Wall clock time and date at job start Sun Mar 29 2020 23:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99540 * 2 1 4 4 H 1.48500 * 109.46846 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47205 * 299.99786 * 3 2 1 6 6 H 1.48504 * 109.47197 * 60.00428 * 3 2 1 7 7 C 1.37873 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47160 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47216 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46835 * 185.86471 * 11 10 9 13 13 C 1.46903 * 110.99672 * 158.13867 * 12 11 10 14 14 C 1.53004 * 109.47204 * 202.22856 * 13 12 11 15 15 H 1.09003 * 110.74767 * 47.97721 * 14 13 12 16 16 C 1.55306 * 110.84807 * 171.67433 * 14 13 12 17 17 C 1.54942 * 100.93878 * 152.32463 * 16 14 13 18 18 O 1.43643 * 105.14012 * 323.55377 * 17 16 14 19 19 C 1.43240 * 109.96994 * 24.42836 * 18 17 16 20 20 C 1.46897 * 111.00004 * 282.08723 * 12 11 10 21 21 C 1.53003 * 117.51965 * 5.62555 * 20 12 11 22 22 C 1.53004 * 117.49624 * 74.25614 * 20 12 11 23 23 H 0.97000 * 120.00455 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46630 * 60.00593 * 9 7 2 25 25 H 1.08998 * 109.47729 * 300.00497 * 9 7 2 26 26 H 1.09007 * 109.46914 * 60.00707 * 10 9 7 27 27 H 1.09001 * 109.47614 * 300.00554 * 10 9 7 28 28 H 1.09001 * 109.46617 * 65.86695 * 11 10 9 29 29 H 1.08992 * 109.47240 * 305.86167 * 11 10 9 30 30 H 1.08997 * 109.47237 * 322.23174 * 13 12 11 31 31 H 1.09007 * 109.47386 * 82.23047 * 13 12 11 32 32 H 1.09002 * 111.12518 * 270.24194 * 16 14 13 33 33 H 1.08998 * 111.12631 * 34.40285 * 16 14 13 34 34 H 1.09002 * 110.30758 * 204.63976 * 17 16 14 35 35 H 1.09001 * 110.30956 * 82.47063 * 17 16 14 36 36 H 1.08994 * 109.82906 * 238.77727 * 19 18 17 37 37 H 1.08998 * 109.90287 * 117.84292 * 19 18 17 38 38 H 1.09001 * 115.55245 * 219.91845 * 20 12 11 39 39 H 1.08998 * 117.49601 * 214.96847 * 21 20 12 40 40 H 1.08996 * 117.49854 * 359.97438 * 21 20 12 41 41 H 1.08998 * 117.49722 * 359.96940 * 22 20 12 42 42 H 1.08999 * 117.50307 * 144.97250 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1938 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 7 2.4289 -6.0999 0.1403 13 6 1.7579 -7.3011 0.6551 14 6 2.7916 -8.2246 1.3029 15 1 3.4379 -7.6661 1.9800 16 6 2.0962 -9.4014 2.0403 17 6 3.1941 -10.4914 1.9553 18 8 3.8061 -10.3079 0.6688 19 6 3.6236 -8.9572 0.2284 20 6 3.1057 -6.3799 -1.1330 21 6 2.8326 -5.4317 -2.3023 22 6 4.1862 -5.3976 -1.5897 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5566 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8720 -3.6042 0.8896 27 1 2.8722 -3.6042 -0.8904 28 1 0.9353 -5.0913 -0.9393 29 1 0.7772 -5.0010 0.8314 30 1 1.0137 -7.0117 1.3971 31 1 1.2679 -7.8238 -0.1663 32 1 1.8794 -9.1423 3.0766 33 1 1.1919 -9.7129 1.5177 34 1 2.7481 -11.4837 2.0239 35 1 3.9293 -10.3506 2.7476 36 1 3.0908 -8.9471 -0.7224 37 1 4.5920 -8.4699 0.1148 38 1 3.2542 -7.4347 -1.3645 39 1 2.8014 -5.8626 -3.3030 40 1 2.1503 -4.6000 -2.1270 41 1 4.3944 -4.5433 -0.9455 42 1 5.0456 -5.8060 -2.1213 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160968616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:55 Heat of formation + Delta-G solvation = -19.455953 kcal Electronic energy + Delta-G solvation = -19156.404903 eV Core-core repulsion = 16330.228264 eV Total energy + Delta-G solvation = -2826.176640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.93346 -38.60556 -34.44248 -33.92664 -32.27953 -31.06810 -29.39985 -26.60407 -24.98251 -23.22827 -22.31604 -22.06493 -20.83151 -20.10468 -19.76451 -17.00220 -16.31841 -16.27000 -16.03012 -15.28663 -14.83916 -14.41657 -14.05809 -13.66054 -13.28751 -13.10721 -12.92751 -12.52297 -12.14029 -11.96683 -11.68639 -11.55070 -11.22278 -11.04474 -10.93874 -10.88505 -10.79225 -10.48509 -10.40060 -10.32609 -10.05509 -9.64951 -9.52128 -9.23576 -9.03197 -8.33022 -7.91966 -5.98510 -4.00262 3.32047 3.39523 3.44075 3.70841 3.80789 4.21675 4.35220 4.48068 4.64425 4.75184 4.95777 5.07047 5.12224 5.20345 5.26898 5.33814 5.37581 5.43727 5.52126 5.55452 5.63914 5.66609 5.76503 5.82831 5.90553 5.92713 6.04357 6.14371 6.27299 6.33974 6.48885 6.70870 6.80302 6.84778 7.18371 7.36192 7.37711 7.70627 7.84916 8.02245 8.45827 9.07234 9.63865 11.12966 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.037275 B = 0.003975 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.986390 B = 7043.039026 C = 7361.768210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.115 4.115 11 C 0.050 3.950 12 N -0.507 5.507 13 C 0.065 3.935 14 C -0.114 4.114 15 H 0.096 0.904 16 C -0.153 4.153 17 C 0.052 3.948 18 O -0.390 6.390 19 C 0.054 3.946 20 C 0.006 3.994 21 C -0.217 4.217 22 C -0.172 4.172 23 H 0.259 0.741 24 H 0.013 0.987 25 H 0.014 0.986 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -18.866 1.142 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.153 4.153 11 C -0.077 4.077 12 N -0.229 5.229 13 C -0.063 4.063 14 C -0.133 4.133 15 H 0.114 0.886 16 C -0.191 4.191 17 C -0.025 4.025 18 O -0.310 6.310 19 C -0.022 4.022 20 C -0.103 4.103 21 C -0.255 4.255 22 C -0.210 4.210 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.785 -18.767 1.387 19.417 hybrid contribution -0.332 0.986 -0.463 1.139 sum 4.453 -17.781 0.924 18.353 Atomic orbital electron populations 1.69974 1.06053 1.26407 1.51224 1.25024 0.94828 0.99236 0.95427 0.86562 0.80189 0.83887 0.77535 1.19710 1.21060 1.21054 1.21279 0.93066 0.91004 1.50056 0.92651 1.19081 0.94054 0.91525 0.96948 1.21950 0.99404 0.92465 1.01455 1.22504 0.93779 0.91177 1.00239 1.61948 1.30522 1.05599 1.24818 1.22090 0.94894 0.90807 0.98509 1.22757 0.97543 0.95685 0.97351 0.88561 1.23308 0.98898 0.95085 1.01825 1.23337 0.94071 0.99092 0.85987 1.88390 1.78380 1.29190 1.35019 1.23455 0.99953 0.81695 0.97104 1.22884 1.02676 0.95739 0.89040 1.23695 1.01179 1.04220 0.96429 1.23206 0.91985 1.02516 1.03243 0.93130 0.96912 0.96800 0.92694 0.92068 0.94202 0.91435 0.90327 0.94316 0.89714 0.90396 0.90003 0.92229 0.91429 0.91008 0.87045 0.89545 0.86426 0.87457 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.12 -2.36 4.12 -26.73 -0.11 -2.47 16 11 C 0.05 0.84 4.56 -3.82 -0.02 0.83 16 12 N -0.51 -7.33 4.54 -226.64 -1.03 -8.36 16 13 C 0.07 0.77 4.62 -3.82 -0.02 0.76 16 14 C -0.11 -1.20 3.18 -88.67 -0.28 -1.49 16 15 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.15 -1.31 6.62 -24.48 -0.16 -1.48 16 17 C 0.05 0.47 7.78 38.18 0.30 0.76 16 18 O -0.39 -4.69 11.36 -35.23 -0.40 -5.09 16 19 C 0.05 0.60 5.74 37.88 0.22 0.81 16 20 C 0.01 0.08 5.36 -67.71 -0.36 -0.29 16 21 C -0.22 -3.11 8.84 -26.73 -0.24 -3.35 16 22 C -0.17 -2.40 9.66 -26.73 -0.26 -2.66 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 1.24 4.14 -51.93 -0.21 1.02 16 28 H 0.04 0.68 6.37 -51.93 -0.33 0.35 16 29 H 0.07 1.15 7.52 -51.93 -0.39 0.76 16 30 H 0.08 0.92 7.52 -51.93 -0.39 0.53 16 31 H 0.04 0.44 7.65 -51.93 -0.40 0.05 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.73 5.85 -51.93 -0.30 0.43 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.11 1.32 4.71 -51.93 -0.24 1.08 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.12 1.98 4.60 -51.93 -0.24 1.74 16 41 H 0.11 1.71 6.35 -51.93 -0.33 1.38 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 320.28 15.07 4.83 4.83 Total: -1.00 -30.34 320.28 -9.40 -39.73 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.03 Total: 0.07 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -1.48 Total: -21.62 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: -0.29 Total: -34.70 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.40 Total: -5.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.34 -9.40 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160968616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.276 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds