Wall clock time and date at job start Sun Mar 29 2020 23:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47280 * 2 1 4 4 C 1.53006 * 109.47221 * 119.99509 * 2 1 3 5 5 C 1.50700 * 109.47107 * 182.32308 * 4 2 1 6 6 H 1.07995 * 119.99964 * 5.28915 * 5 4 2 7 7 C 1.37886 * 119.99772 * 185.29690 * 5 4 2 8 8 N 1.31509 * 119.99719 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99939 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47261 * 89.99438 * 9 7 5 11 11 H 1.48498 * 109.47145 * 209.99757 * 9 7 5 12 12 H 1.48509 * 109.47235 * 329.99528 * 9 7 5 13 13 N 1.46897 * 109.47445 * 239.99805 * 2 1 3 14 14 C 1.46728 * 111.00358 * 71.43239 * 13 2 1 15 15 C 1.53676 * 109.81664 * 171.30099 * 14 13 2 16 16 N 1.46995 * 107.00871 * 50.58207 * 15 14 13 17 17 C 1.33215 * 128.93348 * 129.44247 * 16 15 14 18 18 O 1.21588 * 123.24098 * 12.31626 * 17 16 15 19 19 N 1.34251 * 113.51636 * 192.30568 * 17 16 15 20 20 C 1.47237 * 109.15602 * 355.04305 * 19 17 16 21 21 C 1.47989 * 122.05217 * 311.35083 * 16 15 14 22 22 H 1.09004 * 111.61099 * 288.05238 * 21 16 15 23 23 C 1.47093 * 110.99685 * 305.70733 * 13 2 1 24 24 H 1.08999 * 109.47740 * 300.00344 * 1 2 3 25 25 H 1.08997 * 109.47211 * 60.00691 * 1 2 3 26 26 H 1.09000 * 109.47087 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47109 * 302.32247 * 4 2 1 28 28 H 1.08999 * 109.46656 * 62.32310 * 4 2 1 29 29 H 0.97000 * 119.99803 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.41156 * 51.19409 * 14 13 2 31 31 H 1.08997 * 109.40903 * 291.40824 * 14 13 2 32 32 H 1.08997 * 109.94948 * 291.20883 * 15 14 13 33 33 H 1.09002 * 110.01504 * 169.99017 * 15 14 13 34 34 H 0.96995 * 125.41703 * 175.06290 * 19 17 16 35 35 H 1.08994 * 110.56532 * 238.91699 * 20 19 17 36 36 H 1.09003 * 110.68962 * 116.12930 * 20 19 17 37 37 H 1.08997 * 109.60906 * 309.50836 * 23 13 2 38 38 H 1.09004 * 109.60687 * 70.02607 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5459 -0.6715 1.2784 6 1 4.0819 -0.1032 0.5328 7 6 4.2393 -1.3517 2.2571 8 7 3.5865 -2.0434 3.1653 9 14 6.1059 -1.2907 2.2928 10 1 6.5479 -0.1434 3.1256 11 1 6.6315 -2.5536 2.8708 12 1 6.6224 -1.1266 0.9101 13 7 2.0197 -0.6925 -1.1994 14 6 1.7838 0.1114 -2.4040 15 6 2.4940 -0.5306 -3.6061 16 7 2.1034 -1.9475 -3.6298 17 6 1.6273 -2.6677 -4.6444 18 8 1.6439 -2.2857 -5.7985 19 7 1.1275 -3.8561 -4.2696 20 6 1.3714 -4.0507 -2.8307 21 6 2.1625 -2.7989 -2.4208 22 1 3.1907 -3.0319 -2.1438 23 6 1.4397 -2.0403 -1.3035 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6431 -0.2319 2.1388 28 1 1.7110 -1.7601 1.2288 29 1 4.0742 -2.5216 3.8540 30 1 2.1717 1.1182 -2.2493 31 1 0.7130 0.1630 -2.6010 32 1 3.5743 -0.4447 -3.4891 33 1 2.1801 -0.0429 -4.5290 34 1 0.6777 -4.4862 -4.8539 35 1 1.9631 -4.9502 -2.6609 36 1 0.4298 -4.1045 -2.2843 37 1 1.5699 -2.5685 -0.3590 38 1 0.3784 -1.9645 -1.5401 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351473708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:56 Heat of formation + Delta-G solvation = -25.145936 kcal Electronic energy + Delta-G solvation = -19840.322842 eV Core-core repulsion = 16910.359122 eV Total energy + Delta-G solvation = -2929.963719 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.153 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.28711 -39.52550 -37.37394 -35.73030 -34.48969 -32.16702 -31.99850 -29.19218 -28.49810 -26.19103 -25.18509 -23.76017 -22.63269 -21.27968 -20.05804 -18.55179 -18.26934 -17.75092 -16.72817 -16.57404 -16.41262 -15.98467 -15.45861 -15.29611 -15.02145 -14.60787 -14.25348 -14.10613 -13.68685 -13.63153 -13.25678 -13.02231 -12.84952 -12.62799 -12.47187 -12.37293 -12.07360 -11.97595 -11.72184 -11.33332 -11.05053 -10.94970 -10.41620 -10.35069 -9.56420 -8.88771 -8.04133 -6.07114 1.45646 1.47663 1.57525 1.62830 2.04417 2.52151 2.97605 2.99804 3.31964 3.64575 3.76856 3.90566 4.14517 4.23868 4.29953 4.34620 4.49314 4.58455 4.61690 4.66007 4.77133 4.83435 4.92972 4.95042 5.06479 5.14943 5.21711 5.29677 5.56258 5.71914 5.77418 5.95785 6.20390 6.32506 6.41833 6.50311 6.56479 7.06350 7.56866 7.58311 9.07541 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.023702 B = 0.006612 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.031121 B = 4233.441408 C = 4552.840358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.099 3.901 3 H 0.067 0.933 4 C 0.035 3.965 5 C -0.492 4.492 6 H 0.057 0.943 7 C 0.001 3.999 8 N -0.938 5.938 9 Si 0.948 3.052 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.268 1.268 13 N -0.533 5.533 14 C 0.048 3.952 15 C 0.158 3.842 16 N -0.630 5.630 17 C 0.695 3.305 18 O -0.641 6.641 19 N -0.732 5.732 20 C 0.104 3.896 21 C 0.120 3.880 22 H 0.094 0.906 23 C 0.062 3.938 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.052 0.948 27 H -0.010 1.010 28 H 0.007 0.993 29 H 0.257 0.743 30 H 0.095 0.905 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.437 0.563 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -2.065 -10.237 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.009 4.009 3 H 0.086 0.914 4 C -0.002 4.002 5 C -0.530 4.530 6 H 0.075 0.925 7 C -0.195 4.195 8 N -0.580 5.580 9 Si 0.775 3.225 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.193 1.193 13 N -0.257 5.257 14 C -0.081 4.081 15 C 0.036 3.964 16 N -0.367 5.367 17 C 0.396 3.604 18 O -0.524 6.524 19 N -0.394 5.394 20 C -0.021 4.021 21 C 0.016 3.984 22 H 0.112 0.888 23 C -0.066 4.066 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.008 0.992 28 H 0.025 0.975 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.280 0.720 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.403 -1.857 -10.637 12.074 hybrid contribution 0.028 -0.218 0.279 0.355 sum -5.375 -2.074 -10.358 11.852 Atomic orbital electron populations 1.22382 0.97326 1.01701 1.01765 1.21610 0.91838 0.97292 0.90182 0.91438 1.19077 0.95094 0.94817 0.91193 1.21435 0.92893 1.28287 1.10410 0.92500 1.25710 1.02072 0.95889 0.95860 1.70068 1.36682 1.34274 1.16991 0.85703 0.81632 0.76970 0.78192 1.20749 1.21523 1.19284 1.61429 1.60087 1.02310 1.01831 1.22497 0.98288 0.97754 0.89539 1.21625 0.99694 0.76791 0.98284 1.47482 1.67426 1.11581 1.10253 1.15927 0.78499 0.82011 0.84001 1.90882 1.66418 1.75572 1.19510 1.45166 1.62795 1.19921 1.11559 1.22433 1.01507 0.97568 0.80602 1.22441 1.00878 0.89758 0.85348 0.88797 1.22399 0.95378 0.90426 0.98427 0.92375 0.92207 0.92853 0.99188 0.97465 0.93398 0.88713 0.94685 0.90729 0.89006 0.71985 0.87162 0.88183 0.90145 0.93973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 8.50 71.98 0.61 -4.59 16 2 C 0.10 3.59 2.28 44.92 0.10 3.69 16 3 H 0.07 2.49 7.91 -2.39 -0.02 2.47 16 4 C 0.04 1.67 4.34 29.85 0.13 1.80 16 5 C -0.49 -25.90 8.77 25.60 0.22 -25.68 16 6 H 0.06 2.98 7.75 -2.91 -0.02 2.96 16 7 C 0.00 0.05 5.46 84.66 0.46 0.51 16 8 N -0.94 -54.43 13.29 21.45 0.28 -54.15 16 9 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 13 N -0.53 -17.70 4.11 -869.19 -3.57 -21.27 16 14 C 0.05 1.31 5.28 86.56 0.46 1.77 16 15 C 0.16 4.32 7.12 86.51 0.62 4.94 16 16 N -0.63 -18.23 3.03 -810.95 -2.45 -20.68 16 17 C 0.70 21.39 8.63 179.70 1.55 22.94 16 18 O -0.64 -24.72 17.74 -3.99 -0.07 -24.79 16 19 N -0.73 -16.10 6.40 -477.89 -3.06 -19.16 16 20 C 0.10 1.96 7.69 86.46 0.66 2.62 16 21 C 0.12 3.18 4.11 44.98 0.18 3.37 16 22 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 23 C 0.06 1.87 3.85 86.33 0.33 2.20 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 1.57 6.93 -2.39 -0.02 1.55 16 26 H 0.05 1.59 6.56 -2.39 -0.02 1.57 16 27 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H 0.01 0.36 6.27 -2.39 -0.01 0.34 16 29 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.09 2.39 7.93 -2.39 -0.02 2.38 16 31 H 0.04 0.93 7.05 -2.39 -0.02 0.92 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.09 2.40 7.97 -2.39 -0.02 2.38 16 34 H 0.44 7.49 8.96 -92.71 -0.83 6.66 16 35 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 1.59 7.65 -2.39 -0.02 1.57 16 37 H 0.08 2.79 6.06 -2.39 -0.01 2.78 16 38 H 0.04 1.18 6.69 -2.38 -0.02 1.16 16 Total: -1.00 -67.65 298.18 -1.28 -68.93 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.23 Total: 12.06 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 5.34 Total: 13.57 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -8.80 Total: -115.26 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.07 Total: -24.79 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -67.65 -1.28 -68.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351473708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.780 kcal (2) G-P(sol) polarization free energy of solvation -67.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds