Wall clock time and date at job start Sun Mar 29 2020 23:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99638 * 2 1 4 4 H 1.48507 * 109.46868 * 269.99952 * 3 2 1 5 5 H 1.48496 * 109.47646 * 29.99716 * 3 2 1 6 6 H 1.48504 * 109.47249 * 150.00211 * 3 2 1 7 7 C 1.37877 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00167 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99522 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46683 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.46810 * 111.00023 * 65.54564 * 11 10 9 13 13 C 1.53280 * 109.72161 * 185.59380 * 12 11 10 14 14 C 1.53004 * 109.04042 * 301.07810 * 13 12 11 15 15 H 1.09001 * 109.48704 * 298.13676 * 14 13 12 16 16 C 1.52907 * 109.98011 * 177.78730 * 14 13 12 17 17 C 1.53064 * 109.26125 * 179.77071 * 16 14 13 18 18 H 1.09002 * 109.41461 * 299.77785 * 17 16 14 19 19 O 1.42908 * 109.44018 * 179.87032 * 17 16 14 20 20 C 1.52958 * 109.64836 * 59.81864 * 17 16 14 21 21 C 1.53066 * 109.65372 * 300.43898 * 20 17 16 22 22 C 1.52913 * 109.29978 * 59.78450 * 21 20 17 23 23 H 1.09006 * 109.46018 * 59.40775 * 22 21 20 24 24 C 1.46928 * 111.00036 * 189.99914 * 11 10 9 25 25 H 0.97001 * 120.00708 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47187 * 59.99967 * 9 7 2 27 27 H 1.08996 * 109.46900 * 299.99448 * 9 7 2 28 28 H 1.09000 * 109.47244 * 60.00114 * 10 9 7 29 29 H 1.09002 * 109.47442 * 300.00073 * 10 9 7 30 30 H 1.08998 * 109.43338 * 305.65313 * 12 11 10 31 31 H 1.09002 * 109.43332 * 65.56202 * 12 11 10 32 32 H 1.09002 * 109.55662 * 181.21298 * 13 12 11 33 33 H 1.09004 * 109.56509 * 60.95414 * 13 12 11 34 34 H 1.09002 * 109.50551 * 59.83491 * 16 14 13 35 35 H 1.09000 * 109.54016 * 299.73217 * 16 14 13 36 36 H 0.96703 * 113.99697 * 179.81847 * 19 17 16 37 37 H 1.09000 * 109.43938 * 180.38425 * 20 17 16 38 38 H 1.08999 * 109.41370 * 60.47931 * 20 17 16 39 39 H 1.09002 * 109.50630 * 179.74460 * 21 20 17 40 40 H 1.09003 * 109.50740 * 299.82872 * 21 20 17 41 41 H 1.09001 * 109.49428 * 54.29098 * 24 11 10 42 42 H 1.09006 * 109.49132 * 294.21023 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5110 -4.9342 0.0012 12 6 0.7562 -5.1065 -1.2462 13 6 -0.1063 -6.3706 -1.1584 14 6 0.8010 -7.5777 -0.9117 15 1 1.4883 -7.6933 -1.7498 16 6 -0.0430 -8.8444 -0.7656 17 6 0.8803 -10.0413 -0.5254 18 1 1.5573 -10.1525 -1.3725 19 8 0.0952 -11.2271 -0.3853 20 6 1.6937 -9.8156 0.7502 21 6 2.5295 -8.5411 0.6091 22 6 1.5994 -7.3501 0.3751 23 1 0.9123 -7.2552 1.2160 24 6 2.4177 -6.0655 0.2393 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.8721 -3.6042 0.8905 29 1 2.8722 -3.6042 -0.8894 30 1 0.1140 -4.2401 -1.4041 31 1 1.4511 -5.1998 -2.0807 32 1 -0.6490 -6.5077 -2.0937 33 1 -0.8147 -6.2728 -0.3357 34 1 -0.6182 -9.0057 -1.6774 35 1 -0.7231 -8.7340 0.0790 36 1 0.6157 -12.0278 -0.2330 37 1 2.3547 -10.6666 0.9143 38 1 1.0166 -9.7134 1.5983 39 1 3.1045 -8.3801 1.5210 40 1 3.2094 -8.6435 -0.2367 41 1 2.9803 -5.8939 1.1571 42 1 3.1083 -6.1608 -0.5987 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451720708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:25 Heat of formation + Delta-G solvation = -81.789261 kcal Electronic energy + Delta-G solvation = -19338.426013 eV Core-core repulsion = 16509.546399 eV Total energy + Delta-G solvation = -2828.879615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.00220 -37.58704 -35.37393 -33.19412 -32.57302 -30.85829 -29.07262 -28.50608 -24.87004 -23.41265 -22.73579 -21.85466 -20.57628 -19.79326 -19.44666 -17.32421 -16.42029 -15.43742 -15.15466 -14.78894 -14.52641 -14.19672 -14.09278 -14.04355 -13.57175 -13.09255 -12.73334 -12.45257 -12.18936 -12.01016 -11.77637 -11.46527 -11.31809 -11.13930 -10.99956 -10.88239 -10.73811 -10.58832 -10.45402 -10.17092 -10.04775 -9.84656 -9.68727 -9.25602 -9.09105 -8.31049 -7.65261 -5.97863 -4.00205 3.32850 3.39111 3.42387 3.95489 4.35825 4.51032 4.54101 4.62711 4.89511 4.96039 5.07680 5.15367 5.27114 5.36219 5.37994 5.41696 5.60899 5.64107 5.73587 5.77908 5.84821 5.88223 5.89264 6.01841 6.08397 6.10471 6.14592 6.24447 6.34863 6.38735 6.49612 6.57828 6.65244 7.00258 7.43605 7.56100 7.64180 7.83911 7.93405 8.11284 8.45810 9.07132 9.63267 11.13472 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.055404 B = 0.003866 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.258770 B = 7240.772308 C = 7562.440606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.539 5.539 12 C 0.055 3.945 13 C -0.109 4.109 14 C -0.079 4.079 15 H 0.065 0.935 16 C -0.105 4.105 17 C 0.104 3.896 18 H 0.052 0.948 19 O -0.570 6.570 20 C -0.148 4.148 21 C -0.111 4.111 22 C -0.081 4.081 23 H 0.080 0.920 24 C 0.062 3.938 25 H 0.260 0.740 26 H 0.017 0.983 27 H 0.025 0.975 28 H 0.060 0.940 29 H 0.018 0.982 30 H 0.087 0.913 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.374 0.626 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 -20.368 -1.107 20.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.063 4.063 11 N -0.263 5.263 12 C -0.073 4.073 13 C -0.147 4.147 14 C -0.098 4.098 15 H 0.083 0.917 16 C -0.142 4.142 17 C 0.046 3.954 18 H 0.070 0.930 19 O -0.376 6.376 20 C -0.186 4.186 21 C -0.149 4.149 22 C -0.100 4.100 23 H 0.098 0.902 24 C -0.067 4.067 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.105 0.895 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.221 0.779 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.154 -19.792 -0.814 19.925 hybrid contribution 1.598 0.562 -0.581 1.791 sum 3.752 -19.230 -1.395 19.642 Atomic orbital electron populations 1.69970 1.06004 1.26548 1.50699 1.24992 0.94829 0.99150 0.95347 0.86604 0.79853 0.83547 0.78038 1.20735 1.21203 1.19904 1.21203 0.92967 0.91115 1.50798 0.92846 1.19103 0.93986 0.90091 0.97774 1.22309 0.96709 0.88435 0.98807 1.61934 1.27280 1.02292 1.34836 1.22122 0.96763 0.98276 0.90096 1.21649 0.97874 0.93409 1.01801 1.21135 0.97002 0.93879 0.97746 0.91677 1.21512 0.97826 0.92197 1.02706 1.21863 0.92268 0.85317 0.95969 0.93044 1.86532 1.37969 1.17607 1.95457 1.22238 0.99114 0.98209 0.99061 1.21488 0.97700 0.93778 1.01935 1.21214 0.97119 0.93407 0.98246 0.90177 1.22045 0.93854 0.90664 1.00093 0.93012 0.96482 0.95710 0.92191 0.96396 0.89461 0.95862 0.91847 0.90973 0.91457 0.91069 0.77922 0.92088 0.91049 0.91484 0.92082 0.91194 0.95778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.73 4.90 -27.88 -0.14 0.59 16 10 C 0.06 1.38 4.90 -3.82 -0.02 1.36 16 11 N -0.54 -9.91 4.65 -234.55 -1.09 -11.00 16 12 C 0.06 0.95 5.29 -3.73 -0.02 0.93 16 13 C -0.11 -1.52 5.43 -26.58 -0.14 -1.66 16 14 C -0.08 -0.95 2.00 -90.60 -0.18 -1.13 16 15 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.10 -1.17 4.90 -26.75 -0.13 -1.30 16 17 C 0.10 1.02 3.47 -26.72 -0.09 0.92 16 18 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 19 O -0.57 -5.65 13.32 -35.23 -0.47 -6.11 16 20 C -0.15 -1.33 5.54 -26.72 -0.15 -1.48 16 21 C -0.11 -1.10 5.25 -26.74 -0.14 -1.24 16 22 C -0.08 -1.01 2.10 -90.64 -0.19 -1.20 16 23 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 24 C 0.06 0.92 4.79 -3.85 -0.02 0.90 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.47 6.42 -51.93 -0.33 0.13 16 27 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.27 7.99 -51.93 -0.41 0.86 16 29 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 16 30 H 0.09 1.69 6.21 -51.93 -0.32 1.37 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.37 2.06 9.08 45.56 0.41 2.47 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.02 8.02 -51.93 -0.42 0.61 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 321.12 15.07 4.84 4.84 Total: -1.00 -30.98 321.12 -9.59 -40.57 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.96 Total: -1.80 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -1.63 Total: -16.95 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.35 Total: -37.31 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.47 Total: -6.11 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.98 -9.59 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451720708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.218 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds