Wall clock time and date at job start Sun Mar 29 2020 22:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99767 * 2 1 4 4 H 1.48506 * 109.47230 * 239.99819 * 3 2 1 5 5 H 1.48497 * 109.47499 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46847 * 120.00472 * 3 2 1 7 7 C 1.37873 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00313 * 173.36687 * 7 2 1 9 9 C 1.50701 * 119.99940 * 353.37361 * 7 2 1 10 10 C 1.52993 * 115.55305 * 84.88501 * 9 7 2 11 11 N 1.46896 * 109.47269 * 39.53070 * 10 9 7 12 12 C 1.46903 * 111.00434 * 185.40704 * 11 10 9 13 13 H 1.08996 * 110.43100 * 323.91521 * 12 11 10 14 14 C 1.54267 * 110.48548 * 86.45338 * 12 11 10 15 15 C 1.53874 * 106.59800 * 142.42280 * 14 12 11 16 16 C 1.54270 * 106.59745 * 0.02562 * 15 14 12 17 17 H 1.09003 * 110.48460 * 95.20113 * 16 15 14 18 18 C 1.50697 * 110.48658 * 217.70911 * 16 15 14 19 19 O 1.20832 * 120.00014 * 116.75681 * 18 16 15 20 20 O 1.34225 * 120.00177 * 297.03644 * 18 16 15 21 21 C 1.54889 * 104.31234 * 336.45532 * 16 15 14 22 22 C 1.53004 * 117.51547 * 230.58964 * 9 7 2 23 23 C 1.52999 * 60.00106 * 107.47737 * 22 9 7 24 24 H 0.96999 * 119.99556 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47151 * 279.53137 * 10 9 7 26 26 H 1.09004 * 109.47210 * 159.52969 * 10 9 7 27 27 H 1.00906 * 110.99919 * 61.45200 * 11 10 9 28 28 H 1.09000 * 110.03041 * 23.13762 * 14 12 11 29 29 H 1.08998 * 110.03207 * 261.70666 * 14 12 11 30 30 H 1.08996 * 110.03339 * 240.71960 * 15 14 12 31 31 H 1.08997 * 110.02958 * 119.28632 * 15 14 12 32 32 H 0.96703 * 117.00009 * 179.72194 * 20 18 16 33 33 H 1.09008 * 110.74982 * 156.19188 * 21 16 15 34 34 H 1.08999 * 110.75472 * 279.55984 * 21 16 15 35 35 H 1.09003 * 117.49443 * 214.97220 * 22 9 7 36 36 H 1.09001 * 117.50012 * 359.97438 * 22 9 7 37 37 H 1.08995 * 117.49702 * 252.50921 * 23 22 9 38 38 H 1.09002 * 117.49742 * 107.48893 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0792 -1.1971 -0.1086 9 6 1.2587 -2.4948 0.1495 10 6 0.6884 -3.0814 -1.1433 11 7 1.6515 -2.8880 -2.2355 12 6 1.0861 -3.3235 -3.5195 13 1 0.4542 -4.2005 -3.3791 14 6 0.2839 -2.1789 -4.1722 15 6 0.5452 -2.2666 -5.6861 16 6 1.4967 -3.4619 -5.9005 17 1 0.9308 -4.3604 -6.1470 18 6 2.4942 -3.1537 -6.9871 19 8 3.6735 -3.1040 -6.7283 20 8 2.0724 -2.9288 -8.2414 21 6 2.2138 -3.6297 -4.5379 22 6 1.7571 -3.4771 1.2114 23 6 0.4556 -2.7044 1.4349 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2463 -2.5776 -1.3897 26 1 0.5021 -4.1468 -1.0077 27 1 2.5189 -3.3658 -2.0416 28 1 0.6262 -1.2175 -3.7893 29 1 -0.7795 -2.3051 -3.9690 30 1 1.0144 -1.3478 -6.0378 31 1 -0.3914 -2.4353 -6.2174 32 1 2.7490 -2.7311 -8.9033 33 1 2.5802 -4.6493 -4.4172 34 1 3.0276 -2.9113 -4.4386 35 1 1.6788 -4.5413 0.9888 36 1 2.6251 -3.1827 1.8015 37 1 0.4672 -1.9017 2.1721 38 1 -0.4790 -3.2603 1.3594 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062354.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:16 Heat of formation + Delta-G solvation = -96.615218 kcal Electronic energy + Delta-G solvation = -19008.000699 eV Core-core repulsion = 16042.645088 eV Total energy + Delta-G solvation = -2965.355611 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47106 -39.32487 -38.17704 -37.05198 -34.60993 -33.80415 -30.02236 -29.24387 -27.38525 -25.43042 -23.98205 -22.84823 -21.24823 -20.87785 -20.67615 -18.92628 -17.91770 -17.87245 -16.99563 -16.62061 -16.23219 -16.02791 -15.56175 -14.89876 -14.65694 -14.53057 -14.21877 -13.68098 -13.37343 -12.87785 -12.82958 -12.75338 -12.55538 -12.54591 -12.33755 -12.18561 -12.02055 -11.93736 -11.80688 -11.59183 -11.23265 -11.22054 -10.69617 -10.28587 -9.83147 -8.89872 -7.95977 -5.99004 1.20797 1.44626 1.45652 1.51561 2.12898 2.52261 3.30279 3.36574 3.51970 3.58440 3.74494 4.03951 4.36550 4.41920 4.47941 4.50419 4.56066 4.57845 4.59559 4.73479 4.80261 4.84175 4.96943 5.03521 5.13432 5.18789 5.26096 5.31647 5.32901 5.48064 5.62776 5.68352 5.75187 5.93178 6.46623 6.66982 6.85678 7.01473 7.02257 7.64484 9.13486 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.022289 B = 0.005760 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.898249 B = 4860.083177 C = 5446.165191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.030 3.970 3 Si 0.935 3.065 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.465 4.465 8 H 0.044 0.956 9 C 0.020 3.980 10 C 0.126 3.874 11 N -0.669 5.669 12 C 0.084 3.916 13 H 0.054 0.946 14 C -0.114 4.114 15 C -0.097 4.097 16 C -0.079 4.079 17 H 0.143 0.857 18 C 0.492 3.508 19 O -0.552 6.552 20 O -0.508 6.508 21 C -0.102 4.102 22 C -0.192 4.192 23 C -0.166 4.166 24 H 0.252 0.748 25 H 0.042 0.958 26 H 0.012 0.988 27 H 0.336 0.664 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.426 0.574 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 -8.658 -13.688 16.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.169 4.169 3 Si 0.762 3.238 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.019 3.981 10 C -0.004 4.004 11 N -0.300 5.300 12 C -0.026 4.026 13 H 0.072 0.928 14 C -0.152 4.152 15 C -0.135 4.135 16 C -0.098 4.098 17 H 0.161 0.839 18 C 0.336 3.664 19 O -0.443 6.443 20 O -0.322 6.322 21 C -0.140 4.140 22 C -0.229 4.229 23 C -0.204 4.204 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.154 0.846 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.287 0.713 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.330 -7.933 -13.429 15.601 hybrid contribution 0.864 0.517 0.039 1.008 sum 0.534 -7.415 -13.391 15.316 Atomic orbital electron populations 1.70095 1.06653 1.26171 1.51893 1.25398 0.95308 1.00909 0.95282 0.85999 0.78614 0.80922 0.78247 1.20507 1.21536 1.20247 1.20308 0.92092 0.89863 1.48088 0.93811 1.19071 0.98139 0.93998 0.86907 1.21182 0.94296 0.94069 0.90820 1.60196 1.06206 1.62516 1.01064 1.22379 0.95183 0.95596 0.89403 0.92769 1.22121 0.99586 0.99106 0.94401 1.21995 0.99532 0.96166 0.95802 1.21867 0.94990 1.02678 0.90298 0.83918 1.23575 0.88434 0.71112 0.83274 1.90725 1.20900 1.49335 1.83301 1.84508 1.46293 1.81691 1.19658 1.22521 0.97334 1.02644 0.91507 1.23068 0.97142 0.96460 1.06266 1.22393 0.93533 1.01246 1.03207 0.93860 0.93971 0.97015 0.84599 0.93571 0.91940 0.92301 0.88195 0.71278 0.89609 0.91684 0.89216 0.90806 0.92641 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.43 12.95 21.45 0.28 -52.16 16 2 C 0.03 1.66 5.39 84.65 0.46 2.12 16 3 Si 0.93 45.06 29.54 68.60 2.03 47.08 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.47 -25.31 8.15 25.60 0.21 -25.10 16 8 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 9 C 0.02 0.94 1.74 -52.93 -0.09 0.85 16 10 C 0.13 5.40 5.59 86.30 0.48 5.89 16 11 N -0.67 -26.21 5.58 -485.84 -2.71 -28.92 16 12 C 0.08 2.59 3.15 46.03 0.15 2.73 16 13 H 0.05 1.52 7.92 -2.39 -0.02 1.50 16 14 C -0.11 -3.54 6.40 31.32 0.20 -3.34 16 15 C -0.10 -2.23 6.36 31.32 0.20 -2.03 16 16 C -0.08 -1.67 3.36 -10.46 -0.04 -1.71 16 17 H 0.14 2.12 8.14 -2.39 -0.02 2.11 16 18 C 0.49 11.22 7.49 71.24 0.53 11.75 16 19 O -0.55 -16.77 16.50 21.95 0.36 -16.41 16 20 O -0.51 -8.19 13.42 -51.37 -0.69 -8.88 16 21 C -0.10 -2.70 5.35 31.92 0.17 -2.53 16 22 C -0.19 -8.04 9.88 30.60 0.30 -7.73 16 23 C -0.17 -7.73 9.48 30.60 0.29 -7.44 16 24 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.04 2.03 8.03 -2.39 -0.02 2.01 16 26 H 0.01 0.46 7.94 -2.39 -0.02 0.44 16 27 H 0.34 12.54 8.53 -89.69 -0.77 11.77 16 28 H 0.05 1.82 8.04 -2.39 -0.02 1.81 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.45 7.83 -2.39 -0.02 1.43 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.43 3.35 9.10 -74.06 -0.67 2.67 16 33 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.06 2.11 7.49 -2.39 -0.02 2.09 16 35 H 0.09 3.22 8.08 -2.39 -0.02 3.20 16 36 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.05 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -66.33 317.73 1.75 -64.59 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -0.38 Total: 21.23 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 2.86 Total: -26.55 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.44 Total: -81.07 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.33 Total: -25.28 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -66.33 1.75 -64.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062354.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.029 kcal (2) G-P(sol) polarization free energy of solvation -66.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds