Wall clock time and date at job start Mon Mar 30 2020 00:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47227 * 2 1 4 4 C 1.52997 * 109.47308 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46998 * 180.02562 * 4 3 2 6 6 C 1.37096 * 120.00082 * 93.67601 * 5 4 3 7 7 H 1.08000 * 119.99865 * 217.33717 * 6 5 4 8 8 C 1.38951 * 120.00193 * 37.61764 * 6 5 4 9 9 N 1.31410 * 119.99967 * 17.99366 * 8 6 5 10 10 Si 1.86795 * 120.00065 * 198.00036 * 8 6 5 11 11 H 1.48501 * 109.47264 * 59.99642 * 10 8 6 12 12 H 1.48503 * 109.47388 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47409 * 299.99435 * 10 8 6 14 14 C 1.34774 * 119.99963 * 273.66856 * 5 4 3 15 15 O 1.21299 * 119.99990 * 0.02562 * 14 5 4 16 16 C 1.50707 * 120.00038 * 180.02562 * 14 5 4 17 17 H 1.08996 * 110.73672 * 56.57066 * 16 14 5 18 18 C 1.54987 * 110.83012 * 180.02562 * 16 14 5 19 19 C 1.54276 * 103.74663 * 155.29528 * 18 16 14 20 20 C 1.51449 * 106.85481 * 336.87295 * 19 18 16 21 21 O 1.20758 * 126.34338 * 179.66326 * 20 19 18 22 22 C 1.51848 * 107.31448 * 359.64450 * 20 19 18 23 23 H 1.08996 * 109.47149 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46941 * 299.99670 * 1 2 3 25 25 H 1.09004 * 109.47021 * 59.99856 * 1 2 3 26 26 H 1.09004 * 109.46847 * 240.00643 * 2 1 3 27 27 H 1.08996 * 109.47228 * 120.00383 * 2 1 3 28 28 H 1.09012 * 109.47010 * 60.00006 * 3 2 1 29 29 H 1.09000 * 109.47169 * 300.00776 * 3 2 1 30 30 H 1.08996 * 109.46927 * 60.00289 * 4 3 2 31 31 H 1.08996 * 109.47161 * 300.00391 * 4 3 2 32 32 H 0.97002 * 120.00189 * 180.02562 * 9 8 6 33 33 H 1.08994 * 110.56875 * 273.86052 * 18 16 14 34 34 H 1.08997 * 110.57189 * 36.58175 * 18 16 14 35 35 H 1.09001 * 109.98540 * 96.22726 * 19 18 16 36 36 H 1.09001 * 109.98752 * 217.52494 * 19 18 16 37 37 H 1.08995 * 110.44216 * 265.05440 * 22 20 19 38 38 H 1.08998 * 110.44023 * 142.52682 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3591 3.4439 1.1850 7 1 4.1358 4.4922 1.3177 8 6 4.9564 2.7253 2.2134 9 7 5.5508 1.5817 1.9567 10 14 4.9144 3.3846 3.9606 11 1 3.5037 3.5338 4.3996 12 1 5.6160 2.4375 4.8641 13 1 5.5898 4.7062 4.0074 14 6 4.2120 3.4846 -1.1645 15 8 3.9456 2.9360 -2.2130 16 6 4.7149 4.9053 -1.1639 17 1 5.6782 4.9736 -0.6585 18 6 4.8099 5.4569 -2.6092 19 6 4.6974 6.9847 -2.4266 20 6 3.9917 7.2185 -1.1072 21 8 3.7265 8.2900 -0.6175 22 6 3.6788 5.8560 -0.5143 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6766 1.9564 -0.8899 30 1 3.9330 0.9289 -0.8909 31 1 3.9338 0.9285 0.8890 32 1 5.9675 1.0798 2.6746 33 1 5.7682 5.1943 -3.0571 34 1 3.9878 5.0802 -3.2177 35 1 5.6915 7.4311 -2.4016 36 1 4.1158 7.4156 -3.2416 37 1 2.6657 5.5507 -0.7756 38 1 3.8049 5.8739 0.5682 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181881330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:35 Heat of formation + Delta-G solvation = -93.246910 kcal Electronic energy + Delta-G solvation = -19408.018713 eV Core-core repulsion = 16442.809163 eV Total energy + Delta-G solvation = -2965.209550 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.70925 -38.40558 -35.83524 -34.85150 -33.96790 -31.54368 -29.43605 -27.98205 -26.63413 -24.94642 -23.14802 -21.02009 -20.31277 -19.13088 -18.94462 -17.13019 -16.37300 -15.43746 -15.05308 -14.81884 -14.60884 -14.36412 -14.02641 -13.78614 -13.34538 -13.07027 -12.71227 -12.38961 -12.21604 -11.98275 -11.56901 -11.31314 -11.21404 -11.14248 -11.02629 -10.65844 -10.59505 -10.47430 -10.38354 -10.27294 -10.10533 -9.74284 -9.24963 -9.10156 -8.41928 -7.52696 -6.41387 -4.14465 2.16882 3.08809 3.17472 3.19581 3.81533 4.05260 4.38550 4.75146 4.82349 4.93184 5.27136 5.34993 5.47578 5.49914 5.65011 5.69298 5.70667 5.88655 5.90545 6.06542 6.19870 6.23615 6.23886 6.30798 6.38385 6.45248 6.51523 6.61362 6.70542 6.75269 6.82910 7.11904 7.34717 7.48881 7.72664 7.91260 8.32969 9.02355 9.47344 9.90534 10.59206 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.008555 C = 0.006387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.662169 B = 3272.202917 C = 4382.932093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.114 3.886 5 N -0.434 5.434 6 C -0.346 4.346 7 H 0.095 0.905 8 C 0.045 3.955 9 N -0.859 5.859 10 Si 0.911 3.089 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.476 3.524 15 O -0.604 6.604 16 C -0.087 4.087 17 H 0.102 0.898 18 C -0.102 4.102 19 C -0.184 4.184 20 C 0.372 3.628 21 O -0.460 6.460 22 C -0.170 4.170 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.270 0.730 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 2.453 -2.738 4.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.010 4.010 5 N -0.150 5.150 6 C -0.474 4.474 7 H 0.113 0.887 8 C -0.161 4.161 9 N -0.495 5.495 10 Si 0.737 3.263 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.196 1.196 14 C 0.265 3.735 15 O -0.490 6.490 16 C -0.109 4.109 17 H 0.120 0.880 18 C -0.140 4.140 19 C -0.221 4.221 20 C 0.248 3.752 21 O -0.334 6.334 22 C -0.208 4.208 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.124 0.876 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.341 2.560 -2.856 5.086 hybrid contribution 0.124 0.144 1.045 1.062 sum -3.216 2.703 -1.812 4.576 Atomic orbital electron populations 1.21758 0.96671 1.00667 1.01454 1.21429 0.94940 0.97794 1.01582 1.21905 0.97995 0.95465 1.01249 1.21434 0.90997 0.85024 1.03518 1.43422 1.55047 1.11927 1.04647 1.19626 1.40264 0.96842 0.90651 0.88718 1.25386 0.94097 0.96278 1.00332 1.69885 1.31339 1.14997 1.33278 0.86254 0.78785 0.78941 0.82311 1.19709 1.20848 1.19627 1.20118 0.81352 0.88186 0.83871 1.90521 1.56680 1.70044 1.31799 1.21838 0.99790 0.93203 0.96029 0.88039 1.22171 1.03568 0.91440 0.96777 1.22703 1.02371 0.99220 0.97836 1.25154 0.73387 0.89858 0.86795 1.90372 1.45891 1.31428 1.65725 1.22936 1.01196 0.93434 1.03250 0.93440 0.93053 0.93109 0.92430 0.92268 0.92369 0.92978 0.93058 0.87595 0.91937 0.90833 0.89792 0.88713 0.88796 0.88048 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -1.97 5.93 -26.73 -0.16 -2.13 16 3 C -0.13 -2.52 5.52 -26.73 -0.15 -2.67 16 4 C 0.11 2.62 4.92 -4.04 -0.02 2.60 16 5 N -0.43 -10.32 2.53 -114.81 -0.29 -10.61 16 6 C -0.35 -8.23 8.45 -14.93 -0.13 -8.36 16 7 H 0.10 2.12 4.66 -52.49 -0.24 1.87 16 8 C 0.05 1.09 5.01 -17.47 -0.09 1.01 16 9 N -0.86 -21.82 11.30 55.50 0.63 -21.19 16 10 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 11 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 14 C 0.48 10.87 6.99 -10.98 -0.08 10.79 16 15 O -0.60 -15.05 15.36 5.54 0.09 -14.97 16 16 C -0.09 -1.61 2.49 -89.72 -0.22 -1.83 16 17 H 0.10 1.90 8.04 -51.93 -0.42 1.48 16 18 C -0.10 -1.57 5.97 -25.01 -0.15 -1.72 16 19 C -0.18 -2.41 6.69 -26.85 -0.18 -2.59 16 20 C 0.37 5.89 7.88 -28.10 -0.22 5.67 16 21 O -0.46 -8.45 17.99 6.00 0.11 -8.35 16 22 C -0.17 -2.88 5.44 -26.32 -0.14 -3.03 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 1.24 7.54 -51.93 -0.39 0.85 16 31 H 0.11 2.60 5.43 -51.93 -0.28 2.32 16 32 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.38 7.41 -51.93 -0.38 1.00 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.71 8.04 -51.93 -0.42 1.29 16 38 H 0.11 1.88 5.85 -51.93 -0.30 1.58 16 LS Contribution 309.99 15.07 4.67 4.67 Total: -1.00 -27.94 309.99 -6.80 -34.73 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.80 Total: 5.84 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.16 Total: -3.95 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.34 Total: -31.81 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.19 Total: -23.31 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.94 -6.80 -34.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181881330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.513 kcal (2) G-P(sol) polarization free energy of solvation -27.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds