Wall clock time and date at job start Sun Mar 29 2020 23:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46866 * 2 1 4 4 C 1.37091 * 120.00344 * 264.78058 * 3 2 1 5 5 H 1.08007 * 119.99948 * 146.16978 * 4 3 2 6 6 C 1.38948 * 120.00170 * 326.16950 * 4 3 2 7 7 N 1.31410 * 119.99957 * 337.70780 * 6 4 3 8 8 Si 1.86797 * 119.99936 * 157.71215 * 6 4 3 9 9 H 1.48497 * 109.47344 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47302 * 120.00162 * 8 6 4 11 11 H 1.48505 * 109.46883 * 239.99916 * 8 6 4 12 12 C 1.34782 * 119.99491 * 84.78188 * 3 2 1 13 13 O 1.21295 * 119.99887 * 179.97438 * 12 3 2 14 14 C 1.50702 * 120.00080 * 359.97438 * 12 3 2 15 15 H 1.08998 * 115.56864 * 325.72354 * 14 12 3 16 16 C 1.53057 * 117.50442 * 111.44710 * 14 12 3 17 17 C 1.52694 * 117.50485 * 179.97438 * 14 12 3 18 18 C 1.53254 * 117.88010 * 144.74853 * 17 14 12 19 19 C 1.53329 * 108.48053 * 163.72488 * 18 17 14 20 20 O 1.42874 * 109.32206 * 53.99095 * 19 18 17 21 21 C 1.42873 * 114.51126 * 295.63272 * 20 19 18 22 22 C 1.53246 * 117.88990 * 0.32210 * 17 14 12 23 23 H 1.08997 * 109.47150 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46853 * 299.98980 * 1 2 3 25 25 H 1.08999 * 109.47558 * 59.99398 * 1 2 3 26 26 H 1.09006 * 109.46853 * 240.01020 * 2 1 3 27 27 H 1.08999 * 109.47558 * 120.00602 * 2 1 3 28 28 H 0.97000 * 119.99916 * 180.02562 * 7 6 4 29 29 H 1.09007 * 117.50907 * 0.02562 * 16 14 12 30 30 H 1.09006 * 117.53717 * 214.91987 * 16 14 12 31 31 H 1.08997 * 109.63764 * 44.03006 * 18 17 14 32 32 H 1.08999 * 109.80325 * 283.51517 * 18 17 14 33 33 H 1.09002 * 109.49766 * 294.04217 * 19 18 17 34 34 H 1.08995 * 109.50035 * 173.94293 * 19 18 17 35 35 H 1.08998 * 109.49622 * 184.32197 * 21 20 19 36 36 H 1.09001 * 109.49423 * 304.41572 * 21 20 19 37 37 H 1.09007 * 109.63228 * 315.96919 * 22 17 14 38 38 H 1.09003 * 109.64046 * 76.57444 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3486 1.9916 -1.1823 5 1 2.1807 3.0510 -1.3084 6 6 2.8994 1.2473 -2.2183 7 7 3.5036 0.1091 -1.9606 8 14 2.7810 1.8645 -3.9773 9 1 2.0570 3.1609 -3.9994 10 1 4.1469 2.0503 -4.5298 11 1 2.0444 0.8727 -4.8014 12 6 2.1428 2.0519 1.1625 13 8 2.5475 3.1954 1.1626 14 6 1.7791 1.3811 2.4621 15 1 0.9460 0.6801 2.4126 16 6 2.9169 1.0595 3.4340 17 6 1.9427 2.1933 3.7447 18 6 0.9229 1.9731 4.8673 19 6 1.4953 2.5554 6.1651 20 8 1.8670 3.9178 5.9483 21 6 2.9240 4.1009 5.0046 22 6 2.4563 3.6319 3.6217 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8884 -0.4103 -2.6838 29 1 3.9283 1.3334 3.1336 30 1 2.8324 0.1471 4.0246 31 1 0.7418 0.9057 4.9935 32 1 -0.0119 2.4766 4.6211 33 1 2.3727 1.9824 6.4651 34 1 0.7411 2.5047 6.9503 35 1 3.1924 5.1563 4.9592 36 1 3.7916 3.5173 5.3125 37 1 3.2916 3.6640 2.9222 38 1 1.6533 4.2786 3.2679 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368408708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:50 Heat of formation + Delta-G solvation = -54.756686 kcal Electronic energy + Delta-G solvation = -19661.662838 eV Core-core repulsion = 16698.122350 eV Total energy + Delta-G solvation = -2963.540489 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.90217 -38.17800 -36.02746 -34.73059 -32.01222 -30.96124 -29.77975 -29.44150 -25.52226 -23.47591 -23.13399 -22.93674 -21.86767 -19.03940 -18.13181 -16.85778 -16.21763 -15.76059 -15.65881 -14.94083 -14.67339 -14.32279 -13.99486 -13.57830 -13.23648 -12.99877 -12.81115 -12.51355 -11.99813 -11.87363 -11.71167 -11.46567 -11.10018 -11.04742 -10.91919 -10.74144 -10.41470 -10.34434 -10.30010 -10.08289 -10.05705 -9.45288 -9.04648 -8.88372 -8.11796 -7.47739 -6.33142 -3.93418 3.13863 3.25910 3.32612 3.62337 4.05457 4.10233 4.36428 4.68567 4.99196 5.02658 5.16440 5.18458 5.26777 5.37895 5.49348 5.61960 5.70897 5.79468 5.82483 5.94819 6.00462 6.00557 6.07382 6.12157 6.23549 6.36092 6.43819 6.47853 6.57404 6.62658 6.89300 6.98620 7.28933 7.41617 7.59898 8.26168 8.53221 9.20621 9.44274 10.05711 10.70391 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.036313 B = 0.005831 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.886848 B = 4800.705131 C = 5182.652806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 N -0.436 5.436 4 C -0.305 4.305 5 H 0.092 0.908 6 C 0.034 3.966 7 N -0.869 5.869 8 Si 0.916 3.084 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.485 3.515 13 O -0.578 6.578 14 C -0.161 4.161 15 H 0.110 0.890 16 C -0.151 4.151 17 C -0.104 4.104 18 C -0.116 4.116 19 C 0.068 3.932 20 O -0.390 6.390 21 C 0.059 3.941 22 C -0.107 4.107 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.113 0.887 27 H 0.048 0.952 28 H 0.267 0.733 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.104 0.896 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 -1.521 10.755 11.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.028 4.028 3 N -0.154 5.154 4 C -0.433 4.433 5 H 0.110 0.890 6 C -0.169 4.169 7 N -0.508 5.508 8 Si 0.743 3.257 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.274 3.726 13 O -0.462 6.462 14 C -0.183 4.183 15 H 0.128 0.872 16 C -0.189 4.189 17 C -0.104 4.104 18 C -0.154 4.154 19 C -0.009 4.009 20 O -0.309 6.309 21 C -0.017 4.017 22 C -0.144 4.144 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.130 0.870 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.122 0.878 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.573 -0.958 10.697 11.318 hybrid contribution 0.000 -0.412 -1.149 1.221 sum -3.573 -1.370 9.548 10.286 Atomic orbital electron populations 1.22227 0.98374 1.00238 1.01461 1.21576 0.91561 0.85575 1.04071 1.43471 1.55429 1.11777 1.04757 1.19503 1.39561 0.95457 0.88783 0.89005 1.25324 0.94593 0.96514 1.00502 1.69935 1.32769 1.15336 1.32732 0.86037 0.78115 0.79117 0.82465 1.19197 1.20796 1.20616 1.19398 0.82102 0.87375 0.83761 1.90455 1.50863 1.18631 1.86247 1.22375 1.01627 1.03246 0.91016 0.87240 1.22979 0.95472 0.98825 1.01598 1.21312 0.99957 0.93740 0.95428 1.21803 0.98243 1.00992 0.94373 1.22508 0.98948 0.83226 0.96249 1.87808 1.55189 1.25528 1.62357 1.22803 0.88886 1.01075 0.88956 1.21915 1.03546 0.92859 0.96092 0.93179 0.93938 0.92488 0.86970 0.93354 0.92324 0.88557 0.88894 0.91126 0.90806 0.93395 0.89370 0.89248 0.93656 0.87783 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.02 37.16 0.37 -2.64 16 2 C 0.10 2.11 5.31 -4.04 -0.02 2.09 16 3 N -0.44 -11.08 2.56 -114.81 -0.29 -11.37 16 4 C -0.31 -8.46 8.98 -14.94 -0.13 -8.60 16 5 H 0.09 2.68 7.70 -52.48 -0.40 2.28 16 6 C 0.03 0.91 4.92 -17.47 -0.09 0.82 16 7 N -0.87 -23.36 11.33 55.50 0.63 -22.74 16 8 Si 0.92 20.57 29.61 -169.99 -5.03 15.54 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 12 C 0.49 11.82 7.36 -10.98 -0.08 11.73 16 13 O -0.58 -15.56 12.97 5.54 0.07 -15.49 16 14 C -0.16 -3.06 4.51 -91.90 -0.41 -3.47 16 15 H 0.11 1.90 6.02 -51.93 -0.31 1.59 16 16 C -0.15 -2.49 9.62 -26.86 -0.26 -2.75 16 17 C -0.10 -1.72 2.02 -154.57 -0.31 -2.03 16 18 C -0.12 -1.56 5.92 -26.43 -0.16 -1.71 16 19 C 0.07 0.83 6.84 37.33 0.26 1.09 16 20 O -0.39 -5.83 10.69 -35.23 -0.38 -6.21 16 21 C 0.06 0.87 6.84 37.33 0.26 1.13 16 22 C -0.11 -1.90 4.34 -26.43 -0.11 -2.01 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.04 0.73 6.86 -51.93 -0.36 0.38 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.11 2.72 5.34 -51.93 -0.28 2.44 16 27 H 0.05 0.98 6.95 -51.93 -0.36 0.62 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 2.13 6.06 -51.93 -0.31 1.82 16 38 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 LS Contribution 301.86 15.07 4.55 4.55 Total: -1.00 -30.21 301.86 -6.95 -37.16 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.81 Total: 4.92 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.70 Total: -6.37 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.34 Total: -34.11 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.30 Total: -21.70 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.21 -6.95 -37.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368408708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.593 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds