Wall clock time and date at job start Sun Mar 29 2020 22:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30833 * 125.89804 * 2 1 4 4 N 1.40087 * 108.20801 * 180.25781 * 3 2 1 5 5 C 1.46493 * 126.04021 * 179.73851 * 4 3 2 6 6 C 1.53001 * 109.47072 * 269.97442 * 5 4 3 7 7 O 1.42897 * 109.47125 * 179.97438 * 6 5 4 8 8 C 1.34952 * 107.92032 * 359.71404 * 4 3 2 9 9 C 1.50694 * 126.12533 * 179.97438 * 8 4 3 10 10 C 1.35319 * 107.74476 * 0.02562 * 8 4 3 11 11 C 1.50704 * 126.03527 * 180.02562 * 10 8 4 12 12 N 1.46898 * 109.47041 * 89.99841 * 11 10 8 13 13 C 1.46906 * 110.99888 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47140 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99861 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00244 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99980 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47229 * 89.99965 * 18 16 14 20 20 H 1.48500 * 109.46876 * 209.99805 * 18 16 14 21 21 H 1.48499 * 109.47161 * 329.99530 * 18 16 14 22 22 H 1.09000 * 109.47385 * 270.21499 * 1 2 3 23 23 H 1.08996 * 109.47779 * 30.21702 * 1 2 3 24 24 H 1.09008 * 109.46922 * 150.21782 * 1 2 3 25 25 H 1.09006 * 109.47270 * 29.97180 * 5 4 3 26 26 H 1.08995 * 109.47317 * 149.97175 * 5 4 3 27 27 H 1.09006 * 109.46860 * 299.99989 * 6 5 4 28 28 H 1.08995 * 109.47267 * 59.99703 * 6 5 4 29 29 H 0.96705 * 114.00155 * 179.97438 * 7 6 5 30 30 H 1.09006 * 109.47174 * 270.02617 * 9 8 4 31 31 H 1.08996 * 109.47313 * 30.02051 * 9 8 4 32 32 H 1.08995 * 109.47447 * 150.02459 * 9 8 4 33 33 H 1.08997 * 109.46924 * 329.99752 * 11 10 8 34 34 H 1.08995 * 109.46962 * 209.99906 * 11 10 8 35 35 H 1.00901 * 111.00121 * 56.04537 * 12 11 10 36 36 H 1.09004 * 109.47040 * 299.99934 * 13 12 11 37 37 H 1.09000 * 109.47033 * 59.99886 * 13 12 11 38 38 H 0.96992 * 120.00038 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6088 0.6342 -0.0060 5 6 4.7898 1.5008 -0.0134 6 6 5.1941 1.7995 -1.4585 7 8 6.3458 2.6454 -1.4657 8 6 3.6142 -0.7154 -0.0032 9 6 4.8350 -1.5989 -0.0081 10 6 2.3271 -1.1330 0.0038 11 6 1.8599 -2.5658 0.0096 12 7 1.7145 -3.0278 1.3964 13 6 1.2589 -4.4237 1.4412 14 6 1.1222 -4.8616 2.8767 15 1 1.3513 -4.1721 3.6758 16 6 0.7056 -6.1428 3.1698 17 7 0.4271 -6.9826 2.1967 18 14 0.5355 -6.6855 4.9491 19 1 -0.8407 -6.3954 5.4257 20 1 0.7967 -8.1439 5.0489 21 1 1.5152 -5.9487 5.7872 22 1 -0.3634 0.0039 1.0276 23 1 -0.3634 0.8880 -0.5172 24 1 -0.3633 -0.8920 -0.5105 25 1 4.5587 2.4344 0.4996 26 1 5.6117 0.9993 0.4976 27 1 5.4252 0.8659 -1.9715 28 1 4.3723 2.3010 -1.9695 29 1 6.6590 2.8760 -2.3512 30 1 5.1238 -1.8137 -1.0370 31 1 5.6538 -1.0900 0.5003 32 1 4.6103 -2.5319 0.5085 33 1 2.5910 -3.1883 -0.5061 34 1 0.8988 -2.6365 -0.4997 35 1 1.0904 -2.4272 1.9141 36 1 0.2934 -4.5069 0.9420 37 1 1.9855 -5.0594 0.9354 38 1 0.1344 -7.8840 2.4029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309707023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:25 Heat of formation + Delta-G solvation = 14.959695 kcal Electronic energy + Delta-G solvation = -18440.974258 eV Core-core repulsion = 15512.749649 eV Total energy + Delta-G solvation = -2928.224609 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.22831 -37.44955 -35.45215 -34.07241 -32.69352 -31.66763 -30.16410 -28.18854 -26.71723 -26.14215 -23.88546 -22.51848 -21.30188 -19.40972 -19.27691 -17.90783 -16.44132 -15.88770 -15.61160 -15.51346 -14.77110 -14.46268 -14.07737 -13.67393 -13.25074 -13.12998 -13.00190 -12.92432 -12.42643 -12.33531 -12.26474 -11.85386 -11.69759 -11.53594 -11.27832 -11.11435 -10.72168 -10.61925 -10.43495 -10.20114 -9.87272 -9.15993 -8.89901 -8.45240 -8.06571 -7.17819 -6.00042 -4.01505 1.98179 2.41709 2.96090 3.33933 3.39908 3.44913 3.99321 4.39742 4.46711 4.72185 4.83866 4.87974 4.95941 5.19077 5.33612 5.35861 5.41861 5.46637 5.59362 5.61814 5.78715 5.79988 5.87590 6.07167 6.08439 6.29262 6.37260 6.59088 6.92162 7.12335 7.21287 7.30670 7.47870 7.83491 7.92717 8.17853 8.48434 8.68349 9.08510 9.63382 11.10988 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.032878 B = 0.004069 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.428298 B = 6880.204686 C = 7236.459657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.084 3.916 3 N -0.305 5.305 4 N -0.378 5.378 5 C 0.139 3.861 6 C 0.063 3.937 7 O -0.571 6.571 8 C 0.100 3.900 9 C -0.093 4.093 10 C -0.217 4.217 11 C 0.135 3.865 12 N -0.685 5.685 13 C 0.193 3.807 14 C -0.511 4.511 15 H 0.061 0.939 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.386 0.614 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.025 0.975 35 H 0.328 0.672 36 H -0.014 1.014 37 H 0.027 0.973 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.943 15.583 -8.935 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 N -0.127 5.127 4 N -0.162 5.162 5 C 0.016 3.984 6 C -0.017 4.017 7 O -0.376 6.376 8 C -0.026 4.026 9 C -0.152 4.152 10 C -0.228 4.228 11 C 0.005 3.995 12 N -0.315 5.315 13 C 0.067 3.933 14 C -0.550 4.550 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.097 0.903 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.234 0.766 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.145 0.855 36 H 0.004 0.996 37 H 0.045 0.955 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.657 16.527 -8.260 20.404 hybrid contribution -0.960 -1.088 0.031 1.451 sum 7.697 15.439 -8.228 19.113 Atomic orbital electron populations 1.20186 0.86885 1.02942 1.03193 1.22232 0.96739 0.90496 0.98813 1.77244 0.86055 1.22533 1.26884 1.48093 1.04821 1.03924 1.59360 1.21204 0.84779 0.95701 0.96668 1.22466 0.88151 0.94024 0.97010 1.86374 1.46653 1.70232 1.34334 1.20842 0.97201 0.83829 1.00743 1.20496 0.92486 0.99401 1.02767 1.19843 0.91023 0.96465 1.15450 1.20104 0.98384 0.88716 0.92320 1.60718 1.55412 1.05691 1.09686 1.19562 0.93507 0.83137 0.97136 1.21197 1.44124 0.97415 0.92261 0.92043 1.24982 0.95557 0.96630 0.97418 1.69963 1.46308 1.06154 1.31421 0.86506 0.78358 0.77650 0.84936 1.20757 1.21292 1.19809 0.90331 0.91309 0.90353 0.88302 0.88360 0.92979 0.92718 0.76598 0.90803 0.91590 0.88190 0.91483 0.95664 0.85530 0.99641 0.95479 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.26 36.01 0.37 -0.60 16 2 C 0.08 1.35 7.22 -82.41 -0.59 0.75 16 3 N -0.31 -4.96 12.58 33.67 0.42 -4.54 16 4 N -0.38 -5.42 3.61 -57.15 -0.21 -5.62 16 5 C 0.14 1.52 6.61 -4.04 -0.03 1.49 16 6 C 0.06 0.57 7.37 37.16 0.27 0.85 16 7 O -0.57 -4.72 13.66 -35.23 -0.48 -5.20 16 8 C 0.10 1.50 6.93 -82.26 -0.57 0.93 16 9 C -0.09 -1.14 9.72 36.00 0.35 -0.79 16 10 C -0.22 -3.62 5.61 -105.05 -0.59 -4.21 16 11 C 0.14 2.47 5.59 -4.97 -0.03 2.44 16 12 N -0.68 -14.86 6.48 -116.34 -0.75 -15.61 16 13 C 0.19 5.05 5.44 -4.97 -0.03 5.03 16 14 C -0.51 -14.54 9.32 -34.44 -0.32 -14.86 16 15 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 18 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 22 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 1.00 7.25 -51.92 -0.38 0.62 16 25 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.10 0.95 7.05 -51.93 -0.37 0.58 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.39 1.41 9.12 45.56 0.42 1.83 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.68 7.08 -51.93 -0.37 0.31 16 32 H 0.10 1.41 7.77 -51.93 -0.40 1.00 16 33 H 0.07 1.21 7.77 -51.93 -0.40 0.80 16 34 H 0.03 0.46 7.25 -51.93 -0.38 0.08 16 35 H 0.33 7.04 8.71 -39.29 -0.34 6.70 16 36 H -0.01 -0.39 8.14 -51.93 -0.42 -0.81 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -33.20 323.27 -6.84 -40.04 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.15 Total: 2.90 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.26 Total: -7.49 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.20 Total: -51.89 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.48 Total: -5.20 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.20 -6.84 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309707023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.000 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds