Wall clock time and date at job start Sun Mar 29 2020 23:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86803 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47344 * 270.00387 * 3 2 1 5 5 H 1.48505 * 109.46741 * 30.00228 * 3 2 1 6 6 H 1.48495 * 109.47418 * 149.99969 * 3 2 1 7 7 C 1.40047 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00226 * 174.39953 * 7 2 1 9 9 C 1.46379 * 119.99607 * 354.40454 * 7 2 1 10 10 O 1.21684 * 120.00078 * 8.70943 * 9 7 2 11 11 N 1.34782 * 119.99406 * 188.71329 * 9 7 2 12 12 C 1.46952 * 120.65703 * 5.81827 * 11 9 7 13 13 C 1.53197 * 108.89002 * 126.46603 * 12 11 9 14 14 C 1.53035 * 109.31229 * 54.55512 * 13 12 11 15 15 C 1.53047 * 109.53765 * 298.63665 * 14 13 12 16 16 C 1.46924 * 120.62436 * 185.63631 * 11 9 7 17 17 H 1.09005 * 109.58862 * 113.68288 * 16 11 9 18 18 C 1.53000 * 109.58932 * 353.39422 * 16 11 9 19 19 H 1.08998 * 109.87029 * 308.22477 * 18 16 11 20 20 C 1.54104 * 109.88053 * 187.21728 * 18 16 11 21 21 C 1.54802 * 104.30755 * 238.48172 * 20 18 16 22 22 C 1.55228 * 101.98871 * 339.26311 * 21 20 18 23 23 O 1.43748 * 109.87641 * 69.38923 * 18 16 11 24 24 H 0.96997 * 119.99692 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.59633 * 6.60513 * 12 11 9 26 26 H 1.08997 * 109.58722 * 246.31621 * 12 11 9 27 27 H 1.08999 * 109.49266 * 294.60448 * 13 12 11 28 28 H 1.08995 * 109.52653 * 174.52541 * 13 12 11 29 29 H 1.08999 * 109.46231 * 178.61819 * 14 13 12 30 30 H 1.08999 * 109.45078 * 58.65178 * 14 13 12 31 31 H 1.08996 * 109.50144 * 301.41381 * 15 14 13 32 32 H 1.08998 * 109.52193 * 181.32894 * 15 14 13 33 33 H 1.09004 * 110.48593 * 357.22849 * 20 18 16 34 34 H 1.09000 * 110.48547 * 119.73717 * 20 18 16 35 35 H 1.09006 * 110.90880 * 97.38591 * 21 20 18 36 36 H 1.08998 * 110.91149 * 220.98520 * 21 20 18 37 37 H 1.09006 * 110.51634 * 278.38555 * 22 21 20 38 38 H 1.09000 * 110.77869 * 155.50063 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0071 -1.2128 -0.0005 8 1 3.0831 -1.2150 -0.0918 9 6 1.2804 -2.4775 0.1225 10 8 0.0649 -2.4888 0.0658 11 7 1.9577 -3.6294 0.2986 12 6 3.4138 -3.6197 0.4964 13 6 3.7455 -4.3919 1.7773 14 6 3.1312 -5.7913 1.6981 15 6 1.6094 -5.6764 1.5837 16 6 1.2535 -4.9189 0.3006 17 1 1.5604 -5.5042 -0.5663 18 6 -0.2566 -4.6788 0.2488 19 1 -0.5476 -3.9794 1.0326 20 6 -1.0060 -6.0128 0.4324 21 6 -1.8628 -6.1498 -0.8496 22 6 -1.9327 -4.6818 -1.3492 23 8 -0.6245 -4.1557 -1.0386 24 1 -0.4849 0.8400 0.0004 25 1 3.7634 -2.5914 0.5887 26 1 3.9012 -4.0964 -0.3541 27 1 3.3355 -3.8627 2.6375 28 1 4.8272 -4.4748 1.8829 29 1 3.3865 -6.3513 2.5977 30 1 3.5230 -6.3107 0.8236 31 1 1.2195 -5.1352 2.4457 32 1 1.1703 -6.6735 1.5511 33 1 -0.2998 -6.8395 0.5095 34 1 -1.6440 -5.9736 1.3153 35 1 -1.3672 -6.7866 -1.5825 36 1 -2.8566 -6.5306 -0.6145 37 1 -2.7052 -4.1317 -0.8116 38 1 -2.1153 -4.6471 -2.4232 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349815647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:04 Heat of formation + Delta-G solvation = -68.510735 kcal Electronic energy + Delta-G solvation = -20361.550869 eV Core-core repulsion = 17397.413960 eV Total energy + Delta-G solvation = -2964.136909 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.46405 -37.46598 -35.64717 -32.54452 -31.94822 -31.32612 -30.84965 -27.36361 -26.25681 -23.88672 -22.93257 -21.50638 -20.25872 -20.02388 -18.79852 -16.45855 -15.74864 -15.47648 -14.99297 -14.68677 -14.14487 -14.05372 -13.68291 -13.50193 -12.92518 -12.80451 -12.64499 -12.35263 -11.61892 -11.53087 -11.11790 -11.07921 -10.96978 -10.88738 -10.81395 -10.50341 -10.40046 -10.24606 -10.16206 -10.07159 -9.91748 -9.64881 -8.77461 -8.45340 -7.06280 -6.95511 -6.03141 -4.50353 3.18574 3.25583 3.28191 4.15551 4.55563 4.64333 4.79788 5.12581 5.23019 5.32296 5.34330 5.37755 5.58670 5.75005 5.80832 5.91030 5.91569 5.98652 6.04459 6.13762 6.16560 6.21893 6.29547 6.34252 6.39185 6.40115 6.52202 6.53248 6.63177 6.67309 6.84221 7.19505 7.54846 7.70762 8.06814 8.27287 8.49096 9.14010 9.59226 10.70799 10.92820 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.009312 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.828993 B = 3006.098220 C = 4197.006094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.090 3.910 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.534 6.534 11 N -0.638 5.638 12 C 0.123 3.877 13 C -0.136 4.136 14 C -0.113 4.113 15 C -0.128 4.128 16 C 0.156 3.844 17 H 0.048 0.952 18 C 0.105 3.895 19 H 0.090 0.910 20 C -0.167 4.167 21 C -0.155 4.155 22 C 0.044 3.956 23 O -0.324 6.324 24 H 0.265 0.735 25 H 0.092 0.908 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -10.421 2.176 10.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.129 4.129 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.415 6.415 11 N -0.377 5.377 12 C -0.002 4.002 13 C -0.174 4.174 14 C -0.151 4.151 15 C -0.167 4.167 16 C 0.051 3.949 17 H 0.066 0.934 18 C 0.047 3.953 19 H 0.108 0.892 20 C -0.205 4.205 21 C -0.193 4.193 22 C -0.034 4.034 23 O -0.241 6.241 24 H 0.076 0.924 25 H 0.110 0.890 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.624 -10.140 2.005 10.463 hybrid contribution 0.449 0.552 0.120 0.721 sum 2.073 -9.588 2.125 10.038 Atomic orbital electron populations 1.70025 1.06867 1.26886 1.35867 1.25657 0.94530 0.99961 0.92782 0.86493 0.80241 0.81986 0.78730 1.19901 1.20615 1.19028 1.20945 0.93801 0.89643 1.53789 0.91396 1.18185 0.87237 0.81944 0.76516 1.90632 1.13351 1.83851 1.53656 1.48210 1.05873 1.05095 1.78530 1.21377 0.83114 1.01259 0.94408 1.21961 0.99434 0.96069 0.99968 1.21451 0.95610 0.97191 1.00827 1.21983 0.96019 0.99656 0.99021 1.20920 0.92021 0.86632 0.95303 0.93403 1.22651 0.92286 0.90480 0.89879 0.89194 1.23324 0.99319 1.00078 0.97819 1.23153 0.99700 0.98677 0.97721 1.23378 0.89106 0.91255 0.99678 1.89277 1.30552 1.69690 1.34629 0.92398 0.89002 0.94410 0.91815 0.92161 0.92727 0.92468 0.91730 0.91882 0.91228 0.91575 0.91502 0.91539 0.93192 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.96 11.86 55.55 0.66 -22.30 16 2 C 0.09 2.52 5.50 -17.37 -0.10 2.42 16 3 Si 0.90 20.38 29.56 -169.99 -5.03 15.35 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.54 -15.41 8.71 -35.63 -0.31 -15.72 16 8 H 0.07 1.78 5.95 -52.49 -0.31 1.47 16 9 C 0.56 15.73 7.35 -12.98 -0.10 15.63 16 10 O -0.53 -16.41 9.26 -20.00 -0.19 -16.59 16 11 N -0.64 -14.76 2.98 -166.84 -0.50 -15.25 16 12 C 0.12 2.36 6.29 -3.69 -0.02 2.34 16 13 C -0.14 -2.12 6.08 -26.61 -0.16 -2.28 16 14 C -0.11 -1.61 5.88 -26.69 -0.16 -1.77 16 15 C -0.13 -2.06 4.89 -26.61 -0.13 -2.19 16 16 C 0.16 3.14 2.69 -67.60 -0.18 2.96 16 17 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 18 C 0.11 2.24 2.12 -26.15 -0.06 2.18 16 19 H 0.09 2.26 6.42 -51.93 -0.33 1.93 16 20 C -0.17 -2.70 6.06 -25.21 -0.15 -2.86 16 21 C -0.15 -2.35 7.17 -24.60 -0.18 -2.53 16 22 C 0.04 0.83 7.72 38.34 0.30 1.12 16 23 O -0.32 -7.86 8.45 -60.43 -0.51 -8.37 16 24 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 25 H 0.09 1.86 5.50 -51.93 -0.29 1.58 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.86 6.37 -51.93 -0.33 0.53 16 33 H 0.07 0.99 6.05 -51.93 -0.31 0.68 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 290.18 15.07 4.37 4.37 Total: -1.00 -33.04 290.18 -8.21 -41.25 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.78 Total: 2.22 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.24 Total: -0.68 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.16 Total: -37.55 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.70 Total: -24.96 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.04 -8.21 -41.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349815647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.259 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds