Wall clock time and date at job start Sun Mar 29 2020 23:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47022 * 2 1 4 4 C 1.50695 * 110.43971 * 293.89103 * 3 2 1 5 5 O 1.21286 * 120.00016 * 109.26890 * 4 3 2 6 6 N 1.34774 * 120.00208 * 289.27915 * 4 3 2 7 7 C 1.46506 * 119.99988 * 3.56849 * 6 4 3 8 8 C 1.46499 * 120.00318 * 183.56620 * 6 4 3 9 9 H 1.09008 * 109.46901 * 359.97438 * 8 6 4 10 10 C 1.52997 * 109.47359 * 119.99529 * 8 6 4 11 11 C 1.50697 * 109.47312 * 239.99995 * 8 6 4 12 12 H 1.07997 * 120.00304 * 0.02562 * 11 8 6 13 13 C 1.37879 * 119.99740 * 179.97438 * 11 8 6 14 14 N 1.31518 * 119.99573 * 179.97438 * 13 11 8 15 15 Si 1.86796 * 120.00359 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47349 * 89.99317 * 15 13 11 17 17 H 1.48499 * 109.47339 * 209.99839 * 15 13 11 18 18 H 1.48502 * 109.47059 * 329.99441 * 15 13 11 19 19 C 1.54890 * 110.48411 * 56.43747 * 3 2 1 20 20 C 1.55233 * 102.58930 * 156.67514 * 19 3 2 21 21 C 1.54272 * 104.23135 * 322.08319 * 20 19 3 22 22 C 1.53874 * 106.59796 * 23.60962 * 21 20 19 23 23 H 1.08999 * 109.47271 * 304.91201 * 1 2 3 24 24 H 1.08995 * 109.47563 * 64.91340 * 1 2 3 25 25 H 1.09004 * 109.47496 * 184.91491 * 1 2 3 26 26 H 1.09002 * 109.46737 * 240.00250 * 2 1 3 27 27 H 1.08997 * 109.47194 * 120.00798 * 2 1 3 28 28 H 1.08996 * 109.46746 * 264.08903 * 7 6 4 29 29 H 1.08998 * 109.46977 * 24.08295 * 7 6 4 30 30 H 1.08999 * 109.47243 * 144.08850 * 7 6 4 31 31 H 1.09007 * 109.47204 * 300.00797 * 10 8 6 32 32 H 1.09008 * 109.46762 * 60.00347 * 10 8 6 33 33 H 1.08995 * 109.47325 * 179.97438 * 10 8 6 34 34 H 0.97007 * 119.99859 * 180.02562 * 14 13 11 35 35 H 1.09004 * 110.75620 * 275.06551 * 19 3 2 36 36 H 1.09001 * 110.75946 * 38.43548 * 19 3 2 37 37 H 1.08997 * 110.47066 * 203.39282 * 20 19 3 38 38 H 1.08997 * 110.47374 * 80.77208 * 20 19 3 39 39 H 1.09001 * 110.03047 * 264.32915 * 21 20 19 40 40 H 1.08998 * 110.03342 * 142.89574 * 21 20 19 41 41 H 1.09006 * 110.03370 * 240.71815 * 22 21 20 42 42 H 1.08998 * 110.03260 * 119.28784 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6762 2.1293 -1.2911 5 8 0.8295 2.9977 -1.2984 6 7 2.2914 1.7784 -2.4377 7 6 3.2569 0.6765 -2.4434 8 6 1.9948 2.4987 -3.6784 9 1 1.2589 3.2779 -3.4791 10 6 3.2775 3.1342 -4.2184 11 6 1.4430 1.5364 -4.6984 12 1 1.3246 0.4926 -4.4475 13 6 1.0882 1.9887 -5.9516 14 7 0.6071 1.1487 -6.8419 15 14 1.2922 3.7940 -6.3855 16 1 2.6434 4.0154 -6.9603 17 1 0.2611 4.1837 -7.3805 18 1 1.1343 4.6184 -5.1604 19 6 1.4643 2.2209 1.2091 20 6 2.4980 3.3633 1.3991 21 6 3.8581 2.6966 1.1069 22 6 3.5669 1.4753 0.2173 23 1 -0.3634 0.5881 0.8427 24 1 -0.3634 0.4357 -0.9307 25 1 -0.3634 -1.0239 0.0880 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 4.2659 1.0771 -2.3458 29 1 3.0494 0.0073 -1.6084 30 1 3.1738 0.1254 -3.3801 31 1 3.6767 3.8302 -3.4805 32 1 4.0131 2.3548 -4.4178 33 1 3.0569 3.6697 -5.1417 34 1 0.3578 1.4668 -7.7238 35 1 0.4786 2.6234 0.9755 36 1 1.4236 1.5854 2.0937 37 1 2.4686 3.7376 2.4224 38 1 2.3088 4.1703 0.6913 39 1 4.3252 2.3770 2.0385 40 1 4.5107 3.3940 0.5816 41 1 3.8926 0.5630 0.7173 42 1 4.0781 1.5800 -0.7396 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094901808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:33 Heat of formation + Delta-G solvation = -57.000385 kcal Electronic energy + Delta-G solvation = -20630.966027 eV Core-core repulsion = 17803.161339 eV Total energy + Delta-G solvation = -2827.804688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.78237 -38.44406 -37.19544 -34.88972 -34.11978 -32.32277 -29.57745 -28.70272 -27.69464 -27.19242 -24.27399 -23.80178 -21.47453 -21.24183 -19.50513 -18.74798 -17.59785 -17.18434 -16.67812 -16.44835 -15.82856 -15.68950 -15.01903 -14.85998 -14.35548 -14.21986 -14.15303 -14.05418 -13.63282 -13.47947 -13.15079 -13.07248 -12.80922 -12.64436 -12.36342 -12.08441 -12.03027 -11.91327 -11.80133 -11.60882 -11.47798 -11.39633 -11.24702 -11.19845 -10.82070 -10.32994 -9.34931 -8.37778 -6.41472 1.21774 1.31625 1.40319 1.84149 2.24537 2.32884 2.97536 3.49764 3.61926 3.73320 4.02999 4.21168 4.28791 4.38451 4.44595 4.45935 4.54793 4.56558 4.60225 4.65344 4.72151 4.74068 4.81663 4.94438 4.96620 4.99415 5.07234 5.09530 5.12182 5.16944 5.27459 5.30274 5.33593 5.36425 5.45347 5.49129 5.56872 5.75159 6.19982 6.60217 6.80267 7.20908 7.45146 8.78331 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.027752 B = 0.007271 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.708363 B = 3850.119640 C = 4125.201994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.079 4.079 4 C 0.514 3.486 5 O -0.602 6.602 6 N -0.595 5.595 7 C 0.066 3.934 8 C 0.231 3.769 9 H 0.024 0.976 10 C -0.151 4.151 11 C -0.524 4.524 12 H 0.045 0.955 13 C 0.023 3.977 14 N -0.939 5.939 15 Si 0.940 3.060 16 H -0.252 1.252 17 H -0.294 1.294 18 H -0.267 1.267 19 C -0.099 4.099 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.126 4.126 23 H 0.064 0.936 24 H 0.011 0.989 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.268 0.732 35 H 0.049 0.951 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.031 0.969 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.108 0.892 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.336 -1.333 17.541 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.082 4.082 4 C 0.304 3.696 5 O -0.484 6.484 6 N -0.324 5.324 7 C -0.076 4.076 8 C 0.127 3.873 9 H 0.042 0.958 10 C -0.209 4.209 11 C -0.562 4.562 12 H 0.063 0.937 13 C -0.176 4.176 14 N -0.578 5.578 15 Si 0.768 3.232 16 H -0.177 1.177 17 H -0.222 1.222 18 H -0.192 1.192 19 C -0.136 4.136 20 C -0.165 4.165 21 C -0.156 4.156 22 C -0.164 4.164 23 H 0.083 0.917 24 H 0.030 0.970 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.131 0.869 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.050 0.950 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.126 0.874 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.868 -0.922 17.328 19.487 hybrid contribution -0.649 0.877 -1.275 1.678 sum 8.218 -0.045 16.054 18.035 Atomic orbital electron populations 1.21800 0.96602 1.02183 1.00516 1.21835 0.95669 0.93053 1.04340 1.21692 0.98719 0.96534 0.91217 1.21235 0.79907 0.82371 0.86078 1.90576 1.34832 1.35768 1.87215 1.47846 1.42455 1.34296 1.07847 1.22342 0.91966 0.89383 1.03860 1.18900 0.93769 0.92043 0.82554 0.95765 1.22284 0.98892 1.00358 0.99392 1.21369 1.42268 0.95639 0.96952 0.93656 1.25635 0.94239 1.01598 0.96139 1.70003 1.44851 1.36753 1.06218 0.85988 0.78175 0.81007 0.78058 1.17737 1.22175 1.19170 1.22496 0.98218 0.96775 0.96144 1.22413 0.95356 0.97361 1.01354 1.22135 0.96501 0.96538 1.00468 1.22674 0.91457 1.00697 1.01540 0.91671 0.96971 0.90867 0.91027 0.86869 0.90656 0.87811 0.92548 0.92778 0.91067 0.94107 0.92262 0.93251 0.87862 0.89704 0.94986 0.88914 0.92655 0.87388 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 9.49 71.98 0.68 -3.58 16 2 C -0.11 -2.64 4.62 30.59 0.14 -2.50 16 3 C -0.08 -2.15 0.27 -51.85 -0.01 -2.17 16 4 C 0.51 20.80 5.45 87.66 0.48 21.28 16 5 O -0.60 -30.09 15.01 -3.05 -0.05 -30.14 16 6 N -0.59 -24.71 2.70 -826.80 -2.23 -26.94 16 7 C 0.07 2.09 7.60 127.77 0.97 3.06 16 8 C 0.23 11.53 2.23 44.24 0.10 11.63 16 9 H 0.02 1.39 5.96 -2.38 -0.01 1.38 16 10 C -0.15 -6.46 8.67 71.98 0.62 -5.84 16 11 C -0.52 -30.24 8.62 25.60 0.22 -30.02 16 12 H 0.05 2.84 7.48 -2.91 -0.02 2.82 16 13 C 0.02 1.33 5.45 84.65 0.46 1.79 16 14 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 15 Si 0.94 46.39 24.37 68.60 1.67 48.06 16 16 H -0.25 -11.34 6.87 99.48 0.68 -10.66 16 17 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 18 H -0.27 -13.18 6.53 99.48 0.65 -12.53 16 19 C -0.10 -2.51 4.30 32.01 0.14 -2.38 16 20 C -0.13 -3.05 6.61 31.79 0.21 -2.84 16 21 C -0.12 -2.32 6.80 31.32 0.21 -2.10 16 22 C -0.13 -2.59 4.87 31.32 0.15 -2.44 16 23 H 0.06 1.67 6.80 -2.39 -0.02 1.65 16 24 H 0.01 0.42 7.63 -2.39 -0.02 0.40 16 25 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.07 1.79 5.32 -2.39 -0.01 1.77 16 27 H 0.11 1.75 8.00 -2.39 -0.02 1.73 16 28 H 0.08 1.95 6.85 -2.39 -0.02 1.94 16 29 H 0.10 2.62 3.40 -2.39 -0.01 2.61 16 30 H 0.06 2.06 6.96 -2.39 -0.02 2.04 16 31 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.07 2.78 7.67 -2.38 -0.02 2.76 16 33 H 0.04 1.80 3.27 -2.39 -0.01 1.79 16 34 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 35 H 0.05 1.58 7.00 -2.38 -0.02 1.56 16 36 H 0.10 1.91 8.06 -2.39 -0.02 1.89 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.11 1.48 7.74 -2.38 -0.02 1.46 16 42 H 0.07 1.67 4.54 -2.39 -0.01 1.66 16 Total: -1.00 -74.25 305.37 4.99 -69.26 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.92 Total: 14.13 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 4.38 Total: -16.11 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -1.93 Total: -85.19 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.05 Total: -30.14 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.67 Total: 48.06 kcal Total: -74.25 4.99 -69.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.259 kcal (2) G-P(sol) polarization free energy of solvation -74.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds