Wall clock time and date at job start Sun Mar 29 2020 23:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36815 * 119.99674 * 2 1 4 4 H 1.08004 * 120.00066 * 203.19674 * 3 2 1 5 5 C 1.39074 * 120.00493 * 23.20095 * 3 2 1 6 6 N 1.31349 * 119.99679 * 16.37322 * 5 3 2 7 7 Si 1.86802 * 120.00173 * 196.37699 * 5 3 2 8 8 H 1.48500 * 109.47333 * 60.00193 * 7 5 3 9 9 H 1.48506 * 109.46967 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47172 * 299.99569 * 7 5 3 11 11 C 1.34773 * 120.00129 * 179.97438 * 2 1 3 12 12 O 1.21661 * 120.00072 * 180.27125 * 11 2 1 13 13 C 1.46956 * 119.99902 * 0.02562 * 11 2 1 14 14 C 1.33125 * 119.99874 * 180.02562 * 13 11 2 15 15 C 1.50696 * 119.99701 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.54452 * 359.97438 * 15 14 13 17 17 C 1.53175 * 109.54433 * 239.81532 * 15 14 13 18 18 C 1.53106 * 109.15853 * 183.24249 * 17 15 14 19 19 O 1.42899 * 109.48671 * 57.47663 * 18 17 15 20 20 C 1.42902 * 114.09641 * 298.89189 * 19 18 17 21 21 C 1.53085 * 109.42020 * 61.15992 * 20 19 18 22 22 H 1.08997 * 109.47356 * 264.83178 * 1 2 3 23 23 H 1.09004 * 109.46901 * 24.82940 * 1 2 3 24 24 H 1.08992 * 109.46976 * 144.83079 * 1 2 3 25 25 H 0.97005 * 119.99912 * 180.02562 * 6 5 3 26 26 H 1.07996 * 120.00027 * 359.97438 * 13 11 2 27 27 H 1.08001 * 119.99640 * 359.97438 * 14 13 11 28 28 H 1.09000 * 109.47216 * 60.00285 * 16 15 14 29 29 H 1.09005 * 109.46812 * 179.97438 * 16 15 14 30 30 H 1.08993 * 109.47149 * 299.99547 * 16 15 14 31 31 H 1.09001 * 109.52284 * 303.06614 * 17 15 14 32 32 H 1.09000 * 109.51860 * 63.24908 * 17 15 14 33 33 H 1.09000 * 109.40637 * 297.49844 * 18 17 15 34 34 H 1.09004 * 109.49113 * 177.51030 * 18 17 15 35 35 H 1.09002 * 109.48183 * 301.16938 * 20 19 18 36 36 H 1.09007 * 109.48600 * 181.14720 * 20 19 18 37 37 H 1.09002 * 109.52755 * 182.48773 * 21 20 19 38 38 H 1.08996 * 109.57787 * 62.32136 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1849 0.0000 4 1 3.1636 1.2228 -0.3684 5 6 1.5381 2.3406 0.4745 6 7 0.4520 2.2554 1.2083 7 14 2.2619 4.0141 0.0681 8 1 2.2844 4.1992 -1.4051 9 1 1.4298 5.0769 0.6874 10 1 3.6464 4.0966 0.5987 11 6 2.1389 -1.1671 0.0005 12 8 3.3555 -1.1671 0.0055 13 6 1.4042 -2.4398 0.0005 14 6 2.0698 -3.5927 0.0016 15 6 1.3163 -4.8978 0.0021 16 6 -0.1883 -4.6201 0.0020 17 6 1.6881 -5.7036 1.2506 18 6 0.9808 -7.0606 1.2019 19 8 1.3470 -7.7462 0.0028 20 6 0.9800 -7.0611 -1.1964 21 6 1.6890 -5.7052 -1.2452 22 1 -0.3634 -0.0926 1.0234 23 1 -0.3633 0.9327 -0.4316 24 1 -0.3633 -0.8400 -0.5919 25 1 0.0256 3.0616 1.5389 26 1 0.3242 -2.4398 0.0005 27 1 3.1498 -3.5926 0.0020 28 1 -0.4523 -4.0493 -0.8882 29 1 -0.7321 -5.5648 0.0020 30 1 -0.4523 -4.0485 0.8917 31 1 2.7669 -5.8572 1.2771 32 1 1.3748 -5.1598 2.1418 33 1 -0.0983 -6.9073 1.2178 34 1 1.2763 -7.6560 2.0658 35 1 -0.0991 -6.9078 -1.2118 36 1 1.2749 -7.6568 -2.0603 37 1 1.3762 -5.1624 -2.1373 38 1 2.7679 -5.8579 -1.2713 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631668796.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:11 Heat of formation + Delta-G solvation = -85.560621 kcal Electronic energy + Delta-G solvation = -19031.217786 eV Core-core repulsion = 16066.341539 eV Total energy + Delta-G solvation = -2964.876248 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04414 -40.20737 -37.12868 -36.55745 -33.76938 -32.35363 -32.04575 -28.64364 -28.34369 -26.95436 -25.60845 -24.48966 -22.72801 -20.19819 -19.02188 -18.95467 -18.35405 -17.03077 -16.87809 -16.58552 -16.14147 -15.83648 -15.70581 -15.45325 -15.26408 -14.78322 -13.97120 -13.76292 -13.42203 -13.28011 -13.25075 -13.05876 -12.86782 -12.63136 -12.39871 -12.38265 -12.24492 -12.14278 -11.83718 -11.68359 -11.14535 -11.05098 -10.48368 -10.30331 -10.21679 -9.72038 -8.42080 -6.00924 0.57814 1.38985 1.41875 1.50292 2.25254 2.48350 3.00729 3.08698 3.13584 3.67030 3.77076 3.82006 4.11916 4.12638 4.27838 4.32631 4.34446 4.44544 4.63183 4.72423 4.73333 4.76390 4.85266 4.95601 4.97613 5.05127 5.07117 5.17292 5.27549 5.29491 5.35589 5.39044 5.55671 5.63410 6.08853 6.31376 6.46791 7.12225 7.41372 8.01667 8.61561 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.052069 B = 0.004301 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.615795 B = 6509.197819 C = 6667.549514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.451 5.451 3 C -0.352 4.352 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.888 5.888 7 Si 0.991 3.009 8 H -0.265 1.265 9 H -0.266 1.266 10 H -0.277 1.277 11 C 0.450 3.550 12 O -0.649 6.649 13 C -0.196 4.196 14 C -0.075 4.075 15 C -0.031 4.031 16 C -0.151 4.151 17 C -0.142 4.142 18 C 0.063 3.937 19 O -0.402 6.402 20 C 0.062 3.938 21 C -0.141 4.141 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.277 0.723 26 H 0.149 0.851 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 -15.634 -2.480 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.167 5.167 3 C -0.480 4.480 4 H 0.087 0.913 5 C -0.202 4.202 6 N -0.526 5.526 7 Si 0.814 3.186 8 H -0.190 1.190 9 H -0.190 1.190 10 H -0.202 1.202 11 C 0.243 3.757 12 O -0.540 6.540 13 C -0.216 4.216 14 C -0.096 4.096 15 C -0.031 4.031 16 C -0.208 4.208 17 C -0.180 4.180 18 C -0.014 4.014 19 O -0.321 6.321 20 C -0.015 4.015 21 C -0.179 4.179 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.167 0.833 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.099 0.901 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.406 -15.612 -2.374 17.041 hybrid contribution 0.600 1.599 0.073 1.709 sum -5.806 -14.013 -2.301 15.342 Atomic orbital electron populations 1.21493 0.79205 1.01049 1.00674 1.43761 1.06931 1.04741 1.61296 1.19596 0.99991 0.86024 1.42404 0.91264 1.26142 0.96942 1.03061 0.94026 1.70040 1.20804 1.31148 1.30590 0.85045 0.78098 0.76448 0.79034 1.19022 1.18999 1.20239 1.19239 0.87402 0.85747 0.83332 1.90540 1.16154 1.88316 1.59019 1.22860 1.01049 0.91131 1.06550 1.23555 0.99176 0.93690 0.93207 1.19720 0.95874 0.91019 0.96459 1.22104 0.93058 1.02826 1.02801 1.22214 1.01488 0.96933 0.97392 1.22707 0.99071 0.91929 0.87670 1.87898 1.82444 1.47093 1.14646 1.22727 0.99098 0.91999 0.87633 1.22202 1.01479 0.96859 0.97318 0.93686 0.92170 0.91214 0.91314 0.83323 0.88808 0.91669 0.90066 0.92041 0.91968 0.90393 0.91296 0.87602 0.91251 0.87500 0.90068 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.33 8.31 127.77 1.06 6.39 16 2 N -0.45 -24.55 3.00 -663.19 -1.99 -26.54 16 3 C -0.35 -20.83 9.24 84.12 0.78 -20.05 16 4 H 0.07 4.39 7.44 -2.91 -0.02 4.37 16 5 C 0.00 0.07 4.95 84.97 0.42 0.49 16 6 N -0.89 -47.57 10.98 21.68 0.24 -47.33 16 7 Si 0.99 42.77 29.58 68.60 2.03 44.80 16 8 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 9 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 C 0.45 23.89 7.57 86.53 0.66 24.55 16 12 O -0.65 -39.95 15.92 -4.22 -0.07 -40.01 16 13 C -0.20 -7.63 8.18 23.41 0.19 -7.44 16 14 C -0.08 -2.57 8.35 24.54 0.20 -2.36 16 15 C -0.03 -0.73 0.74 -52.81 -0.04 -0.77 16 16 C -0.15 -2.99 6.58 71.98 0.47 -2.52 16 17 C -0.14 -3.12 4.91 30.69 0.15 -2.97 16 18 C 0.06 1.10 6.57 72.02 0.47 1.57 16 19 O -0.40 -8.35 10.77 -148.98 -1.60 -9.96 16 20 C 0.06 1.05 6.57 72.01 0.47 1.53 16 21 C -0.14 -2.97 4.91 30.69 0.15 -2.82 16 22 H 0.04 2.05 7.89 -2.39 -0.02 2.03 16 23 H 0.06 2.83 6.75 -2.38 -0.02 2.82 16 24 H 0.07 2.50 6.40 -2.39 -0.02 2.48 16 25 H 0.28 13.76 8.31 -92.70 -0.77 12.99 16 26 H 0.15 4.83 4.03 -2.91 -0.01 4.82 16 27 H 0.09 3.71 7.49 -2.91 -0.02 3.69 16 28 H 0.06 1.28 7.50 -2.39 -0.02 1.27 16 29 H 0.08 1.23 5.02 -2.38 -0.01 1.21 16 30 H 0.06 1.27 7.51 -2.39 -0.02 1.26 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.00 6.61 -2.39 -0.02 0.99 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 0.97 6.60 -2.39 -0.02 0.95 16 36 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -71.72 298.86 4.65 -67.08 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 1.05 Total: 16.36 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 4.99 Total: -4.40 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.75 Total: -73.87 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -1.67 Total: -49.97 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.72 4.65 -67.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631668796.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.485 kcal (2) G-P(sol) polarization free energy of solvation -71.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds