Wall clock time and date at job start Mon Mar 30 2020 00:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47177 * 2 1 4 4 C 1.53006 * 109.46735 * 120.00378 * 2 1 3 5 5 C 1.52992 * 115.55912 * 326.25702 * 4 2 1 6 6 C 1.52995 * 117.49819 * 111.95213 * 4 2 1 7 7 C 1.53000 * 117.49417 * 180.57385 * 4 2 1 8 8 H 1.08996 * 117.49622 * 144.99231 * 7 4 2 9 9 C 1.50696 * 117.50128 * 359.97438 * 7 4 2 10 10 O 1.21286 * 120.00252 * 322.40531 * 9 7 4 11 11 N 1.34782 * 120.00219 * 142.40411 * 9 7 4 12 12 C 1.46501 * 120.00069 * 179.97438 * 11 9 7 13 13 C 1.52994 * 109.46959 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47108 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47288 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99838 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00101 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99969 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99998 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47488 * 89.99823 * 19 17 15 21 21 H 1.48501 * 109.47327 * 209.99460 * 19 17 15 22 22 H 1.48499 * 109.47357 * 329.99743 * 19 17 15 23 23 H 1.09002 * 109.47230 * 300.00104 * 1 2 3 24 24 H 1.09001 * 109.47064 * 59.99933 * 1 2 3 25 25 H 1.09003 * 109.47787 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46782 * 239.99691 * 2 1 3 27 27 H 1.08997 * 109.46952 * 185.95590 * 3 2 1 28 28 H 1.08998 * 109.47104 * 305.94851 * 3 2 1 29 29 H 1.08992 * 109.47031 * 65.95693 * 3 2 1 30 30 H 1.08999 * 109.47312 * 274.31520 * 5 4 2 31 31 H 1.08998 * 109.47469 * 34.31695 * 5 4 2 32 32 H 1.09000 * 109.46663 * 154.31662 * 5 4 2 33 33 H 1.09004 * 117.50388 * 359.97438 * 6 4 2 34 34 H 1.08998 * 117.49654 * 214.97174 * 6 4 2 35 35 H 0.97001 * 119.99648 * 0.02562 * 11 9 7 36 36 H 1.09004 * 109.46831 * 60.00578 * 12 11 9 37 37 H 1.09001 * 109.47410 * 300.00273 * 12 11 9 38 38 H 1.09004 * 109.46827 * 60.00637 * 13 12 11 39 39 H 1.08998 * 109.47797 * 300.00156 * 13 12 11 40 40 H 1.08994 * 109.47413 * 60.00397 * 14 13 12 41 41 H 1.09001 * 109.47182 * 300.00286 * 14 13 12 42 42 H 0.96996 * 119.99484 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 1.1778 -0.5599 2.5028 6 6 2.7536 -2.0599 1.0502 7 6 3.5548 -0.8165 1.4411 8 1 3.9373 -0.7636 2.4604 9 6 4.4305 -0.1930 0.3849 10 8 4.1116 -0.2585 -0.7834 11 7 5.5681 0.4375 0.7386 12 6 6.4196 1.0431 -0.2882 13 6 7.6374 1.6893 0.3752 14 6 8.5264 2.3223 -0.6971 15 6 9.7262 2.9583 -0.0437 16 1 9.8432 2.9149 1.0291 17 6 10.6751 3.5946 -0.8155 18 7 11.7220 4.1501 -0.2452 19 14 10.4731 3.6690 -2.6710 20 1 9.7144 4.8918 -3.0378 21 1 11.8114 3.7055 -3.3136 22 1 9.7329 2.4689 -3.1369 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 3.1247 1.4442 -0.1066 28 1 1.5923 1.9861 -0.8319 29 1 1.7664 1.9245 0.9384 30 1 1.4603 0.3555 3.0227 31 1 0.1274 -0.5060 2.2170 32 1 1.3316 -1.4143 3.1620 33 1 2.8596 -2.4269 0.0293 34 1 2.6091 -2.8256 1.8124 35 1 5.8233 0.4896 1.6730 36 1 5.8540 1.8031 -0.8273 37 1 6.7508 0.2737 -0.9857 38 1 8.2031 0.9295 0.9146 39 1 7.3058 2.4587 1.0724 40 1 7.9605 3.0821 -1.2361 41 1 8.8580 1.5532 -1.3946 42 1 12.3897 4.5974 -0.7882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186206972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:31 Heat of formation + Delta-G solvation = -39.565467 kcal Electronic energy + Delta-G solvation = -18835.057273 eV Core-core repulsion = 16008.008619 eV Total energy + Delta-G solvation = -2827.048654 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.54308 -37.85429 -35.39887 -33.63043 -33.23331 -31.43392 -29.03010 -27.40514 -26.98741 -24.33632 -22.68041 -22.24785 -20.69886 -19.86534 -18.59720 -17.02737 -16.74752 -15.82182 -15.60539 -14.99778 -14.60515 -14.26944 -14.11339 -13.88963 -13.37814 -13.12776 -12.73840 -12.70476 -12.61316 -12.08621 -11.96684 -11.90257 -11.71805 -11.34263 -11.19057 -11.08259 -10.89462 -10.77180 -10.20437 -10.12715 -9.93940 -9.88685 -9.76110 -9.41776 -9.23075 -8.80846 -8.56053 -6.06924 -4.05635 2.51323 3.30530 3.31473 3.38511 3.42797 3.74349 4.41503 4.43957 4.53952 4.67338 4.76262 4.99987 5.11047 5.21720 5.27198 5.32424 5.44922 5.54246 5.55205 5.61017 5.61441 5.65804 5.74339 5.82920 5.87553 5.89666 5.92663 6.01694 6.16688 6.29985 6.40875 6.44539 6.46011 6.71906 6.80309 7.22270 7.35756 7.67476 7.76799 8.38778 8.49988 8.96923 9.55383 11.06370 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.039872 B = 0.003653 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.080678 B = 7662.663154 C = 7908.081957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.149 4.149 4 C -0.085 4.085 5 C -0.123 4.123 6 C -0.142 4.142 7 C -0.189 4.189 8 H 0.117 0.883 9 C 0.541 3.459 10 O -0.542 6.542 11 N -0.724 5.724 12 C 0.115 3.885 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.399 0.601 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.014 0.986 41 H 0.018 0.982 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.935 -10.621 4.804 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.206 4.206 4 C -0.085 4.085 5 C -0.180 4.180 6 C -0.179 4.179 7 C -0.211 4.211 8 H 0.135 0.865 9 C 0.328 3.672 10 O -0.420 6.420 11 N -0.374 5.374 12 C -0.008 4.008 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.032 0.968 41 H 0.037 0.963 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.971 -10.548 3.914 24.684 hybrid contribution 0.416 0.216 -0.376 0.601 sum -21.555 -10.332 3.538 24.164 Atomic orbital electron populations 1.21934 0.95441 1.01419 1.01549 1.20687 0.94733 0.96269 0.96149 1.21943 1.02568 0.95323 1.00763 1.21535 0.90015 0.99331 0.97661 1.21521 0.99821 1.01850 0.94800 1.23216 1.01164 0.90152 1.03368 1.22411 0.94107 1.04980 0.99552 0.86543 1.19496 0.80858 0.77866 0.88950 1.90674 1.72287 1.59742 1.19340 1.46127 1.23214 1.56762 1.11334 1.21634 0.91540 0.97085 0.90498 1.21701 0.94116 0.99437 0.99869 1.19500 0.95070 0.95729 0.94590 1.21101 1.04482 1.34820 0.95606 0.91018 1.25030 0.94972 0.94800 0.98684 1.69915 1.11390 1.37054 1.35860 0.86773 0.77444 0.79120 0.85951 1.20228 1.21349 1.18909 0.92461 0.92794 0.92786 0.89353 0.91588 0.93002 0.93481 0.92048 0.90900 0.92400 0.87810 0.88153 0.76698 0.91886 0.91855 0.92117 0.92143 0.96766 0.96335 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.17 37.16 0.30 -0.97 16 2 C -0.06 -0.66 2.21 -90.62 -0.20 -0.86 16 3 C -0.15 -1.81 8.63 37.15 0.32 -1.49 16 4 C -0.08 -0.82 1.92 -154.51 -0.30 -1.12 16 5 C -0.12 -0.92 9.48 37.15 0.35 -0.57 16 6 C -0.14 -1.36 9.35 -26.73 -0.25 -1.61 16 7 C -0.19 -2.01 5.81 -91.77 -0.53 -2.54 16 8 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 9 C 0.54 7.60 5.40 -10.98 -0.06 7.54 16 10 O -0.54 -9.26 13.00 5.55 0.07 -9.19 16 11 N -0.72 -9.99 5.56 -60.29 -0.33 -10.32 16 12 C 0.12 1.92 5.67 -4.04 -0.02 1.89 16 13 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 14 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 15 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 16 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 19 Si 0.88 21.82 27.47 -169.99 -4.67 17.16 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 23 H 0.06 0.44 6.46 -51.93 -0.34 0.11 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.09 1.17 6.61 -51.93 -0.34 0.83 16 27 H 0.07 0.96 4.69 -51.93 -0.24 0.71 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.49 5.59 -51.93 -0.29 0.20 16 32 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 33 H 0.10 1.13 7.90 -51.93 -0.41 0.72 16 34 H 0.10 0.74 8.05 -51.93 -0.42 0.33 16 35 H 0.40 4.52 8.47 -40.82 -0.35 4.17 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 41 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -31.69 329.98 -7.63 -39.32 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.38 Total: 0.74 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.07 Total: -15.60 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.44 Total: -37.39 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.07 Total: -9.19 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.69 -7.63 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186206972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.244 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds