Wall clock time and date at job start Mon Mar 30 2020 00:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47227 * 2 1 4 4 C 1.52997 * 109.47308 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46998 * 180.02562 * 4 3 2 6 6 C 1.37096 * 120.00082 * 93.67601 * 5 4 3 7 7 H 1.08000 * 119.99865 * 217.33717 * 6 5 4 8 8 C 1.38951 * 120.00193 * 37.61764 * 6 5 4 9 9 N 1.31410 * 119.99967 * 17.99366 * 8 6 5 10 10 Si 1.86795 * 120.00065 * 198.00036 * 8 6 5 11 11 H 1.48501 * 109.47264 * 59.99642 * 10 8 6 12 12 H 1.48503 * 109.47388 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47409 * 299.99435 * 10 8 6 14 14 C 1.34774 * 119.99963 * 273.66856 * 5 4 3 15 15 O 1.21299 * 119.99990 * 0.02562 * 14 5 4 16 16 C 1.50707 * 120.00038 * 180.02562 * 14 5 4 17 17 H 1.08996 * 110.73672 * 56.57066 * 16 14 5 18 18 C 1.54987 * 110.83012 * 180.02562 * 16 14 5 19 19 C 1.54276 * 103.74663 * 155.29528 * 18 16 14 20 20 C 1.51449 * 106.85481 * 336.87295 * 19 18 16 21 21 O 1.20758 * 126.34338 * 179.66326 * 20 19 18 22 22 C 1.51848 * 107.31448 * 359.64450 * 20 19 18 23 23 H 1.08996 * 109.47149 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46941 * 299.99670 * 1 2 3 25 25 H 1.09004 * 109.47021 * 59.99856 * 1 2 3 26 26 H 1.09004 * 109.46847 * 240.00643 * 2 1 3 27 27 H 1.08996 * 109.47228 * 120.00383 * 2 1 3 28 28 H 1.09012 * 109.47010 * 60.00006 * 3 2 1 29 29 H 1.09000 * 109.47169 * 300.00776 * 3 2 1 30 30 H 1.08996 * 109.46927 * 60.00289 * 4 3 2 31 31 H 1.08996 * 109.47161 * 300.00391 * 4 3 2 32 32 H 0.97002 * 120.00189 * 180.02562 * 9 8 6 33 33 H 1.08994 * 110.56875 * 273.86052 * 18 16 14 34 34 H 1.08997 * 110.57189 * 36.58175 * 18 16 14 35 35 H 1.09001 * 109.98540 * 96.22726 * 19 18 16 36 36 H 1.09001 * 109.98752 * 217.52494 * 19 18 16 37 37 H 1.08995 * 110.44216 * 265.05440 * 22 20 19 38 38 H 1.08998 * 110.44023 * 142.52682 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3591 3.4439 1.1850 7 1 4.1358 4.4922 1.3177 8 6 4.9564 2.7253 2.2134 9 7 5.5508 1.5817 1.9567 10 14 4.9144 3.3846 3.9606 11 1 3.5037 3.5338 4.3996 12 1 5.6160 2.4375 4.8641 13 1 5.5898 4.7062 4.0074 14 6 4.2120 3.4846 -1.1645 15 8 3.9456 2.9360 -2.2130 16 6 4.7149 4.9053 -1.1639 17 1 5.6782 4.9736 -0.6585 18 6 4.8099 5.4569 -2.6092 19 6 4.6974 6.9847 -2.4266 20 6 3.9917 7.2185 -1.1072 21 8 3.7265 8.2900 -0.6175 22 6 3.6788 5.8560 -0.5143 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6766 1.9564 -0.8899 30 1 3.9330 0.9289 -0.8909 31 1 3.9338 0.9285 0.8890 32 1 5.9675 1.0798 2.6746 33 1 5.7682 5.1943 -3.0571 34 1 3.9878 5.0802 -3.2177 35 1 5.6915 7.4311 -2.4016 36 1 4.1158 7.4156 -3.2416 37 1 2.6657 5.5507 -0.7756 38 1 3.8049 5.8739 0.5682 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181881330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:34 Heat of formation + Delta-G solvation = -107.897097 kcal Electronic energy + Delta-G solvation = -19408.653993 eV Core-core repulsion = 16442.809163 eV Total energy + Delta-G solvation = -2965.844830 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.21178 -40.00908 -37.41654 -36.47037 -35.51897 -33.38838 -30.83714 -29.41254 -28.05089 -26.75765 -24.65204 -22.45115 -21.87173 -20.73064 -20.40820 -18.79690 -17.97322 -16.97087 -16.58827 -16.49502 -16.12429 -15.85710 -15.60769 -15.31003 -14.67598 -14.43909 -14.31737 -13.87369 -13.74995 -13.52016 -13.11084 -12.91352 -12.70553 -12.64083 -12.40802 -12.16974 -12.11738 -11.95941 -11.92211 -11.66325 -11.59957 -11.41226 -10.94675 -10.62690 -10.18127 -9.40834 -8.26634 -6.04856 0.89989 1.43206 1.49285 1.55943 2.03719 2.32144 2.90361 3.09074 3.32283 3.53149 3.90703 4.05557 4.10701 4.26497 4.32333 4.33614 4.39732 4.50325 4.53690 4.67445 4.84774 4.86571 4.90169 4.94767 4.98236 5.01489 5.10927 5.19916 5.23717 5.38100 5.39048 5.45125 5.53201 5.64113 6.07712 6.45981 6.46882 7.15585 7.63582 8.06769 8.74813 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.008555 C = 0.006387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.662169 B = 3272.202917 C = 4382.932093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.114 4.114 4 C 0.114 3.886 5 N -0.447 5.447 6 C -0.355 4.355 7 H 0.108 0.892 8 C 0.005 3.995 9 N -0.892 5.892 10 Si 0.972 3.028 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.264 1.264 14 C 0.465 3.535 15 O -0.631 6.631 16 C -0.087 4.087 17 H 0.099 0.901 18 C -0.095 4.095 19 C -0.167 4.167 20 C 0.381 3.619 21 O -0.484 6.484 22 C -0.167 4.167 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.029 0.971 31 H 0.091 0.909 32 H 0.271 0.729 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.598 3.665 -2.676 5.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.153 4.153 4 C -0.009 4.009 5 N -0.164 5.164 6 C -0.482 4.482 7 H 0.125 0.875 8 C -0.198 4.198 9 N -0.529 5.529 10 Si 0.797 3.203 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.189 1.189 14 C 0.255 3.745 15 O -0.519 6.519 16 C -0.108 4.108 17 H 0.117 0.883 18 C -0.132 4.132 19 C -0.204 4.204 20 C 0.260 3.740 21 O -0.360 6.360 22 C -0.205 4.205 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.753 3.777 -2.799 6.015 hybrid contribution 0.270 -0.295 0.983 1.062 sum -3.483 3.482 -1.816 5.249 Atomic orbital electron populations 1.21710 0.94187 1.02315 1.01757 1.21413 0.97080 0.95312 1.01643 1.21762 0.95543 0.97661 1.00304 1.21380 0.93104 0.84935 1.01530 1.43695 1.55295 1.12124 1.05268 1.19995 1.40012 0.97531 0.90700 0.87486 1.26144 0.93642 0.96425 1.03590 1.69995 1.32409 1.16278 1.34247 0.85297 0.78760 0.78413 0.77872 1.19309 1.21072 1.18856 1.20875 0.80680 0.89835 0.83138 1.90489 1.57741 1.71160 1.32551 1.21815 0.99640 0.90740 0.98633 0.88281 1.22132 1.03765 0.92989 0.94361 1.22621 1.03764 0.97325 0.96650 1.25184 0.72775 0.88571 0.87515 1.90378 1.47139 1.31870 1.66644 1.22865 1.00681 0.94260 1.02711 0.91140 0.92655 0.92919 0.92465 0.92160 0.92825 0.94109 0.95255 0.89115 0.91971 0.89748 0.90902 0.86158 0.86098 0.88246 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.01 16 2 C -0.12 -3.81 5.93 30.60 0.18 -3.62 16 3 C -0.11 -4.59 5.52 30.59 0.17 -4.42 16 4 C 0.11 5.44 4.92 86.38 0.42 5.87 16 5 N -0.45 -21.74 2.53 -635.54 -1.61 -23.34 16 6 C -0.36 -16.97 8.45 84.04 0.71 -16.26 16 7 H 0.11 4.76 4.66 -2.91 -0.01 4.74 16 8 C 0.01 0.25 5.01 84.93 0.43 0.67 16 9 N -0.89 -46.09 11.30 21.66 0.24 -45.85 16 10 Si 0.97 38.36 29.59 68.60 2.03 40.39 16 11 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 12 H -0.29 -11.27 7.11 99.48 0.71 -10.57 16 13 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 14 C 0.46 21.51 6.99 87.66 0.61 22.12 16 15 O -0.63 -32.06 15.36 -3.09 -0.05 -32.11 16 16 C -0.09 -3.16 2.49 -10.21 -0.03 -3.18 16 17 H 0.10 3.64 8.04 -2.39 -0.02 3.62 16 18 C -0.09 -2.73 5.97 31.71 0.19 -2.54 16 19 C -0.17 -3.80 6.69 30.52 0.20 -3.60 16 20 C 0.38 11.25 7.88 29.71 0.23 11.49 16 21 O -0.48 -16.84 17.99 -1.44 -0.03 -16.86 16 22 C -0.17 -5.51 5.44 30.86 0.17 -5.34 16 23 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.03 1.48 7.54 -2.39 -0.02 1.46 16 31 H 0.09 4.61 5.43 -2.39 -0.01 4.60 16 32 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.07 2.30 7.41 -2.39 -0.02 2.28 16 35 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.10 3.31 8.04 -2.39 -0.02 3.29 16 38 H 0.10 3.38 5.85 -2.39 -0.01 3.37 16 Total: -1.00 -60.37 309.99 5.64 -54.72 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 1.04 Total: 24.88 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 4.01 Total: -1.83 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -1.36 Total: -69.19 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.07 Total: -48.97 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -60.37 5.64 -54.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181881330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.173 kcal (2) G-P(sol) polarization free energy of solvation -60.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds