Wall clock time and date at job start Sun Mar 29 2020 23:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99540 * 2 1 4 4 H 1.48500 * 109.46846 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47205 * 299.99786 * 3 2 1 6 6 H 1.48504 * 109.47197 * 60.00428 * 3 2 1 7 7 C 1.37873 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47160 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47216 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46835 * 185.86471 * 11 10 9 13 13 C 1.46903 * 110.99672 * 158.13867 * 12 11 10 14 14 C 1.53004 * 109.47204 * 202.22856 * 13 12 11 15 15 H 1.09003 * 110.74767 * 47.97721 * 14 13 12 16 16 C 1.55306 * 110.84807 * 171.67433 * 14 13 12 17 17 C 1.54942 * 100.93878 * 152.32463 * 16 14 13 18 18 O 1.43643 * 105.14012 * 323.55377 * 17 16 14 19 19 C 1.43240 * 109.96994 * 24.42836 * 18 17 16 20 20 C 1.46897 * 111.00004 * 282.08723 * 12 11 10 21 21 C 1.53003 * 117.51965 * 5.62555 * 20 12 11 22 22 C 1.53004 * 117.49624 * 74.25614 * 20 12 11 23 23 H 0.97000 * 120.00455 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46630 * 60.00593 * 9 7 2 25 25 H 1.08998 * 109.47729 * 300.00497 * 9 7 2 26 26 H 1.09007 * 109.46914 * 60.00707 * 10 9 7 27 27 H 1.09001 * 109.47614 * 300.00554 * 10 9 7 28 28 H 1.09001 * 109.46617 * 65.86695 * 11 10 9 29 29 H 1.08992 * 109.47240 * 305.86167 * 11 10 9 30 30 H 1.08997 * 109.47237 * 322.23174 * 13 12 11 31 31 H 1.09007 * 109.47386 * 82.23047 * 13 12 11 32 32 H 1.09002 * 111.12518 * 270.24194 * 16 14 13 33 33 H 1.08998 * 111.12631 * 34.40285 * 16 14 13 34 34 H 1.09002 * 110.30758 * 204.63976 * 17 16 14 35 35 H 1.09001 * 110.30956 * 82.47063 * 17 16 14 36 36 H 1.08994 * 109.82906 * 238.77727 * 19 18 17 37 37 H 1.08998 * 109.90287 * 117.84292 * 19 18 17 38 38 H 1.09001 * 115.55245 * 219.91845 * 20 12 11 39 39 H 1.08998 * 117.49601 * 214.96847 * 21 20 12 40 40 H 1.08996 * 117.49854 * 359.97438 * 21 20 12 41 41 H 1.08998 * 117.49722 * 359.96940 * 22 20 12 42 42 H 1.08999 * 117.50307 * 144.97250 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1938 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 7 2.4289 -6.0999 0.1403 13 6 1.7579 -7.3011 0.6551 14 6 2.7916 -8.2246 1.3029 15 1 3.4379 -7.6661 1.9800 16 6 2.0962 -9.4014 2.0403 17 6 3.1941 -10.4914 1.9553 18 8 3.8061 -10.3079 0.6688 19 6 3.6236 -8.9572 0.2284 20 6 3.1057 -6.3799 -1.1330 21 6 2.8326 -5.4317 -2.3023 22 6 4.1862 -5.3976 -1.5897 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5566 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8720 -3.6042 0.8896 27 1 2.8722 -3.6042 -0.8904 28 1 0.9353 -5.0913 -0.9393 29 1 0.7772 -5.0010 0.8314 30 1 1.0137 -7.0117 1.3971 31 1 1.2679 -7.8238 -0.1663 32 1 1.8794 -9.1423 3.0766 33 1 1.1919 -9.7129 1.5177 34 1 2.7481 -11.4837 2.0239 35 1 3.9293 -10.3506 2.7476 36 1 3.0908 -8.9471 -0.7224 37 1 4.5920 -8.4699 0.1148 38 1 3.2542 -7.4347 -1.3645 39 1 2.8014 -5.8626 -3.3030 40 1 2.1503 -4.6000 -2.1270 41 1 4.3944 -4.5433 -0.9455 42 1 5.0456 -5.8060 -2.1213 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160968616.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:55 Heat of formation + Delta-G solvation = -38.087793 kcal Electronic energy + Delta-G solvation = -19157.212841 eV Core-core repulsion = 16330.228264 eV Total energy + Delta-G solvation = -2826.984577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88751 -39.66284 -35.85065 -35.45868 -33.87580 -32.39749 -30.38752 -28.32398 -26.05684 -24.92457 -23.30776 -23.07734 -22.10787 -21.37162 -21.02421 -18.43684 -18.01410 -17.34625 -16.92663 -16.62046 -16.25563 -15.69831 -15.12649 -14.97063 -14.52700 -14.19620 -14.16742 -14.01298 -13.65527 -13.31390 -13.18444 -12.76273 -12.60083 -12.43408 -12.29862 -12.12259 -12.00313 -11.84034 -11.68914 -11.60386 -11.34632 -11.24679 -11.08582 -10.91439 -10.54655 -10.45096 -9.08911 -8.20346 -6.30865 1.39166 1.39391 1.52942 2.40226 2.66842 2.95140 3.12849 3.14013 3.55292 3.76642 3.94549 3.98893 4.07994 4.11797 4.22244 4.31495 4.36212 4.39209 4.44275 4.70269 4.73040 4.74631 4.77089 4.82429 4.91318 4.93379 4.94830 4.97839 5.03291 5.09209 5.17423 5.28965 5.32590 5.36572 5.55017 5.75097 5.87727 6.03712 6.09039 6.24753 6.29210 6.86023 7.38338 8.91680 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.037275 B = 0.003975 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.986390 B = 7043.039026 C = 7361.768210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.539 4.539 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.097 4.097 11 C 0.062 3.938 12 N -0.515 5.515 13 C 0.066 3.934 14 C -0.110 4.110 15 H 0.086 0.914 16 C -0.145 4.145 17 C 0.046 3.954 18 O -0.411 6.411 19 C 0.055 3.945 20 C 0.013 3.987 21 C -0.223 4.223 22 C -0.175 4.175 23 H 0.263 0.737 24 H -0.010 1.010 25 H -0.011 1.011 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.385 -19.887 1.177 20.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.135 4.135 11 C -0.065 4.065 12 N -0.237 5.237 13 C -0.061 4.061 14 C -0.129 4.129 15 H 0.105 0.895 16 C -0.183 4.183 17 C -0.030 4.030 18 O -0.331 6.331 19 C -0.021 4.021 20 C -0.096 4.096 21 C -0.262 4.262 22 C -0.212 4.212 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.007 0.993 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.152 0.848 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.694 -19.807 1.429 20.659 hybrid contribution -0.625 1.267 -0.463 1.487 sum 5.069 -18.540 0.967 19.245 Atomic orbital electron populations 1.70097 1.07731 1.27651 1.51901 1.25957 0.95762 1.03265 0.94786 0.85430 0.79082 0.78902 0.77838 1.18718 1.20282 1.20310 1.21691 0.93395 0.92427 1.50195 0.92530 1.18969 0.94387 0.93163 0.94553 1.21691 0.98120 0.92634 1.01067 1.22197 0.93587 0.90609 1.00117 1.61843 1.30121 1.06098 1.25598 1.22154 0.95298 0.89841 0.98843 1.22664 0.97159 0.95871 0.97212 0.89538 1.23295 0.98786 0.93818 1.02448 1.23530 0.94320 1.00118 0.85023 1.88367 1.78936 1.29438 1.36370 1.23426 0.99800 0.81576 0.97312 1.23028 1.01815 0.96645 0.88126 1.23633 1.00859 1.03806 0.97871 1.23216 0.92783 1.02085 1.03152 0.92794 0.99161 0.99257 0.93639 0.91736 0.94331 0.91649 0.90122 0.93385 0.88353 0.89721 0.88373 0.91637 0.91113 0.91488 0.84811 0.87499 0.89306 0.89819 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.10 -4.10 4.12 30.59 0.13 -3.98 16 11 C 0.06 2.13 4.56 86.30 0.39 2.53 16 12 N -0.51 -14.42 4.54 -870.96 -3.95 -18.38 16 13 C 0.07 1.46 4.62 86.30 0.40 1.86 16 14 C -0.11 -2.11 3.18 -9.53 -0.03 -2.14 16 15 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 16 C -0.15 -2.14 6.62 32.05 0.21 -1.92 16 17 C 0.05 0.72 7.78 72.65 0.56 1.29 16 18 O -0.41 -9.07 11.36 -148.98 -1.69 -10.76 16 19 C 0.05 1.10 5.74 72.45 0.42 1.52 16 20 C 0.01 0.32 5.36 44.92 0.24 0.56 16 21 C -0.22 -6.20 8.84 30.60 0.27 -5.93 16 22 C -0.17 -4.69 9.66 30.60 0.30 -4.39 16 23 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 24 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H 0.04 1.97 8.14 -2.38 -0.02 1.96 16 27 H 0.06 2.67 4.14 -2.39 -0.01 2.66 16 28 H 0.04 1.34 6.37 -2.39 -0.02 1.32 16 29 H 0.07 2.25 7.52 -2.39 -0.02 2.24 16 30 H 0.08 1.76 7.52 -2.39 -0.02 1.74 16 31 H 0.05 0.99 7.65 -2.38 -0.02 0.97 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.15 8.04 -2.39 -0.02 1.13 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.36 5.85 -2.39 -0.01 1.35 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.13 2.83 4.71 -2.39 -0.01 2.82 16 39 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.09 3.03 4.60 -2.39 -0.01 3.01 16 41 H 0.08 2.67 6.35 -2.39 -0.02 2.65 16 42 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -65.47 320.28 1.38 -64.09 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.98 Total: 14.82 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 3.73 Total: -39.63 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -3.67 Total: -75.43 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -1.69 Total: -10.76 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.47 1.38 -64.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160968616.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.006 kcal (2) G-P(sol) polarization free energy of solvation -65.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds