Wall clock time and date at job start Sun Mar 29 2020 23:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00417 * 2 1 4 4 H 1.48493 * 109.47169 * 240.00311 * 3 2 1 5 5 H 1.48502 * 109.46694 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46907 * 119.99933 * 3 2 1 7 7 C 1.37883 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99375 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00316 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50309 * 299.92504 * 9 7 2 11 11 C 1.53122 * 109.50166 * 59.99772 * 9 7 2 12 12 C 1.53120 * 109.15927 * 177.63371 * 11 9 7 13 13 C 1.53037 * 109.28189 * 302.35139 * 12 11 9 14 14 N 1.46843 * 109.52411 * 59.17811 * 13 12 11 15 15 C 1.46893 * 111.00236 * 174.16324 * 14 13 12 16 16 C 1.53005 * 109.47235 * 76.30322 * 15 14 13 17 17 C 1.50690 * 115.55174 * 295.55769 * 16 15 14 18 18 O 1.20823 * 120.00088 * 125.18843 * 17 16 15 19 19 O 1.34236 * 120.00095 * 305.17907 * 17 16 15 20 20 C 1.53005 * 117.49822 * 149.88360 * 16 15 14 21 21 C 1.53002 * 117.49360 * 81.22496 * 16 15 14 22 22 C 1.46847 * 111.19847 * 298.25853 * 14 13 12 23 23 H 0.97001 * 120.00152 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.52047 * 57.73612 * 11 9 7 25 25 H 1.08999 * 109.58018 * 297.57356 * 11 9 7 26 26 H 1.09007 * 109.50157 * 182.40908 * 12 11 9 27 27 H 1.08999 * 109.50368 * 62.29303 * 12 11 9 28 28 H 1.09008 * 109.46002 * 299.16131 * 13 12 11 29 29 H 1.08999 * 109.45119 * 179.18985 * 13 12 11 30 30 H 1.09008 * 109.46849 * 316.31020 * 15 14 13 31 31 H 1.08998 * 109.47872 * 196.30907 * 15 14 13 32 32 H 0.96697 * 117.00059 * 175.04560 * 19 17 16 33 33 H 1.09003 * 117.49395 * 0.02562 * 20 16 15 34 34 H 1.08994 * 117.50145 * 145.02307 * 20 16 15 35 35 H 1.09002 * 117.49736 * 214.97872 * 21 16 15 36 36 H 1.09000 * 117.50212 * 359.97438 * 21 16 15 37 37 H 1.09004 * 109.46487 * 181.75822 * 22 14 13 38 38 H 1.09001 * 109.46545 * 301.72867 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6255 -2.5583 0.8902 11 6 0.3699 -2.5807 -1.2502 12 6 -0.3466 -3.9338 -1.2725 13 6 0.6928 -5.0566 -1.2407 14 7 1.5096 -4.9350 -0.0264 15 6 2.4264 -6.0748 0.1078 16 6 3.5977 -5.9040 -0.8617 17 6 3.2394 -5.9310 -2.3251 18 8 3.5625 -5.0146 -3.0432 19 8 2.5615 -6.9733 -2.8311 20 6 4.9458 -6.5015 -0.4532 21 6 4.7424 -4.9845 -0.4315 22 6 2.2441 -3.6636 -0.0056 23 1 -0.4850 0.8400 -0.0004 24 1 0.9908 -2.4827 -2.1407 25 1 -0.3676 -1.7784 -1.2302 26 1 -0.9424 -4.0151 -2.1817 27 1 -0.9972 -4.0155 -0.4018 28 1 1.3344 -4.9826 -2.1188 29 1 0.1853 -6.0212 -1.2419 30 1 1.8948 -6.9979 -0.1238 31 1 2.8038 -6.1194 1.1293 32 1 2.2902 -6.9127 -3.7572 33 1 4.9979 -7.0167 0.5060 34 1 5.5736 -6.9139 -1.2430 35 1 5.2366 -4.3994 -1.2071 36 1 4.6608 -4.5009 0.5420 37 1 2.8635 -3.6165 0.8901 38 1 2.8783 -3.5960 -0.8895 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:14 Heat of formation + Delta-G solvation = -89.479168 kcal Electronic energy + Delta-G solvation = -20095.679833 eV Core-core repulsion = 17130.633665 eV Total energy + Delta-G solvation = -2965.046169 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.98677 -39.77412 -37.94490 -37.05375 -35.31719 -33.23067 -31.71775 -28.14194 -26.93532 -25.92119 -23.90971 -23.33951 -22.86977 -21.02488 -20.28566 -18.96082 -18.45057 -17.71052 -17.00619 -16.70322 -16.07758 -15.68777 -15.47764 -15.15593 -14.92311 -14.39934 -14.29687 -14.11846 -13.49584 -13.29583 -12.91318 -12.84955 -12.66888 -12.58867 -12.52619 -12.41452 -12.02145 -11.87529 -11.71679 -11.41236 -11.36769 -11.14124 -10.82068 -10.64709 -10.38243 -9.14959 -8.08261 -6.21704 1.07086 1.39291 1.41231 1.48510 2.00235 2.41927 2.61467 3.16599 3.18557 3.53166 3.73096 3.95127 4.15670 4.19469 4.22774 4.37756 4.55886 4.61088 4.66779 4.72031 4.79679 4.85493 4.95501 4.99325 5.02192 5.07966 5.12813 5.19851 5.35737 5.49943 5.52746 5.62275 5.94358 6.09320 6.18625 6.31654 6.45708 6.90401 6.93551 7.45534 8.96425 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.025829 B = 0.007098 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.809820 B = 3943.825048 C = 4351.639588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.051 3.949 10 H -0.001 1.001 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.064 3.936 14 N -0.540 5.540 15 C 0.098 3.902 16 C -0.192 4.192 17 C 0.519 3.481 18 O -0.553 6.553 19 O -0.503 6.503 20 C -0.110 4.110 21 C -0.154 4.154 22 C 0.084 3.916 23 H 0.260 0.740 24 H 0.007 0.993 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.012 0.988 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.424 0.576 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.055 -16.245 -1.537 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.032 3.968 10 H 0.018 0.982 11 C -0.141 4.141 12 C -0.150 4.150 13 C -0.063 4.063 14 N -0.263 5.263 15 C -0.030 4.030 16 C -0.195 4.195 17 C 0.364 3.636 18 O -0.444 6.444 19 O -0.316 6.316 20 C -0.147 4.147 21 C -0.191 4.191 22 C -0.043 4.043 23 H 0.069 0.931 24 H 0.026 0.974 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.285 0.715 33 H 0.160 0.840 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.081 0.919 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.776 -15.924 -0.920 16.965 hybrid contribution 0.527 1.572 -1.687 2.366 sum 6.303 -14.352 -2.608 15.891 Atomic orbital electron populations 1.70022 1.07119 1.27071 1.51319 1.25715 0.95682 1.02277 0.94860 0.85715 0.78505 0.79297 0.78777 1.20205 1.20751 1.19222 1.21489 0.92909 0.92275 1.50623 0.93234 1.18613 0.93105 0.91726 0.93362 0.98235 1.21445 0.99002 0.96410 0.97256 1.21603 0.97597 0.94827 1.00995 1.22138 0.94900 0.99285 0.90002 1.62179 1.23887 1.02634 1.37574 1.22009 0.88872 0.94323 0.97759 1.21888 0.95780 1.12473 0.89383 1.22421 0.72908 0.78166 0.90088 1.90743 1.53522 1.38159 1.62000 1.84469 1.68010 1.43454 1.35700 1.23283 0.91759 0.94814 1.04860 1.23182 0.97986 0.94543 1.03384 1.22040 0.95190 0.88272 0.98822 0.93084 0.97363 0.92364 0.91705 0.92331 0.96967 0.88832 0.88003 0.87569 0.71502 0.84022 0.87575 0.89798 0.86765 0.91910 0.96107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.77 11.35 21.45 0.24 -54.52 16 2 C 0.01 0.76 5.30 84.66 0.45 1.21 16 3 Si 0.95 45.19 29.54 68.60 2.03 47.22 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.53 -30.79 8.57 25.60 0.22 -30.57 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 9 C 0.05 2.68 2.26 -11.49 -0.03 2.65 16 10 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 11 C -0.10 -5.26 5.02 30.68 0.15 -5.11 16 12 C -0.11 -4.54 6.09 30.65 0.19 -4.35 16 13 C 0.06 2.23 4.83 86.33 0.42 2.65 16 14 N -0.54 -19.03 4.86 -896.35 -4.36 -23.38 16 15 C 0.10 2.51 5.53 86.31 0.48 2.99 16 16 C -0.19 -5.00 1.34 -52.93 -0.07 -5.08 16 17 C 0.52 15.44 4.55 71.23 0.32 15.76 16 18 O -0.55 -21.27 16.83 21.97 0.37 -20.90 16 19 O -0.50 -11.06 13.08 -51.48 -0.67 -11.73 16 20 C -0.11 -2.00 9.93 30.62 0.30 -1.70 16 21 C -0.15 -4.07 7.58 30.62 0.23 -3.84 16 22 C 0.08 3.60 3.25 86.33 0.28 3.88 16 23 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 24 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 25 H 0.06 3.33 6.15 -2.39 -0.01 3.31 16 26 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.01 0.45 4.98 -2.38 -0.01 0.44 16 29 H 0.09 2.65 7.95 -2.39 -0.02 2.63 16 30 H 0.10 2.20 7.86 -2.38 -0.02 2.19 16 31 H 0.11 2.31 8.10 -2.39 -0.02 2.29 16 32 H 0.42 6.11 9.10 -74.06 -0.67 5.43 16 33 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 2.58 7.82 -2.39 -0.02 2.56 16 36 H 0.11 2.98 6.98 -2.39 -0.02 2.97 16 37 H 0.06 2.59 7.07 -2.38 -0.02 2.57 16 38 H 0.02 0.95 5.82 -2.39 -0.01 0.94 16 Total: -1.00 -71.25 297.96 0.95 -70.31 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.39 Total: 14.51 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 2.95 Total: -21.50 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -4.11 Total: -77.90 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.30 Total: -32.63 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.25 0.95 -70.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.172 kcal (2) G-P(sol) polarization free energy of solvation -71.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds