Wall clock time and date at job start Sun Mar 29 2020 23:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47075 * 2 1 4 4 C 1.50703 * 109.46866 * 240.00580 * 2 1 3 5 5 N 1.29942 * 126.28686 * 59.68628 * 4 2 1 6 6 O 1.21304 * 110.24785 * 179.84209 * 5 4 2 7 7 C 1.33642 * 109.81011 * 0.42761 * 6 5 4 8 8 C 1.50707 * 126.55295 * 179.71454 * 7 6 5 9 9 H 1.08997 * 109.47210 * 165.02196 * 8 7 6 10 10 C 1.52999 * 109.46978 * 285.02516 * 8 7 6 11 11 N 1.46904 * 109.46643 * 45.02396 * 8 7 6 12 12 C 1.46904 * 110.99643 * 155.00230 * 11 8 7 13 13 H 1.09001 * 109.47271 * 35.00097 * 12 11 8 14 14 C 1.53003 * 109.46948 * 274.99868 * 12 11 8 15 15 C 1.50699 * 109.47094 * 154.99960 * 12 11 8 16 16 H 1.08000 * 120.00047 * 5.45774 * 15 12 11 17 17 C 1.37875 * 120.00161 * 185.46281 * 15 12 11 18 18 N 1.31514 * 120.00104 * 9.54094 * 17 15 12 19 19 Si 1.86801 * 120.00119 * 189.54317 * 17 15 12 20 20 H 1.48501 * 109.46767 * 84.99242 * 19 17 15 21 21 H 1.48499 * 109.47226 * 204.99134 * 19 17 15 22 22 H 1.48499 * 109.46958 * 324.99485 * 19 17 15 23 23 N 1.31131 * 106.90140 * 359.73741 * 7 6 5 24 24 H 1.09008 * 109.46661 * 299.99607 * 1 2 3 25 25 H 1.08992 * 109.47246 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47331 * 59.99422 * 1 2 3 27 27 H 1.08999 * 109.47331 * 120.00577 * 2 1 3 28 28 H 1.09008 * 109.47055 * 60.00634 * 3 2 1 29 29 H 1.09005 * 109.46888 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.47548 * 300.00203 * 3 2 1 31 31 H 1.09003 * 109.47178 * 179.97438 * 10 8 7 32 32 H 1.09000 * 109.47174 * 299.99624 * 10 8 7 33 33 H 1.08998 * 109.46921 * 60.00004 * 10 8 7 34 34 H 1.00904 * 111.00167 * 278.95318 * 11 8 7 35 35 H 1.09004 * 109.46667 * 183.74311 * 14 12 11 36 36 H 1.08999 * 109.46745 * 303.74123 * 14 12 11 37 37 H 1.09003 * 109.46837 * 63.74618 * 14 12 11 38 38 H 0.96995 * 120.00295 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 7 1.7902 -0.3777 -2.4632 6 8 2.3408 -1.1478 -3.2217 7 6 2.9990 -2.0782 -2.5237 8 6 3.8054 -3.2198 -3.0873 9 1 4.4315 -3.6446 -2.3026 10 6 2.8597 -4.2962 -3.6239 11 7 4.6556 -2.7265 -4.1790 12 6 5.8347 -3.5846 -4.3567 13 1 5.5640 -4.6207 -4.1533 14 6 6.9355 -3.1456 -3.3890 15 6 6.3342 -3.4648 -5.7735 16 1 5.8824 -2.7514 -6.4468 17 6 7.3679 -4.2659 -6.2101 18 7 7.7927 -5.2587 -5.4594 19 14 8.1651 -3.9412 -7.8679 20 1 9.2198 -2.9069 -7.7158 21 1 8.7725 -5.1960 -8.3795 22 1 7.1368 -3.4623 -8.8263 23 7 2.8087 -1.8083 -1.2546 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8901 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 3.4429 -5.1217 -4.0319 32 1 2.2288 -4.6621 -2.8138 33 1 2.2336 -3.8713 -4.4085 34 1 4.1322 -2.6487 -5.0381 35 1 7.8328 -3.7384 -3.5664 36 1 7.1595 -2.0908 -3.5480 37 1 6.5983 -3.2950 -2.3632 38 1 8.5196 -5.8225 -5.7667 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602864310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:04 Heat of formation + Delta-G solvation = 49.088945 kcal Electronic energy + Delta-G solvation = -18835.774700 eV Core-core repulsion = 15909.030047 eV Total energy + Delta-G solvation = -2926.744653 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 253.153 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.24253 -37.08416 -36.75143 -34.44202 -33.25351 -31.37815 -29.98373 -27.39231 -27.21062 -25.29373 -24.52861 -24.19085 -22.19641 -20.20866 -19.35200 -17.73105 -17.34888 -16.62755 -15.32475 -15.01201 -14.82222 -14.24991 -14.04931 -13.86035 -13.55390 -12.72216 -12.49314 -12.43804 -12.35480 -12.04351 -11.73222 -11.66897 -11.63871 -11.20147 -11.17004 -11.03121 -10.89461 -10.79070 -10.63420 -10.55122 -10.32873 -10.09018 -9.56501 -8.99642 -8.53678 -7.58320 -6.13448 -4.15978 1.48397 2.49246 3.20109 3.28021 3.34579 3.37159 3.70191 4.20234 4.37079 4.75156 4.88388 4.93835 5.15928 5.21122 5.30887 5.33762 5.40206 5.50360 5.60010 5.64323 5.70012 5.91659 5.99262 6.01287 6.07148 6.09552 6.29231 6.37449 6.71551 7.00000 7.01892 7.24002 7.69751 7.71105 8.02961 8.13619 8.45535 8.50317 8.92181 9.49370 10.95666 Molecular weight = 253.15amu Principal moments of inertia in cm(-1) A = 0.042160 B = 0.004298 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.972317 B = 6512.757775 C = 6584.681277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.002 4.002 3 C -0.144 4.144 4 C 0.168 3.832 5 N -0.392 5.392 6 O 0.081 5.919 7 C 0.221 3.779 8 C 0.171 3.829 9 H 0.118 0.882 10 C -0.177 4.177 11 N -0.681 5.681 12 C 0.213 3.787 13 H 0.018 0.982 14 C -0.123 4.123 15 C -0.524 4.524 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.887 5.887 19 Si 0.895 3.105 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.274 1.274 23 N -0.495 5.495 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.344 0.656 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.010 0.990 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.633 6.152 8.797 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 C -0.203 4.203 4 C -0.105 4.105 5 N -0.101 5.101 6 O 0.024 5.976 7 C 0.000 4.000 8 C 0.058 3.942 9 H 0.136 0.864 10 C -0.237 4.237 11 N -0.314 5.314 12 C 0.106 3.894 13 H 0.036 0.964 14 C -0.182 4.182 15 C -0.563 4.563 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.525 5.525 19 Si 0.722 3.278 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.199 1.199 23 N -0.229 5.229 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.163 0.837 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.029 0.971 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.592 7.078 9.392 16.513 hybrid contribution 0.309 -0.731 -1.365 1.579 sum -11.282 6.347 8.027 15.232 Atomic orbital electron populations 1.21834 0.93190 1.02411 1.02710 1.19488 0.96118 0.95327 0.91252 1.21839 1.01652 0.94094 1.02667 1.25717 0.97056 0.93217 0.94556 1.74523 1.18282 1.14571 1.02743 1.85278 1.47401 1.29840 1.35059 1.29205 0.92564 0.92782 0.85419 1.20086 0.91854 0.84790 0.97497 0.86446 1.22506 1.00019 0.99657 1.01486 1.60699 1.09214 1.53691 1.07804 1.19187 0.84827 0.89932 0.95434 0.96401 1.21711 1.00904 1.00133 0.95415 1.21149 1.18402 1.20821 0.95879 0.91943 1.24892 0.96910 0.94323 0.97481 1.69953 1.27756 1.16658 1.38085 0.86570 0.79807 0.77603 0.83779 1.20487 1.21360 1.19884 1.71883 1.18077 1.14588 1.18376 0.91320 0.92398 0.91910 0.88301 0.91333 0.92197 0.91894 0.89737 0.92284 0.91866 0.83718 0.91484 0.94564 0.97084 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.18 37.16 0.34 -1.04 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -1.48 9.18 37.16 0.34 -1.14 16 4 C 0.17 2.63 6.72 -156.37 -1.05 1.58 16 5 N -0.39 -6.64 12.16 30.90 0.38 -6.26 16 6 O 0.08 1.42 11.31 18.10 0.20 1.62 16 7 C 0.22 3.83 7.35 -13.05 -0.10 3.74 16 8 C 0.17 2.94 2.94 -68.86 -0.20 2.74 16 9 H 0.12 2.09 7.14 -51.93 -0.37 1.72 16 10 C -0.18 -2.60 9.13 37.16 0.34 -2.26 16 11 N -0.68 -13.61 6.03 -102.16 -0.62 -14.23 16 12 C 0.21 5.00 2.28 -68.86 -0.16 4.85 16 13 H 0.02 0.46 7.06 -51.93 -0.37 0.09 16 14 C -0.12 -2.89 9.26 37.16 0.34 -2.55 16 15 C -0.52 -13.62 8.48 -34.44 -0.29 -13.91 16 16 H 0.06 1.61 7.69 -52.49 -0.40 1.21 16 17 C 0.07 1.77 5.17 -17.82 -0.09 1.68 16 18 N -0.89 -24.36 12.16 55.43 0.67 -23.69 16 19 Si 0.89 20.63 29.55 -169.99 -5.02 15.61 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 N -0.50 -8.56 11.55 -9.87 -0.11 -8.68 16 24 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.32 7.43 -51.93 -0.39 0.93 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.34 6.66 8.00 -39.29 -0.31 6.35 16 35 H 0.07 1.70 6.83 -51.93 -0.35 1.35 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.01 0.22 7.47 -51.93 -0.39 -0.17 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 318.49 15.07 4.80 4.80 Total: -1.00 -28.12 318.49 -6.48 -34.60 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.95 Total: 2.88 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -0.84 Total: -6.65 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.32 Total: -52.86 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.20 Total: 1.62 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.12 -6.48 -34.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602864310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.689 kcal (2) G-P(sol) polarization free energy of solvation -28.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds