Wall clock time and date at job start Sun Mar 29 2020 23:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47366 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99888 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.46509 * 119.99743 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46808 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.96856 * 54.29378 * 16 15 14 18 18 C 1.54272 * 109.98275 * 175.56609 * 16 15 14 19 19 C 1.55045 * 103.71996 * 142.44609 * 18 16 15 20 20 C 1.54887 * 102.35900 * 322.95816 * 19 18 16 21 21 C 1.51440 * 109.98444 * 293.02483 * 16 15 14 22 22 O 1.20764 * 126.34108 * 60.98813 * 21 16 15 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 25 25 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 26 26 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 27 27 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 28 28 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 29 29 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 30 30 H 0.96995 * 120.00110 * 359.97438 * 14 12 11 31 31 H 1.09001 * 109.46760 * 299.99277 * 15 14 12 32 32 H 1.09001 * 109.47427 * 59.99999 * 15 14 12 33 33 H 1.09004 * 110.57150 * 261.03820 * 18 16 15 34 34 H 1.08997 * 110.56999 * 23.90584 * 18 16 15 35 35 H 1.09009 * 110.84445 * 204.73147 * 19 18 16 36 36 H 1.08998 * 110.97469 * 81.24890 * 19 18 16 37 37 H 1.08995 * 110.44556 * 278.86550 * 20 19 18 38 38 H 1.09000 * 110.54724 * 156.39374 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 6 2.4594 -6.1326 0.0048 13 8 3.6519 -5.9110 -0.0006 14 7 2.0102 -7.4032 0.0090 15 6 2.9622 -8.5168 0.0065 16 6 2.1972 -9.8418 0.0129 17 1 1.4892 -9.8669 -0.8155 18 6 3.1848 -11.0214 -0.1017 19 6 2.5729 -12.1046 0.8236 20 6 2.0067 -11.2607 1.9925 21 6 1.4628 -10.0091 1.3267 22 8 0.6039 -9.2815 1.7641 23 1 -0.4850 0.8401 0.0004 24 1 0.6281 -2.5552 0.8979 25 1 0.6206 -2.5586 -0.8820 26 1 2.8678 -3.6059 -0.8902 27 1 2.8760 -3.6028 0.8897 28 1 0.8573 -5.0435 0.9006 29 1 0.8498 -5.0461 -0.8793 30 1 1.0566 -7.5805 0.0144 31 1 3.5847 -8.4606 -0.8865 32 1 3.5930 -8.4576 0.8935 33 1 3.2360 -11.3796 -1.1299 34 1 4.1733 -10.7291 0.2527 35 1 3.3417 -12.7913 1.1781 36 1 1.7757 -12.6470 0.3153 37 1 2.7990 -11.0042 2.6956 38 1 1.2072 -11.7995 2.5011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634357879.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:12 Heat of formation + Delta-G solvation = -132.493394 kcal Electronic energy + Delta-G solvation = -18008.169302 eV Core-core repulsion = 15041.257897 eV Total energy + Delta-G solvation = -2966.911405 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31373 -40.38693 -37.47887 -36.19445 -35.56604 -34.04404 -31.41728 -29.61479 -27.95594 -26.20777 -24.73881 -22.46043 -21.93464 -21.09827 -20.10771 -18.62585 -17.84893 -17.67053 -17.00640 -16.73259 -16.58283 -16.41850 -15.49102 -15.28103 -14.88952 -14.58823 -14.26442 -14.05946 -13.85206 -13.67404 -13.57004 -13.07223 -12.61711 -12.53328 -12.47526 -12.40459 -12.23692 -12.04424 -11.58114 -11.55672 -11.48497 -11.29787 -10.78939 -10.55534 -10.51788 -10.08512 -8.20948 -6.31605 0.88139 1.38745 1.42362 1.50440 1.60607 2.17496 2.41554 3.09697 3.11702 3.43863 3.75270 3.79743 3.95335 4.18358 4.20551 4.23530 4.25990 4.34810 4.59452 4.66129 4.67617 4.79625 4.91440 4.93938 5.00922 5.08214 5.16816 5.19408 5.21916 5.37650 5.41309 5.52587 5.73030 5.84995 6.25666 6.43369 6.49772 6.83661 7.20575 7.37037 8.90662 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.056081 B = 0.003133 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.159151 B = 8935.111586 C = 9217.664731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.053 0.947 9 C 0.026 3.974 10 C -0.081 4.081 11 C -0.133 4.133 12 C 0.516 3.484 13 O -0.582 6.582 14 N -0.724 5.724 15 C 0.129 3.871 16 C -0.157 4.157 17 H 0.121 0.879 18 C -0.108 4.108 19 C -0.111 4.111 20 C -0.183 4.183 21 C 0.361 3.639 22 O -0.479 6.479 23 H 0.265 0.735 24 H -0.002 1.002 25 H 0.001 0.999 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.413 0.587 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -28.713 -0.103 28.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.119 4.119 11 C -0.173 4.173 12 C 0.304 3.696 13 O -0.462 6.462 14 N -0.377 5.377 15 C 0.006 3.994 16 C -0.177 4.177 17 H 0.139 0.861 18 C -0.146 4.146 19 C -0.148 4.148 20 C -0.221 4.221 21 C 0.238 3.762 22 O -0.353 6.353 23 H 0.074 0.926 24 H 0.016 0.984 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.249 0.751 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.150 -28.087 0.123 28.393 hybrid contribution -0.278 1.116 0.120 1.156 sum 3.873 -26.971 0.243 27.249 Atomic orbital electron populations 1.70073 1.07606 1.27918 1.51478 1.25955 0.95852 1.03222 0.94595 0.85513 0.78352 0.78143 0.79124 1.19245 1.20304 1.19409 1.21670 0.93402 0.92742 1.50941 0.92888 1.19017 0.94207 0.92495 0.95416 1.21153 0.97599 0.92754 1.00389 1.21685 0.98062 0.92110 1.05418 1.20995 0.89367 0.84798 0.74409 1.90651 1.18696 1.85528 1.51305 1.46060 1.11379 1.05064 1.75235 1.21357 0.91663 0.83640 1.02744 1.22683 1.00134 0.95884 0.98956 0.86092 1.22361 0.97606 0.92222 1.02406 1.22453 1.01407 0.96776 0.94189 1.22973 1.03139 0.95406 1.00569 1.25596 0.78263 0.84637 0.87693 1.90441 1.28065 1.47844 1.68987 0.92617 0.98383 0.98048 0.93721 0.94157 0.88176 0.87392 0.75081 0.90042 0.92349 0.88313 0.89824 0.88288 0.89739 0.86976 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.96 46.04 29.54 68.60 2.03 48.06 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.55 -33.23 9.11 25.60 0.23 -33.00 16 8 H 0.05 3.15 7.74 -2.92 -0.02 3.12 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.08 -3.74 4.44 30.59 0.14 -3.61 16 11 C -0.13 -4.74 5.70 29.85 0.17 -4.57 16 12 C 0.52 17.66 7.83 87.66 0.69 18.34 16 13 O -0.58 -24.38 15.98 -3.05 -0.05 -24.43 16 14 N -0.72 -18.28 5.24 -463.03 -2.43 -20.70 16 15 C 0.13 2.53 4.93 86.38 0.43 2.96 16 16 C -0.16 -1.91 2.91 -10.87 -0.03 -1.94 16 17 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 18 C -0.11 -0.65 6.41 31.73 0.20 -0.44 16 19 C -0.11 -0.47 6.95 31.94 0.22 -0.25 16 20 C -0.18 -1.68 6.72 30.86 0.21 -1.47 16 21 C 0.36 5.89 7.07 29.70 0.21 6.10 16 22 O -0.48 -11.97 16.94 -1.46 -0.02 -12.00 16 23 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 24 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 25 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.04 2.12 8.10 -2.39 -0.02 2.10 16 27 H 0.04 1.94 8.10 -2.38 -0.02 1.92 16 28 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 30 H 0.41 9.12 7.61 -92.71 -0.71 8.42 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.08 0.50 7.85 -2.39 -0.02 0.48 16 35 H 0.10 0.15 8.14 -2.38 -0.02 0.13 16 36 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -77.31 320.22 3.22 -74.09 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.33 Total: 8.33 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 3.07 Total: -15.75 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.14 Total: -78.31 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.07 Total: -36.43 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -77.31 3.22 -74.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634357879.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.400 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds