Wall clock time and date at job start Sun Mar 29 2020 23:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86803 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47344 * 270.00387 * 3 2 1 5 5 H 1.48505 * 109.46741 * 30.00228 * 3 2 1 6 6 H 1.48495 * 109.47418 * 149.99969 * 3 2 1 7 7 C 1.40047 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00226 * 174.39953 * 7 2 1 9 9 C 1.46379 * 119.99607 * 354.40454 * 7 2 1 10 10 O 1.21684 * 120.00078 * 8.70943 * 9 7 2 11 11 N 1.34782 * 119.99406 * 188.71329 * 9 7 2 12 12 C 1.46952 * 120.65703 * 5.81827 * 11 9 7 13 13 C 1.53197 * 108.89002 * 126.46603 * 12 11 9 14 14 C 1.53035 * 109.31229 * 54.55512 * 13 12 11 15 15 C 1.53047 * 109.53765 * 298.63665 * 14 13 12 16 16 C 1.46924 * 120.62436 * 185.63631 * 11 9 7 17 17 H 1.09005 * 109.58862 * 113.68288 * 16 11 9 18 18 C 1.53000 * 109.58932 * 353.39422 * 16 11 9 19 19 H 1.08998 * 109.87029 * 308.22477 * 18 16 11 20 20 C 1.54104 * 109.88053 * 187.21728 * 18 16 11 21 21 C 1.54802 * 104.30755 * 238.48172 * 20 18 16 22 22 C 1.55228 * 101.98871 * 339.26311 * 21 20 18 23 23 O 1.43748 * 109.87641 * 69.38923 * 18 16 11 24 24 H 0.96997 * 119.99692 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.59633 * 6.60513 * 12 11 9 26 26 H 1.08997 * 109.58722 * 246.31621 * 12 11 9 27 27 H 1.08999 * 109.49266 * 294.60448 * 13 12 11 28 28 H 1.08995 * 109.52653 * 174.52541 * 13 12 11 29 29 H 1.08999 * 109.46231 * 178.61819 * 14 13 12 30 30 H 1.08999 * 109.45078 * 58.65178 * 14 13 12 31 31 H 1.08996 * 109.50144 * 301.41381 * 15 14 13 32 32 H 1.08998 * 109.52193 * 181.32894 * 15 14 13 33 33 H 1.09004 * 110.48593 * 357.22849 * 20 18 16 34 34 H 1.09000 * 110.48547 * 119.73717 * 20 18 16 35 35 H 1.09006 * 110.90880 * 97.38591 * 21 20 18 36 36 H 1.08998 * 110.91149 * 220.98520 * 21 20 18 37 37 H 1.09006 * 110.51634 * 278.38555 * 22 21 20 38 38 H 1.09000 * 110.77869 * 155.50063 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0071 -1.2128 -0.0005 8 1 3.0831 -1.2150 -0.0918 9 6 1.2804 -2.4775 0.1225 10 8 0.0649 -2.4888 0.0658 11 7 1.9577 -3.6294 0.2986 12 6 3.4138 -3.6197 0.4964 13 6 3.7455 -4.3919 1.7773 14 6 3.1312 -5.7913 1.6981 15 6 1.6094 -5.6764 1.5837 16 6 1.2535 -4.9189 0.3006 17 1 1.5604 -5.5042 -0.5663 18 6 -0.2566 -4.6788 0.2488 19 1 -0.5476 -3.9794 1.0326 20 6 -1.0060 -6.0128 0.4324 21 6 -1.8628 -6.1498 -0.8496 22 6 -1.9327 -4.6818 -1.3492 23 8 -0.6245 -4.1557 -1.0386 24 1 -0.4849 0.8400 0.0004 25 1 3.7634 -2.5914 0.5887 26 1 3.9012 -4.0964 -0.3541 27 1 3.3355 -3.8627 2.6375 28 1 4.8272 -4.4748 1.8829 29 1 3.3865 -6.3513 2.5977 30 1 3.5230 -6.3107 0.8236 31 1 1.2195 -5.1352 2.4457 32 1 1.1703 -6.6735 1.5511 33 1 -0.2998 -6.8395 0.5095 34 1 -1.6440 -5.9736 1.3153 35 1 -1.3672 -6.7866 -1.5825 36 1 -2.8566 -6.5306 -0.6145 37 1 -2.7052 -4.1317 -0.8116 38 1 -2.1153 -4.6471 -2.4232 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349815647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:03 Heat of formation + Delta-G solvation = -90.146663 kcal Electronic energy + Delta-G solvation = -20362.489073 eV Core-core repulsion = 17397.413960 eV Total energy + Delta-G solvation = -2965.075113 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09790 -39.09718 -37.46646 -34.62268 -33.55141 -32.93836 -32.32003 -28.84315 -28.31034 -25.47416 -24.40497 -23.04995 -21.80524 -21.52423 -20.49732 -18.33009 -17.61447 -17.07039 -16.60797 -16.38614 -15.77105 -15.70360 -15.09044 -15.02103 -14.33380 -14.32619 -14.22832 -14.08669 -13.42065 -13.15769 -12.90009 -12.73299 -12.51463 -12.32951 -12.26819 -12.21808 -11.96919 -11.82762 -11.66509 -11.45071 -11.29286 -11.19690 -10.85714 -10.17627 -9.13478 -8.79759 -8.12730 -6.70501 1.38062 1.39850 1.53532 2.26216 2.58476 2.91702 3.27485 3.73138 3.79564 3.85292 4.03962 4.10865 4.14237 4.25687 4.33840 4.41136 4.49773 4.55228 4.66317 4.84716 4.87887 4.89506 4.94790 4.96037 5.08964 5.09819 5.16874 5.20467 5.25237 5.31541 5.44220 5.45343 5.60828 5.87618 6.23303 6.46379 6.62299 6.98216 7.60078 8.62972 8.84803 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.009312 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.828993 B = 3006.098220 C = 4197.006094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.032 3.968 3 Si 0.986 3.014 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.537 3.463 10 O -0.571 6.571 11 N -0.645 5.645 12 C 0.115 3.885 13 C -0.128 4.128 14 C -0.108 4.108 15 C -0.120 4.120 16 C 0.150 3.850 17 H 0.052 0.948 18 C 0.102 3.898 19 H 0.034 0.966 20 C -0.155 4.155 21 C -0.137 4.137 22 C 0.029 3.971 23 O -0.373 6.373 24 H 0.269 0.731 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.032 0.968 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -12.559 2.639 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.173 1.173 7 C -0.612 4.612 8 H 0.099 0.901 9 C 0.340 3.660 10 O -0.454 6.454 11 N -0.383 5.383 12 C -0.008 4.008 13 C -0.167 4.167 14 C -0.146 4.146 15 C -0.159 4.159 16 C 0.046 3.954 17 H 0.070 0.930 18 C 0.045 3.955 19 H 0.052 0.948 20 C -0.193 4.193 21 C -0.175 4.175 22 C -0.048 4.048 23 O -0.292 6.292 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.050 0.950 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.447 -12.328 2.480 13.039 hybrid contribution -0.134 1.171 -0.063 1.180 sum 3.313 -11.157 2.417 11.887 Atomic orbital electron populations 1.70207 1.09183 1.28205 1.37551 1.26820 0.95415 1.04385 0.91594 0.85194 0.78998 0.76036 0.79132 1.19091 1.19950 1.17310 1.21462 0.94696 0.90681 1.54312 0.90097 1.18512 0.87205 0.83682 0.76580 1.90622 1.14813 1.85239 1.54773 1.48099 1.07538 1.05123 1.77531 1.21578 0.80876 1.01229 0.97155 1.21903 1.01619 0.96358 0.96800 1.21469 0.93610 0.96410 1.03084 1.21954 0.97991 1.00230 0.95675 1.21197 0.90966 0.85570 0.97670 0.92991 1.22525 0.93883 0.91878 0.87254 0.94818 1.23230 0.99636 0.97634 0.98834 1.23094 1.01436 0.95765 0.97194 1.23599 0.86884 0.93917 1.00364 1.89205 1.32644 1.71536 1.35780 0.92164 0.90897 0.92895 0.93571 0.88768 0.89523 0.90959 0.93585 0.88532 0.88247 0.90616 0.89694 0.88472 0.95014 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.74 11.86 21.84 0.26 -51.48 16 2 C 0.03 1.86 5.50 85.30 0.47 2.33 16 3 Si 0.99 42.86 29.56 68.60 2.03 44.89 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.57 -33.81 8.71 24.83 0.22 -33.59 16 8 H 0.08 4.36 5.95 -2.91 -0.02 4.34 16 9 C 0.54 31.96 7.35 86.36 0.63 32.59 16 10 O -0.57 -37.54 9.26 19.80 0.18 -37.36 16 11 N -0.64 -30.58 2.98 -799.98 -2.38 -32.96 16 12 C 0.11 4.37 6.29 86.36 0.54 4.91 16 13 C -0.13 -3.72 6.08 30.67 0.19 -3.53 16 14 C -0.11 -2.66 5.88 30.62 0.18 -2.48 16 15 C -0.12 -3.58 4.89 30.68 0.15 -3.43 16 16 C 0.15 6.00 2.69 44.98 0.12 6.12 16 17 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 18 C 0.10 4.50 2.12 30.97 0.07 4.57 16 19 H 0.03 1.83 6.42 -2.39 -0.02 1.82 16 20 C -0.16 -4.75 6.06 31.58 0.19 -4.55 16 21 C -0.14 -3.87 7.17 31.97 0.23 -3.64 16 22 C 0.03 1.15 7.72 72.75 0.56 1.71 16 23 O -0.37 -18.97 8.45 -124.88 -1.06 -20.02 16 24 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 25 H 0.07 3.00 5.50 -2.39 -0.01 2.98 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 2.23 6.37 -2.39 -0.02 2.22 16 33 H 0.10 2.44 6.05 -2.39 -0.01 2.43 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 35 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -78.84 290.18 3.62 -75.21 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 1.04 Total: 20.73 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 3.55 Total: 0.99 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.12 Total: -84.44 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -0.87 Total: -57.38 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -78.84 3.62 -75.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349815647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.933 kcal (2) G-P(sol) polarization free energy of solvation -78.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds