Wall clock time and date at job start Sun Mar 29 2020 23:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47366 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99888 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.46509 * 119.99743 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46808 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.96856 * 54.29378 * 16 15 14 18 18 C 1.54272 * 109.98275 * 175.56609 * 16 15 14 19 19 C 1.55045 * 103.71996 * 142.44609 * 18 16 15 20 20 C 1.54887 * 102.35900 * 322.95816 * 19 18 16 21 21 C 1.51440 * 109.98444 * 293.02483 * 16 15 14 22 22 O 1.20764 * 126.34108 * 60.98813 * 21 16 15 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 25 25 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 26 26 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 27 27 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 28 28 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 29 29 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 30 30 H 0.96995 * 120.00110 * 359.97438 * 14 12 11 31 31 H 1.09001 * 109.46760 * 299.99277 * 15 14 12 32 32 H 1.09001 * 109.47427 * 59.99999 * 15 14 12 33 33 H 1.09004 * 110.57150 * 261.03820 * 18 16 15 34 34 H 1.08997 * 110.56999 * 23.90584 * 18 16 15 35 35 H 1.09009 * 110.84445 * 204.73147 * 19 18 16 36 36 H 1.08998 * 110.97469 * 81.24890 * 19 18 16 37 37 H 1.08995 * 110.44556 * 278.86550 * 20 19 18 38 38 H 1.09000 * 110.54724 * 156.39374 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 6 2.4594 -6.1326 0.0048 13 8 3.6519 -5.9110 -0.0006 14 7 2.0102 -7.4032 0.0090 15 6 2.9622 -8.5168 0.0065 16 6 2.1972 -9.8418 0.0129 17 1 1.4892 -9.8669 -0.8155 18 6 3.1848 -11.0214 -0.1017 19 6 2.5729 -12.1046 0.8236 20 6 2.0067 -11.2607 1.9925 21 6 1.4628 -10.0091 1.3267 22 8 0.6039 -9.2815 1.7641 23 1 -0.4850 0.8401 0.0004 24 1 0.6281 -2.5552 0.8979 25 1 0.6206 -2.5586 -0.8820 26 1 2.8678 -3.6059 -0.8902 27 1 2.8760 -3.6028 0.8897 28 1 0.8573 -5.0435 0.9006 29 1 0.8498 -5.0461 -0.8793 30 1 1.0566 -7.5805 0.0144 31 1 3.5847 -8.4606 -0.8865 32 1 3.5930 -8.4576 0.8935 33 1 3.2360 -11.3796 -1.1299 34 1 4.1733 -10.7291 0.2527 35 1 3.3417 -12.7913 1.1781 36 1 1.7757 -12.6470 0.3153 37 1 2.7990 -11.0042 2.6956 38 1 1.2072 -11.7995 2.5011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634357879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:13 Heat of formation + Delta-G solvation = -108.856425 kcal Electronic energy + Delta-G solvation = -18007.144326 eV Core-core repulsion = 15041.257897 eV Total energy + Delta-G solvation = -2965.886430 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50077 -39.15467 -36.79390 -34.64565 -34.06816 -32.00927 -30.50644 -27.99387 -27.28501 -24.80098 -23.25738 -21.69028 -20.44358 -19.79941 -19.32191 -17.11346 -16.85633 -16.13458 -15.93075 -15.68718 -15.37102 -14.71297 -14.38547 -14.24484 -13.76124 -13.52894 -13.24115 -13.05594 -12.55333 -12.21004 -11.91544 -11.82913 -11.69038 -11.61360 -11.26854 -11.21441 -10.74083 -10.56423 -10.50617 -9.80293 -9.64697 -9.61208 -9.21330 -8.97524 -8.97335 -8.27280 -5.93115 -3.94477 1.56180 2.98304 3.27871 3.39655 3.42764 3.46818 3.68220 3.95881 4.29102 4.36279 4.53035 4.60734 4.78564 4.89913 4.98529 5.17950 5.26148 5.30893 5.36548 5.42654 5.47670 5.56343 5.63262 5.74397 5.80521 5.82202 6.33345 6.49026 6.79480 6.99792 7.11631 7.22457 7.65447 7.76383 7.89898 8.07974 8.50178 8.52419 9.12519 9.69053 11.18438 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.056081 B = 0.003133 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.159151 B = 8935.111586 C = 9217.664731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.139 4.139 12 C 0.514 3.486 13 O -0.541 6.541 14 N -0.741 5.741 15 C 0.134 3.866 16 C -0.165 4.165 17 H 0.109 0.891 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.185 4.185 21 C 0.368 3.632 22 O -0.432 6.432 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.404 0.596 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.230 -27.214 0.304 27.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.179 4.179 12 C 0.302 3.698 13 O -0.417 6.417 14 N -0.395 5.395 15 C 0.010 3.990 16 C -0.185 4.185 17 H 0.127 0.873 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.222 4.222 21 C 0.242 3.758 22 O -0.303 6.303 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.239 0.761 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.489 -26.526 0.536 26.760 hybrid contribution -0.037 0.709 -0.012 0.710 sum 3.452 -25.817 0.524 26.052 Atomic orbital electron populations 1.69959 1.06035 1.26609 1.51177 1.25027 0.94858 0.99228 0.95427 0.86648 0.79559 0.83079 0.78660 1.20235 1.21344 1.20246 1.21247 0.93153 0.91055 1.50189 0.92632 1.19130 0.93981 0.91430 0.97141 1.21440 0.98614 0.91567 1.01616 1.21841 0.98162 0.94019 1.03840 1.21265 0.90358 0.83695 0.74462 1.90667 1.17332 1.84807 1.48903 1.46180 1.10321 1.05676 1.77355 1.21149 0.91747 0.83142 1.02954 1.22661 0.99730 0.96786 0.99311 0.87259 1.22319 0.98341 0.93381 1.01062 1.22436 1.00789 0.97133 0.95373 1.22917 1.02891 0.96652 0.99753 1.24968 0.79379 0.84350 0.87133 1.90460 1.25954 1.46073 1.67817 0.93032 0.96603 0.96591 0.92732 0.92758 0.89295 0.89374 0.76135 0.90488 0.91470 0.90032 0.90078 0.90078 0.90656 0.87666 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.44 29.54 -169.99 -5.02 17.42 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -15.39 9.11 -34.44 -0.31 -15.70 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.09 -2.13 4.44 -26.73 -0.12 -2.25 16 11 C -0.14 -2.48 5.70 -27.89 -0.16 -2.64 16 12 C 0.51 8.83 7.83 -10.99 -0.09 8.75 16 13 O -0.54 -11.23 15.98 5.55 0.09 -11.14 16 14 N -0.74 -9.63 5.24 -60.28 -0.32 -9.95 16 15 C 0.13 1.39 4.93 -4.04 -0.02 1.37 16 16 C -0.17 -1.16 2.91 -90.74 -0.26 -1.43 16 17 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 18 C -0.11 -0.51 6.41 -24.98 -0.16 -0.67 16 19 C -0.12 -0.45 6.95 -24.66 -0.17 -0.62 16 20 C -0.18 -1.03 6.72 -26.32 -0.18 -1.21 16 21 C 0.37 3.21 7.07 -28.11 -0.20 3.02 16 22 O -0.43 -5.44 16.94 6.00 0.10 -5.34 16 23 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 27 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.40 4.66 7.61 -40.82 -0.31 4.35 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.36 7.85 -51.93 -0.41 -0.05 16 35 H 0.08 0.22 8.14 -51.92 -0.42 -0.21 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 320.22 15.07 4.83 4.83 Total: -1.00 -35.33 320.22 -7.66 -42.99 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.17 Total: -2.42 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.90 Total: -9.43 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.42 Total: -36.91 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.19 Total: -16.47 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.33 -7.66 -42.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634357879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.867 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds