Wall clock time and date at job start Sun Mar 29 2020 23:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00417 * 2 1 4 4 H 1.48493 * 109.47169 * 240.00311 * 3 2 1 5 5 H 1.48502 * 109.46694 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46907 * 119.99933 * 3 2 1 7 7 C 1.37883 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99375 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00316 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50309 * 299.92504 * 9 7 2 11 11 C 1.53122 * 109.50166 * 59.99772 * 9 7 2 12 12 C 1.53120 * 109.15927 * 177.63371 * 11 9 7 13 13 C 1.53037 * 109.28189 * 302.35139 * 12 11 9 14 14 N 1.46843 * 109.52411 * 59.17811 * 13 12 11 15 15 C 1.46893 * 111.00236 * 174.16324 * 14 13 12 16 16 C 1.53005 * 109.47235 * 76.30322 * 15 14 13 17 17 C 1.50690 * 115.55174 * 295.55769 * 16 15 14 18 18 O 1.20823 * 120.00088 * 125.18843 * 17 16 15 19 19 O 1.34236 * 120.00095 * 305.17907 * 17 16 15 20 20 C 1.53005 * 117.49822 * 149.88360 * 16 15 14 21 21 C 1.53002 * 117.49360 * 81.22496 * 16 15 14 22 22 C 1.46847 * 111.19847 * 298.25853 * 14 13 12 23 23 H 0.97001 * 120.00152 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.52047 * 57.73612 * 11 9 7 25 25 H 1.08999 * 109.58018 * 297.57356 * 11 9 7 26 26 H 1.09007 * 109.50157 * 182.40908 * 12 11 9 27 27 H 1.08999 * 109.50368 * 62.29303 * 12 11 9 28 28 H 1.09008 * 109.46002 * 299.16131 * 13 12 11 29 29 H 1.08999 * 109.45119 * 179.18985 * 13 12 11 30 30 H 1.09008 * 109.46849 * 316.31020 * 15 14 13 31 31 H 1.08998 * 109.47872 * 196.30907 * 15 14 13 32 32 H 0.96697 * 117.00059 * 175.04560 * 19 17 16 33 33 H 1.09003 * 117.49395 * 0.02562 * 20 16 15 34 34 H 1.08994 * 117.50145 * 145.02307 * 20 16 15 35 35 H 1.09002 * 117.49736 * 214.97872 * 21 16 15 36 36 H 1.09000 * 117.50212 * 359.97438 * 21 16 15 37 37 H 1.09004 * 109.46487 * 181.75822 * 22 14 13 38 38 H 1.09001 * 109.46545 * 301.72867 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6255 -2.5583 0.8902 11 6 0.3699 -2.5807 -1.2502 12 6 -0.3466 -3.9338 -1.2725 13 6 0.6928 -5.0566 -1.2407 14 7 1.5096 -4.9350 -0.0264 15 6 2.4264 -6.0748 0.1078 16 6 3.5977 -5.9040 -0.8617 17 6 3.2394 -5.9310 -2.3251 18 8 3.5625 -5.0146 -3.0432 19 8 2.5615 -6.9733 -2.8311 20 6 4.9458 -6.5015 -0.4532 21 6 4.7424 -4.9845 -0.4315 22 6 2.2441 -3.6636 -0.0056 23 1 -0.4850 0.8400 -0.0004 24 1 0.9908 -2.4827 -2.1407 25 1 -0.3676 -1.7784 -1.2302 26 1 -0.9424 -4.0151 -2.1817 27 1 -0.9972 -4.0155 -0.4018 28 1 1.3344 -4.9826 -2.1188 29 1 0.1853 -6.0212 -1.2419 30 1 1.8948 -6.9979 -0.1238 31 1 2.8038 -6.1194 1.1293 32 1 2.2902 -6.9127 -3.7572 33 1 4.9979 -7.0167 0.5060 34 1 5.5736 -6.9139 -1.2430 35 1 5.2366 -4.3994 -1.2071 36 1 4.6608 -4.5009 0.5420 37 1 2.8635 -3.6165 0.8901 38 1 2.8783 -3.5960 -0.8895 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:14 Heat of formation + Delta-G solvation = -67.368228 kcal Electronic energy + Delta-G solvation = -20094.721031 eV Core-core repulsion = 17130.633665 eV Total energy + Delta-G solvation = -2964.087366 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.79541 -38.36905 -36.68582 -35.85313 -33.45012 -31.48845 -29.87146 -26.79898 -24.97149 -24.64322 -22.71192 -21.84850 -21.21229 -19.87817 -18.57130 -17.78991 -16.75648 -16.17303 -15.71478 -14.95403 -14.51223 -14.30853 -14.18571 -13.85818 -13.30121 -12.83668 -12.65088 -12.34116 -12.05411 -11.89537 -11.53045 -11.47546 -11.30479 -10.90378 -10.89065 -10.73481 -10.62233 -10.21367 -10.19378 -9.96656 -9.76192 -9.40497 -8.98320 -8.66056 -8.25423 -7.66906 -5.92356 -3.97955 2.22561 3.01390 3.35870 3.40079 3.42972 3.64236 4.43019 4.56883 4.59330 4.75884 4.95880 5.24205 5.37562 5.50890 5.57325 5.66293 5.76552 5.82191 5.93596 6.03095 6.07638 6.11593 6.28971 6.50129 6.51885 6.56370 6.73772 6.81792 7.01589 7.26096 7.42716 7.65309 7.77465 7.82923 7.98488 8.13162 8.22171 8.53766 9.05547 9.65808 11.13761 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.025829 B = 0.007098 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.809820 B = 3943.825048 C = 4351.639588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.032 0.968 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.059 3.941 14 N -0.532 5.532 15 C 0.096 3.904 16 C -0.172 4.172 17 C 0.518 3.482 18 O -0.506 6.506 19 O -0.515 6.515 20 C -0.152 4.152 21 C -0.133 4.133 22 C 0.062 3.938 23 H 0.259 0.741 24 H 0.029 0.971 25 H 0.091 0.909 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.407 0.593 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 -14.131 -1.991 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.050 0.950 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.069 4.069 14 N -0.254 5.254 15 C -0.033 4.033 16 C -0.175 4.175 17 C 0.361 3.639 18 O -0.394 6.394 19 O -0.327 6.327 20 C -0.190 4.190 21 C -0.169 4.169 22 C -0.064 4.064 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.109 0.891 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.265 0.735 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.077 0.923 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.975 -13.768 -1.372 14.703 hybrid contribution 0.806 0.964 -1.520 1.972 sum 5.781 -12.804 -2.892 14.343 Atomic orbital electron populations 1.69881 1.05827 1.26341 1.50804 1.24927 0.94818 0.98894 0.95205 0.86704 0.79640 0.83370 0.78548 1.20383 1.21347 1.20314 1.21103 0.92782 0.90652 1.50515 0.92899 1.18665 0.92630 0.90472 0.94642 0.94957 1.21653 1.00020 0.94572 0.98640 1.21681 0.97116 0.96544 1.00171 1.22170 0.95562 0.98910 0.90247 1.62266 1.22937 1.02669 1.37507 1.21882 0.89289 0.95562 0.96553 1.21825 0.94691 1.10719 0.90279 1.22089 0.73643 0.78550 0.89623 1.90755 1.51546 1.36342 1.60710 1.84515 1.68993 1.45009 1.34183 1.23122 0.95109 0.97418 1.03307 1.23244 0.97128 0.92450 1.04122 1.22476 0.96652 0.87992 0.99330 0.93069 0.95220 0.89111 0.93653 0.91968 0.96214 0.92215 0.90195 0.89596 0.73488 0.87279 0.88641 0.87566 0.86673 0.92345 0.94672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 11.35 55.43 0.63 -25.19 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.30 8.57 -34.44 -0.30 -14.60 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.05 1.40 2.26 -91.69 -0.21 1.19 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 11 C -0.11 -2.74 5.02 -26.61 -0.13 -2.87 16 12 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 13 C 0.06 1.08 4.83 -3.84 -0.02 1.06 16 14 N -0.53 -9.80 4.86 -234.67 -1.14 -10.94 16 15 C 0.10 1.39 5.53 -3.83 -0.02 1.37 16 16 C -0.17 -2.45 1.34 -155.66 -0.21 -2.65 16 17 C 0.52 8.12 4.55 36.00 0.16 8.28 16 18 O -0.51 -9.70 16.83 -18.75 -0.32 -10.02 16 19 O -0.52 -6.38 13.08 -39.27 -0.51 -6.90 16 20 C -0.15 -1.66 9.93 -26.69 -0.27 -1.92 16 21 C -0.13 -1.83 7.58 -26.69 -0.20 -2.03 16 22 C 0.06 1.32 3.25 -3.83 -0.01 1.31 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.09 2.48 6.15 -51.93 -0.32 2.16 16 26 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.02 0.38 4.98 -51.92 -0.26 0.12 16 29 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 30 H 0.08 1.06 7.86 -51.92 -0.41 0.65 16 31 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.41 3.42 9.10 45.56 0.41 3.83 16 33 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.11 1.60 7.82 -51.93 -0.41 1.19 16 36 H 0.12 1.56 6.98 -51.93 -0.36 1.19 16 37 H 0.06 1.20 7.07 -51.93 -0.37 0.84 16 38 H 0.04 0.79 5.82 -51.93 -0.30 0.49 16 LS Contribution 297.96 15.07 4.49 4.49 Total: -1.00 -31.75 297.96 -8.25 -40.00 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.92 Total: 3.63 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.46 Total: -11.74 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.51 Total: -36.13 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.83 Total: -16.91 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.75 -8.25 -40.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.369 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds