Wall clock time and date at job start Sun Mar 29 2020 23:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36815 * 119.99674 * 2 1 4 4 H 1.08004 * 120.00066 * 203.19674 * 3 2 1 5 5 C 1.39074 * 120.00493 * 23.20095 * 3 2 1 6 6 N 1.31349 * 119.99679 * 16.37322 * 5 3 2 7 7 Si 1.86802 * 120.00173 * 196.37699 * 5 3 2 8 8 H 1.48500 * 109.47333 * 60.00193 * 7 5 3 9 9 H 1.48506 * 109.46967 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47172 * 299.99569 * 7 5 3 11 11 C 1.34773 * 120.00129 * 179.97438 * 2 1 3 12 12 O 1.21661 * 120.00072 * 180.27125 * 11 2 1 13 13 C 1.46956 * 119.99902 * 0.02562 * 11 2 1 14 14 C 1.33125 * 119.99874 * 180.02562 * 13 11 2 15 15 C 1.50696 * 119.99701 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.54452 * 359.97438 * 15 14 13 17 17 C 1.53175 * 109.54433 * 239.81532 * 15 14 13 18 18 C 1.53106 * 109.15853 * 183.24249 * 17 15 14 19 19 O 1.42899 * 109.48671 * 57.47663 * 18 17 15 20 20 C 1.42902 * 114.09641 * 298.89189 * 19 18 17 21 21 C 1.53085 * 109.42020 * 61.15992 * 20 19 18 22 22 H 1.08997 * 109.47356 * 264.83178 * 1 2 3 23 23 H 1.09004 * 109.46901 * 24.82940 * 1 2 3 24 24 H 1.08992 * 109.46976 * 144.83079 * 1 2 3 25 25 H 0.97005 * 119.99912 * 180.02562 * 6 5 3 26 26 H 1.07996 * 120.00027 * 359.97438 * 13 11 2 27 27 H 1.08001 * 119.99640 * 359.97438 * 14 13 11 28 28 H 1.09000 * 109.47216 * 60.00285 * 16 15 14 29 29 H 1.09005 * 109.46812 * 179.97438 * 16 15 14 30 30 H 1.08993 * 109.47149 * 299.99547 * 16 15 14 31 31 H 1.09001 * 109.52284 * 303.06614 * 17 15 14 32 32 H 1.09000 * 109.51860 * 63.24908 * 17 15 14 33 33 H 1.09000 * 109.40637 * 297.49844 * 18 17 15 34 34 H 1.09004 * 109.49113 * 177.51030 * 18 17 15 35 35 H 1.09002 * 109.48183 * 301.16938 * 20 19 18 36 36 H 1.09007 * 109.48600 * 181.14720 * 20 19 18 37 37 H 1.09002 * 109.52755 * 182.48773 * 21 20 19 38 38 H 1.08996 * 109.57787 * 62.32136 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1849 0.0000 4 1 3.1636 1.2228 -0.3684 5 6 1.5381 2.3406 0.4745 6 7 0.4520 2.2554 1.2083 7 14 2.2619 4.0141 0.0681 8 1 2.2844 4.1992 -1.4051 9 1 1.4298 5.0769 0.6874 10 1 3.6464 4.0966 0.5987 11 6 2.1389 -1.1671 0.0005 12 8 3.3555 -1.1671 0.0055 13 6 1.4042 -2.4398 0.0005 14 6 2.0698 -3.5927 0.0016 15 6 1.3163 -4.8978 0.0021 16 6 -0.1883 -4.6201 0.0020 17 6 1.6881 -5.7036 1.2506 18 6 0.9808 -7.0606 1.2019 19 8 1.3470 -7.7462 0.0028 20 6 0.9800 -7.0611 -1.1964 21 6 1.6890 -5.7052 -1.2452 22 1 -0.3634 -0.0926 1.0234 23 1 -0.3633 0.9327 -0.4316 24 1 -0.3633 -0.8400 -0.5919 25 1 0.0256 3.0616 1.5389 26 1 0.3242 -2.4398 0.0005 27 1 3.1498 -3.5926 0.0020 28 1 -0.4523 -4.0493 -0.8882 29 1 -0.7321 -5.5648 0.0020 30 1 -0.4523 -4.0485 0.8917 31 1 2.7669 -5.8572 1.2771 32 1 1.3748 -5.1598 2.1418 33 1 -0.0983 -6.9073 1.2178 34 1 1.2763 -7.6560 2.0658 35 1 -0.0991 -6.9078 -1.2118 36 1 1.2749 -7.6568 -2.0603 37 1 1.3762 -5.1624 -2.1373 38 1 2.7679 -5.8579 -1.2713 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631668796.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:11 Heat of formation + Delta-G solvation = -64.846537 kcal Electronic energy + Delta-G solvation = -19030.319556 eV Core-core repulsion = 16066.341539 eV Total energy + Delta-G solvation = -2963.978018 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.01323 -38.34586 -35.91554 -34.62121 -31.75922 -31.19439 -30.89523 -27.63534 -26.48093 -25.32917 -24.11790 -23.62130 -21.23363 -18.86974 -17.61288 -17.02129 -16.68904 -16.05463 -15.68163 -15.00391 -14.68110 -14.58348 -14.43721 -13.92895 -13.77095 -13.28512 -12.52410 -12.46951 -12.01529 -11.91226 -11.74018 -11.50291 -11.35034 -11.33361 -11.28065 -10.89023 -10.71935 -10.62637 -10.40884 -10.29243 -10.21585 -9.47974 -9.04766 -8.69467 -8.37178 -7.67751 -6.38461 -3.86267 2.16578 3.20351 3.22744 3.27116 3.80418 4.11534 4.39467 4.62677 4.75436 4.77251 4.98538 5.05370 5.14701 5.19379 5.21453 5.27659 5.50262 5.56275 5.64052 5.72673 5.75041 5.87565 5.88830 5.96113 6.08085 6.17290 6.24072 6.34482 6.42258 6.79608 7.03170 7.08503 7.10956 7.14880 7.52887 8.15033 8.49422 9.18755 9.41616 10.03387 10.66577 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.052069 B = 0.004301 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.615795 B = 6509.197819 C = 6667.549514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.435 5.435 3 C -0.306 4.306 4 H 0.099 0.901 5 C 0.031 3.969 6 N -0.875 5.875 7 Si 0.926 3.074 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.464 3.536 12 O -0.598 6.598 13 C -0.174 4.174 14 C -0.110 4.110 15 C -0.031 4.031 16 C -0.151 4.151 17 C -0.142 4.142 18 C 0.060 3.940 19 O -0.386 6.386 20 C 0.060 3.940 21 C -0.141 4.141 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.028 0.972 25 H 0.269 0.731 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 -14.451 -2.255 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.152 5.152 3 C -0.434 4.434 4 H 0.117 0.883 5 C -0.173 4.173 6 N -0.513 5.513 7 Si 0.753 3.247 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.197 1.197 11 C 0.254 3.746 12 O -0.485 6.485 13 C -0.195 4.195 14 C -0.131 4.131 15 C -0.031 4.031 16 C -0.208 4.208 17 C -0.180 4.180 18 C -0.016 4.016 19 O -0.304 6.304 20 C -0.016 4.016 21 C -0.179 4.179 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.457 -14.419 -2.153 15.245 hybrid contribution -0.055 1.336 -0.022 1.337 sum -4.512 -13.083 -2.175 14.009 Atomic orbital electron populations 1.21503 0.81352 1.00058 1.00482 1.43506 1.05471 1.04972 1.61216 1.19644 1.00158 0.83973 1.39603 0.88290 1.25375 0.96694 1.00232 0.95026 1.69988 1.20406 1.29827 1.31081 0.85997 0.79074 0.80771 0.78898 1.19827 1.20881 1.19671 1.18246 0.87541 0.83986 0.84785 1.90594 1.13760 1.87293 1.56887 1.23082 1.00059 0.93627 1.02772 1.23255 1.00042 0.91949 0.97880 1.19625 0.95139 0.93378 0.94992 1.22093 0.94560 1.01401 1.02768 1.22207 1.01864 0.95818 0.98083 1.22627 0.98391 0.93118 0.87511 1.87903 1.82071 1.46582 1.13891 1.22623 0.98369 0.93112 0.87545 1.22198 1.01851 0.95829 0.98024 0.93035 0.90778 0.95297 0.92053 0.86302 0.86227 0.91916 0.92580 0.91794 0.90754 0.90503 0.92994 0.89056 0.92990 0.89084 0.90590 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.48 8.31 59.85 0.50 2.98 16 2 N -0.44 -11.53 3.00 -123.60 -0.37 -11.90 16 3 C -0.31 -8.71 9.24 -15.02 -0.14 -8.85 16 4 H 0.10 2.95 7.44 -52.48 -0.39 2.56 16 5 C 0.03 0.82 4.95 -17.45 -0.09 0.74 16 6 N -0.87 -23.46 10.98 55.50 0.61 -22.85 16 7 Si 0.93 20.77 29.58 -169.99 -5.03 15.74 16 8 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 C 0.46 11.92 7.57 -12.73 -0.10 11.82 16 12 O -0.60 -17.46 15.92 5.22 0.08 -17.38 16 13 C -0.17 -3.43 8.18 -37.83 -0.31 -3.74 16 14 C -0.11 -1.90 8.35 -36.09 -0.30 -2.20 16 15 C -0.03 -0.40 0.74 -155.47 -0.12 -0.52 16 16 C -0.15 -1.76 6.58 37.16 0.24 -1.51 16 17 C -0.14 -1.69 4.91 -26.59 -0.13 -1.82 16 18 C 0.06 0.62 6.57 37.21 0.24 0.87 16 19 O -0.39 -4.60 10.77 -35.23 -0.38 -4.98 16 20 C 0.06 0.61 6.57 37.20 0.24 0.86 16 21 C -0.14 -1.64 4.91 -26.59 -0.13 -1.77 16 22 H 0.05 1.18 7.89 -51.93 -0.41 0.77 16 23 H 0.07 1.75 6.75 -51.93 -0.35 1.40 16 24 H 0.03 0.54 6.40 -51.93 -0.33 0.21 16 25 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.12 2.05 4.03 -52.49 -0.21 1.84 16 27 H 0.12 2.28 7.49 -52.49 -0.39 1.89 16 28 H 0.06 0.73 7.50 -51.93 -0.39 0.34 16 29 H 0.06 0.55 5.02 -51.93 -0.26 0.29 16 30 H 0.06 0.77 7.51 -51.93 -0.39 0.38 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.49 6.61 -51.93 -0.34 0.15 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.48 6.60 -51.93 -0.34 0.14 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 298.86 15.07 4.50 4.50 Total: -1.00 -31.89 298.86 -6.15 -38.04 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.49 Total: 1.96 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -0.08 Total: -3.14 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.24 Total: -34.74 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.30 Total: -22.36 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.89 -6.15 -38.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631668796.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.806 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds