Wall clock time and date at job start Mon Mar 30 2020 00:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47177 * 2 1 4 4 C 1.53006 * 109.46735 * 120.00378 * 2 1 3 5 5 C 1.52992 * 115.55912 * 326.25702 * 4 2 1 6 6 C 1.52995 * 117.49819 * 111.95213 * 4 2 1 7 7 C 1.53000 * 117.49417 * 180.57385 * 4 2 1 8 8 H 1.08996 * 117.49622 * 144.99231 * 7 4 2 9 9 C 1.50696 * 117.50128 * 359.97438 * 7 4 2 10 10 O 1.21286 * 120.00252 * 322.40531 * 9 7 4 11 11 N 1.34782 * 120.00219 * 142.40411 * 9 7 4 12 12 C 1.46501 * 120.00069 * 179.97438 * 11 9 7 13 13 C 1.52994 * 109.46959 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47108 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47288 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99838 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00101 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99969 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99998 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47488 * 89.99823 * 19 17 15 21 21 H 1.48501 * 109.47327 * 209.99460 * 19 17 15 22 22 H 1.48499 * 109.47357 * 329.99743 * 19 17 15 23 23 H 1.09002 * 109.47230 * 300.00104 * 1 2 3 24 24 H 1.09001 * 109.47064 * 59.99933 * 1 2 3 25 25 H 1.09003 * 109.47787 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46782 * 239.99691 * 2 1 3 27 27 H 1.08997 * 109.46952 * 185.95590 * 3 2 1 28 28 H 1.08998 * 109.47104 * 305.94851 * 3 2 1 29 29 H 1.08992 * 109.47031 * 65.95693 * 3 2 1 30 30 H 1.08999 * 109.47312 * 274.31520 * 5 4 2 31 31 H 1.08998 * 109.47469 * 34.31695 * 5 4 2 32 32 H 1.09000 * 109.46663 * 154.31662 * 5 4 2 33 33 H 1.09004 * 117.50388 * 359.97438 * 6 4 2 34 34 H 1.08998 * 117.49654 * 214.97174 * 6 4 2 35 35 H 0.97001 * 119.99648 * 0.02562 * 11 9 7 36 36 H 1.09004 * 109.46831 * 60.00578 * 12 11 9 37 37 H 1.09001 * 109.47410 * 300.00273 * 12 11 9 38 38 H 1.09004 * 109.46827 * 60.00637 * 13 12 11 39 39 H 1.08998 * 109.47797 * 300.00156 * 13 12 11 40 40 H 1.08994 * 109.47413 * 60.00397 * 14 13 12 41 41 H 1.09001 * 109.47182 * 300.00286 * 14 13 12 42 42 H 0.96996 * 119.99484 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 1.1778 -0.5599 2.5028 6 6 2.7536 -2.0599 1.0502 7 6 3.5548 -0.8165 1.4411 8 1 3.9373 -0.7636 2.4604 9 6 4.4305 -0.1930 0.3849 10 8 4.1116 -0.2585 -0.7834 11 7 5.5681 0.4375 0.7386 12 6 6.4196 1.0431 -0.2882 13 6 7.6374 1.6893 0.3752 14 6 8.5264 2.3223 -0.6971 15 6 9.7262 2.9583 -0.0437 16 1 9.8432 2.9149 1.0291 17 6 10.6751 3.5946 -0.8155 18 7 11.7220 4.1501 -0.2452 19 14 10.4731 3.6690 -2.6710 20 1 9.7144 4.8918 -3.0378 21 1 11.8114 3.7055 -3.3136 22 1 9.7329 2.4689 -3.1369 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 3.1247 1.4442 -0.1066 28 1 1.5923 1.9861 -0.8319 29 1 1.7664 1.9245 0.9384 30 1 1.4603 0.3555 3.0227 31 1 0.1274 -0.5060 2.2170 32 1 1.3316 -1.4143 3.1620 33 1 2.8596 -2.4269 0.0293 34 1 2.6091 -2.8256 1.8124 35 1 5.8233 0.4896 1.6730 36 1 5.8540 1.8031 -0.8273 37 1 6.7508 0.2737 -0.9857 38 1 8.2031 0.9295 0.9146 39 1 7.3058 2.4587 1.0724 40 1 7.9605 3.0821 -1.2361 41 1 8.8580 1.5532 -1.3946 42 1 12.3897 4.5974 -0.7882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186206972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:31 Heat of formation + Delta-G solvation = -59.271824 kcal Electronic energy + Delta-G solvation = -18835.911804 eV Core-core repulsion = 16008.008619 eV Total energy + Delta-G solvation = -2827.903185 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.51989 -38.84938 -36.85236 -35.13865 -34.40635 -33.24558 -29.84469 -28.99314 -27.76142 -25.69155 -23.70696 -23.43741 -22.25285 -21.05487 -19.52800 -18.91314 -17.96429 -16.91580 -16.86207 -16.27610 -16.02603 -15.54387 -15.38898 -14.82624 -14.69445 -14.13385 -14.10439 -13.85709 -13.77276 -13.38093 -13.31885 -12.82470 -12.75020 -12.70571 -12.38205 -12.13335 -11.99859 -11.94907 -11.80729 -11.61950 -11.56850 -11.35230 -10.98437 -10.77929 -10.74893 -10.50596 -10.02753 -8.31137 -6.35119 1.35357 1.36961 1.48846 1.49842 2.22080 2.34812 2.91489 3.04529 3.61619 3.75025 3.88432 3.97160 4.08025 4.16791 4.18945 4.36379 4.43839 4.48153 4.57132 4.76986 4.79562 4.86326 4.88978 4.91464 4.96821 5.00575 5.01655 5.05239 5.11071 5.20904 5.25336 5.36207 5.40885 5.44708 5.53151 5.53804 5.63591 5.65223 6.25667 6.62038 6.73003 7.29737 7.31335 8.85375 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.039872 B = 0.003653 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.080678 B = 7662.663154 C = 7908.081957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.081 4.081 5 C -0.120 4.120 6 C -0.136 4.136 7 C -0.197 4.197 8 H 0.143 0.857 9 C 0.537 3.463 10 O -0.577 6.577 11 N -0.719 5.719 12 C 0.130 3.870 13 C -0.100 4.100 14 C -0.012 4.012 15 C -0.531 4.531 16 H 0.038 0.962 17 C 0.005 3.995 18 N -0.950 5.950 19 Si 0.947 3.053 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.249 1.249 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.413 0.587 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.036 -11.622 5.230 27.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.204 4.204 4 C -0.082 4.082 5 C -0.176 4.176 6 C -0.173 4.173 7 C -0.218 4.218 8 H 0.160 0.840 9 C 0.326 3.674 10 O -0.458 6.458 11 N -0.370 5.370 12 C 0.006 3.994 13 C -0.138 4.138 14 C -0.050 4.050 15 C -0.569 4.569 16 H 0.056 0.944 17 C -0.192 4.192 18 N -0.591 5.591 19 Si 0.771 3.229 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.173 1.173 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.147 0.853 35 H 0.249 0.751 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.087 -11.562 4.372 27.074 hybrid contribution 1.081 0.534 -0.458 1.290 sum -23.006 -11.029 3.914 25.811 Atomic orbital electron populations 1.21894 0.93491 1.02266 1.02166 1.20642 0.96362 0.95219 0.95836 1.21906 1.00765 0.96432 1.01260 1.21641 0.89481 0.98982 0.98049 1.21547 0.99675 1.02748 0.93658 1.23288 1.00299 0.90529 1.03195 1.22468 0.94171 1.05688 0.99453 0.83970 1.20119 0.80741 0.77196 0.89315 1.90662 1.72997 1.60991 1.21162 1.45982 1.22994 1.56558 1.11470 1.21239 0.90898 0.96546 0.90742 1.21473 0.94233 0.99478 0.98578 1.19461 0.94082 0.95758 0.95658 1.21462 1.06236 1.34823 0.94416 0.94409 1.25981 0.94594 0.94493 1.04113 1.70058 1.12596 1.38445 1.37972 0.85698 0.77796 0.79950 0.79474 1.19194 1.20882 1.17287 0.90972 0.93082 0.91810 0.92349 0.94184 0.93425 0.92159 0.91782 0.90009 0.90744 0.89774 0.85290 0.75109 0.92749 0.92751 0.91769 0.91784 0.96311 0.96194 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.17 71.98 0.59 -1.59 16 2 C -0.06 -1.31 2.21 -10.79 -0.02 -1.33 16 3 C -0.15 -3.48 8.63 71.98 0.62 -2.86 16 4 C -0.08 -1.38 1.92 -52.18 -0.10 -1.48 16 5 C -0.12 -1.34 9.48 71.98 0.68 -0.66 16 6 C -0.14 -2.31 9.35 30.59 0.29 -2.02 16 7 C -0.20 -3.76 5.81 -11.54 -0.07 -3.83 16 8 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 9 C 0.54 14.70 5.40 87.65 0.47 15.17 16 10 O -0.58 -19.96 13.00 -3.05 -0.04 -20.00 16 11 N -0.72 -19.09 5.56 -463.05 -2.57 -21.66 16 12 C 0.13 4.23 5.67 86.38 0.49 4.72 16 13 C -0.10 -3.67 5.27 30.59 0.16 -3.51 16 14 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 15 C -0.53 -30.47 9.66 25.60 0.25 -30.22 16 16 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 17 C 0.01 0.30 5.47 84.65 0.46 0.76 16 18 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 19 Si 0.95 44.78 27.47 68.60 1.88 46.66 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 23 H 0.07 0.91 6.46 -2.39 -0.02 0.89 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 1.58 6.61 -2.39 -0.02 1.56 16 27 H 0.04 1.16 4.69 -2.39 -0.01 1.15 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.79 5.59 -2.39 -0.01 0.78 16 32 H 0.07 0.62 7.90 -2.39 -0.02 0.60 16 33 H 0.08 1.79 7.90 -2.39 -0.02 1.77 16 34 H 0.13 1.44 8.05 -2.39 -0.02 1.42 16 35 H 0.41 8.64 8.47 -92.71 -0.79 7.85 16 36 H 0.05 1.87 8.14 -2.38 -0.02 1.86 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 40 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 41 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 42 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -69.74 329.98 3.66 -66.09 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.14 Total: 15.55 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: 3.94 Total: -27.26 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -2.27 Total: -81.05 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.04 Total: -20.00 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -69.74 3.66 -66.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186206972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.817 kcal (2) G-P(sol) polarization free energy of solvation -69.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds