Wall clock time and date at job start Mon Mar 30 2020 00:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47341 * 2 1 4 4 C 1.53004 * 109.47238 * 120.00173 * 2 1 3 5 5 C 1.53001 * 115.55814 * 34.30610 * 4 2 1 6 6 C 1.53003 * 117.49547 * 248.62526 * 4 2 1 7 7 C 1.52996 * 117.50197 * 180.02562 * 4 2 1 8 8 H 1.08997 * 117.51737 * 0.02562 * 7 4 2 9 9 C 1.50696 * 117.49862 * 214.97615 * 7 4 2 10 10 O 1.21281 * 119.99992 * 359.97438 * 9 7 4 11 11 N 1.34778 * 119.99834 * 179.97438 * 9 7 4 12 12 C 1.46506 * 119.99948 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.46954 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46929 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47154 * 89.99418 * 19 17 15 21 21 H 1.48493 * 109.47010 * 209.99942 * 19 17 15 22 22 H 1.48502 * 109.46736 * 329.99638 * 19 17 15 23 23 H 1.08994 * 109.47282 * 300.00022 * 1 2 3 24 24 H 1.09004 * 109.46969 * 60.00356 * 1 2 3 25 25 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47157 * 239.99463 * 2 1 3 27 27 H 1.08998 * 109.47260 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46798 * 299.99748 * 3 2 1 29 29 H 1.08994 * 109.46950 * 59.99775 * 3 2 1 30 30 H 1.09007 * 109.46706 * 205.68928 * 5 4 2 31 31 H 1.08993 * 109.47520 * 325.69374 * 5 4 2 32 32 H 1.09004 * 109.46997 * 85.69783 * 5 4 2 33 33 H 1.09003 * 117.49455 * 145.01841 * 6 4 2 34 34 H 1.08995 * 117.51775 * 359.97438 * 6 4 2 35 35 H 0.96998 * 120.00150 * 0.02562 * 11 9 7 36 36 H 1.09000 * 109.46635 * 60.00517 * 12 11 9 37 37 H 1.08994 * 109.47340 * 300.00676 * 12 11 9 38 38 H 1.09000 * 109.47441 * 60.00504 * 13 12 11 39 39 H 1.09002 * 109.47087 * 299.99950 * 13 12 11 40 40 H 1.09001 * 109.47671 * 60.00109 * 14 13 12 41 41 H 1.08998 * 109.47454 * 300.00107 * 14 13 12 42 42 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.1851 -1.8962 1.7283 6 6 2.7419 0.1227 2.3151 7 6 3.5550 -0.8276 1.4346 8 1 4.1887 -0.3835 0.6670 9 6 4.0913 -2.0820 2.0748 10 8 3.3292 -2.9594 2.4216 11 7 5.4179 -2.2289 2.2619 12 6 5.9393 -3.4481 2.8848 13 6 7.4639 -3.3606 2.9794 14 6 8.0084 -4.6342 3.6293 15 6 9.5102 -4.5484 3.7219 16 1 10.0247 -3.6731 3.3536 17 6 10.2267 -5.5848 4.2815 18 7 9.5997 -6.6482 4.7348 19 14 12.0881 -5.4782 4.3969 20 1 12.4688 -4.8479 5.6865 21 1 12.6677 -6.8433 4.3229 22 1 12.6075 -4.6583 3.2729 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.3351 -2.0422 2.7981 31 1 0.1339 -1.6836 1.5345 32 1 1.4776 -2.8001 1.1938 33 1 2.5946 -0.1593 3.3577 34 1 2.8408 1.1916 2.1265 35 1 6.0275 -1.5270 1.9849 36 1 5.6614 -4.3119 2.2810 37 1 5.5190 -3.5535 3.8849 38 1 7.7415 -2.4968 3.5834 39 1 7.8845 -3.2551 1.9793 40 1 7.7309 -5.4978 3.0250 41 1 7.5878 -4.7403 4.6293 42 1 10.1037 -7.3774 5.1289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186206953.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:28 Heat of formation + Delta-G solvation = -43.112980 kcal Electronic energy + Delta-G solvation = -18443.975005 eV Core-core repulsion = 15616.772520 eV Total energy + Delta-G solvation = -2827.202485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38291 -38.09021 -35.34504 -33.33715 -33.23040 -31.19969 -29.39150 -27.18731 -26.32023 -24.27282 -23.21859 -22.38467 -20.68772 -19.69084 -18.41951 -17.07436 -16.45736 -15.80357 -15.35092 -15.09942 -14.72420 -14.45039 -13.90753 -13.86607 -13.32941 -13.14746 -12.78774 -12.57830 -12.29352 -11.88691 -11.84856 -11.77021 -11.69942 -11.59494 -11.23589 -10.90871 -10.86738 -10.72084 -10.59257 -10.17678 -9.87175 -9.84966 -9.65045 -9.23486 -9.07853 -8.71629 -8.37505 -6.02063 -4.05236 2.66367 3.30550 3.34949 3.37209 3.40384 3.72170 4.43409 4.46641 4.50597 4.66562 4.74608 4.88765 5.05357 5.13414 5.33680 5.34975 5.36250 5.47186 5.61788 5.62921 5.69302 5.76611 5.79148 5.81734 5.86785 5.94989 5.99281 6.10071 6.16086 6.17414 6.46579 6.58708 6.60768 6.86176 7.01466 7.63348 7.76079 7.78390 7.96762 8.37533 8.48472 9.01488 9.58983 11.09281 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.055695 B = 0.003049 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.615957 B = 9182.403419 C = 9502.520825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.152 4.152 4 C -0.085 4.085 5 C -0.108 4.108 6 C -0.152 4.152 7 C -0.187 4.187 8 H 0.119 0.881 9 C 0.536 3.464 10 O -0.540 6.540 11 N -0.724 5.724 12 C 0.117 3.883 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.398 0.602 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.999 16.112 -9.005 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C -0.209 4.209 4 C -0.085 4.085 5 C -0.165 4.165 6 C -0.190 4.190 7 C -0.208 4.208 8 H 0.137 0.863 9 C 0.322 3.678 10 O -0.417 6.417 11 N -0.374 5.374 12 C -0.006 4.006 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.501 15.276 -8.659 24.096 hybrid contribution 1.629 0.299 -0.019 1.657 sum -14.872 15.575 -8.678 23.218 Atomic orbital electron populations 1.21894 0.94721 1.02161 1.01548 1.20621 0.95972 0.95319 0.96022 1.21991 1.01071 0.95950 1.01856 1.21583 0.90909 0.99045 0.97006 1.21463 0.97197 0.95764 1.02080 1.23298 1.01893 0.97114 0.96659 1.22371 0.95955 0.98143 1.04328 0.86307 1.19662 0.82380 0.87242 0.78556 1.90692 1.56813 1.43039 1.51206 1.46189 1.06960 1.21829 1.62422 1.21625 0.95754 0.85629 0.97546 1.21883 0.90886 1.02033 1.01050 1.19029 0.95580 0.90938 0.95838 1.21208 0.91979 1.03150 1.39734 0.92654 1.25033 0.98583 0.95424 0.95448 1.69968 1.35597 1.07220 1.40529 0.86576 0.85605 0.77293 0.78419 1.20651 1.21188 1.19889 0.92478 0.92837 0.91909 0.90773 0.92539 0.92617 0.92129 0.91752 0.92719 0.91462 0.88464 0.87478 0.76887 0.91855 0.91892 0.92761 0.92767 0.96300 0.96291 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.20 37.16 0.30 -0.76 16 2 C -0.06 -0.50 3.15 -90.62 -0.29 -0.78 16 3 C -0.15 -1.02 7.79 37.16 0.29 -0.73 16 4 C -0.08 -0.87 2.47 -154.51 -0.38 -1.25 16 5 C -0.11 -1.29 7.73 37.16 0.29 -1.00 16 6 C -0.15 -1.47 8.91 -26.75 -0.24 -1.71 16 7 C -0.19 -2.07 5.55 -91.80 -0.51 -2.58 16 8 H 0.12 1.09 7.61 -51.93 -0.39 0.69 16 9 C 0.54 8.04 7.59 -10.99 -0.08 7.95 16 10 O -0.54 -9.91 13.11 5.56 0.07 -9.83 16 11 N -0.72 -10.66 5.56 -60.30 -0.33 -10.99 16 12 C 0.12 2.11 5.67 -4.04 -0.02 2.08 16 13 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.47 6.45 -51.93 -0.33 0.14 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.37 7.07 -51.93 -0.37 0.01 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.39 6.98 -51.93 -0.36 0.03 16 30 H 0.06 0.87 7.01 -51.93 -0.36 0.51 16 31 H 0.05 0.53 5.59 -51.93 -0.29 0.24 16 32 H 0.07 0.93 7.26 -51.93 -0.38 0.55 16 33 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16 34 H 0.11 0.82 5.85 -51.93 -0.30 0.51 16 35 H 0.40 4.77 8.47 -40.82 -0.35 4.43 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -31.53 332.49 -8.19 -39.73 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.33 Total: 0.11 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -1.33 Total: -14.31 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.40 Total: -37.26 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.53 -8.19 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186206953.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.385 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds