3.79 16 24 H 0.13 2.33 7.85 -51.93 -0.41 1.92 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.12 2.99 5.28 -51.93 -0.27 2.71 16 33 H 0.05 1.23 7.48 -51.93 -0.39 0.84 16 34 H 0.27 6.59 8.32 -40.82 -0.34 6.25 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -28.20 312.93 -7.65 -35.85 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.98 Total: 7.35 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.36 Total: -6.64 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.32 Total: -32.77 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.32 Total: -22.44 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.20 -7.65 -35.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142641766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.409 kcal (2) G-P(sol) polarization free energy of solvation -28.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds