Wall clock time and date at job start Sun Mar 29 2020 23:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 112.89490 * 2 1 4 4 C 1.53777 * 113.59683 * 228.80076 * 2 1 3 5 5 H 1.08994 * 113.60584 * 156.89251 * 4 2 1 6 6 N 1.46899 * 113.68301 * 26.02470 * 4 2 1 7 7 C 1.46901 * 111.00188 * 157.92042 * 6 4 2 8 8 C 1.52995 * 109.47163 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.47008 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47332 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99305 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00291 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99891 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00231 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47069 * 90.00159 * 14 12 10 16 16 H 1.48505 * 109.47507 * 209.99961 * 14 12 10 17 17 H 1.48499 * 109.47295 * 329.99962 * 14 12 10 18 18 C 1.53499 * 87.12399 * 271.45217 * 4 2 1 19 19 H 1.09000 * 116.76011 * 92.54530 * 18 4 2 20 20 C 1.54013 * 113.93968 * 230.44452 * 18 4 2 21 21 C 1.53761 * 104.92706 * 77.84506 * 20 18 4 22 22 O 1.42980 * 107.95459 * 358.13514 * 21 20 18 23 23 C 1.43505 * 109.26911 * 19.85465 * 22 21 20 24 24 H 1.09000 * 114.91642 * 100.30029 * 23 22 21 25 25 H 1.09001 * 109.47424 * 308.29719 * 1 2 3 26 26 H 1.09006 * 109.47169 * 68.29962 * 1 2 3 27 27 H 1.09002 * 109.47438 * 188.30060 * 1 2 3 28 28 H 1.09008 * 109.47042 * 171.69635 * 3 2 1 29 29 H 1.09000 * 109.47243 * 291.69841 * 3 2 1 30 30 H 1.09004 * 109.46833 * 51.70274 * 3 2 1 31 31 H 1.00906 * 110.99856 * 281.86765 * 6 4 2 32 32 H 1.09002 * 109.46557 * 299.99738 * 7 6 4 33 33 H 1.08997 * 109.47054 * 59.99135 * 7 6 4 34 34 H 1.08997 * 109.47377 * 299.99983 * 8 7 6 35 35 H 1.09002 * 109.47004 * 60.00108 * 8 7 6 36 36 H 1.09002 * 109.46971 * 300.00173 * 9 8 7 37 37 H 1.09002 * 109.47432 * 59.99966 * 9 8 7 38 38 H 0.96994 * 119.99670 * 180.02562 * 13 12 10 39 39 H 1.09007 * 110.35163 * 196.70423 * 20 18 4 40 40 H 1.09000 * 110.35149 * 318.98225 * 20 18 4 41 41 H 1.08992 * 109.76991 * 238.50956 * 21 20 18 42 42 H 1.09003 * 109.76888 * 117.75402 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1252 1.4094 0.0000 4 6 2.1455 -0.9282 -1.0603 5 1 3.1620 -0.6545 -1.3427 6 7 1.2739 -1.1590 -2.2200 7 6 2.0551 -1.5836 -3.3895 8 6 1.1150 -1.8143 -4.5743 9 6 1.9286 -2.2559 -5.7924 10 6 1.0028 -2.4825 -6.9597 11 1 -0.0598 -2.3275 -6.8440 12 6 1.5120 -2.8887 -8.1748 13 7 2.8058 -3.0789 -8.3151 14 14 0.3643 -3.1704 -9.6214 15 1 0.2143 -1.9071 -10.3875 16 1 0.9304 -4.2210 -10.5053 17 1 -0.9642 -3.6070 -9.1217 18 6 2.0791 -2.0451 -0.0094 19 1 1.1844 -2.6676 -0.0108 20 6 3.4036 -2.8090 0.1753 21 6 4.2794 -1.8814 1.0336 22 8 3.5429 -0.6802 1.2765 23 6 2.1462 -0.9293 1.0612 24 1 1.5634 -1.0910 1.9680 25 1 -0.3634 0.6369 0.8065 26 1 -0.3634 0.3800 -0.9549 27 1 -0.3634 -1.0169 0.1484 28 1 3.2034 1.3485 0.1484 29 1 1.9165 1.8920 -0.9548 30 1 1.6798 1.9919 0.8066 31 1 0.5536 -1.8314 -2.0029 32 1 2.7780 -0.8086 -3.6443 33 1 2.5815 -2.5095 -3.1580 34 1 0.3923 -2.5894 -4.3192 35 1 0.5883 -0.8885 -4.8058 36 1 2.6510 -1.4804 -6.0474 37 1 2.4557 -3.1816 -5.5612 38 1 3.1641 -3.3644 -9.1701 39 1 3.2285 -3.7517 0.6938 40 1 3.8754 -2.9888 -0.7907 41 1 5.2010 -1.6474 0.5009 42 1 4.5140 -2.3679 1.9805 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228195413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:59 Heat of formation + Delta-G solvation = -42.125912 kcal Electronic energy + Delta-G solvation = -19224.891653 eV Core-core repulsion = 16397.731970 eV Total energy + Delta-G solvation = -2827.159683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43334 -36.79832 -35.01520 -33.07616 -32.16647 -30.59156 -28.95195 -27.36883 -26.35743 -23.99722 -23.02355 -22.05702 -20.94702 -20.14502 -18.32047 -16.71713 -16.30631 -16.13642 -15.40087 -14.75183 -14.57316 -14.46924 -14.18479 -13.67019 -13.57485 -13.06036 -12.52441 -12.28990 -12.15489 -12.03403 -11.96142 -11.82333 -11.62888 -11.39107 -11.01495 -10.91524 -10.78570 -10.64265 -10.55202 -10.44772 -10.06844 -9.67598 -9.53505 -9.25460 -9.01045 -8.32935 -8.06065 -5.98183 -4.00231 3.33293 3.39266 3.42773 3.49331 4.12808 4.27044 4.46280 4.50991 4.62934 4.79377 4.88411 5.05449 5.11135 5.20125 5.37393 5.37886 5.42315 5.55182 5.61677 5.72448 5.73964 5.78729 5.83919 5.89506 5.93826 5.96277 6.04990 6.17906 6.33796 6.37982 6.44088 6.74215 6.79521 6.91934 7.15346 7.38171 7.65296 7.70373 7.85428 8.02368 8.45688 9.07039 9.63766 11.13309 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.034831 B = 0.003888 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.679259 B = 7200.591945 C = 7599.852954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.072 4.072 3 C -0.130 4.130 4 C 0.093 3.907 5 H 0.099 0.901 6 N -0.674 5.674 7 C 0.060 3.940 8 C -0.107 4.107 9 C 0.022 3.978 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.170 4.170 19 H 0.110 0.890 20 C -0.149 4.149 21 C 0.053 3.947 22 O -0.361 6.361 23 C 0.060 3.940 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.339 0.661 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.013 0.987 38 H 0.260 0.740 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 3.269 20.473 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.073 4.073 3 C -0.187 4.187 4 C -0.018 4.018 5 H 0.117 0.883 6 N -0.303 5.303 7 C -0.069 4.069 8 C -0.145 4.145 9 C -0.016 4.016 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.190 4.190 19 H 0.128 0.872 20 C -0.186 4.186 21 C -0.023 4.023 22 O -0.280 6.280 23 C 0.002 3.998 24 H 0.108 0.892 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.157 0.843 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.353 4.067 20.187 20.595 hybrid contribution -0.279 -1.500 -0.645 1.656 sum -0.632 2.567 19.541 19.719 Atomic orbital electron populations 1.21414 0.92259 1.01345 1.02705 1.22135 0.95925 0.95211 0.94004 1.21569 1.01104 0.94654 1.01394 1.23024 0.97076 0.93266 0.88458 0.88304 1.60428 1.14246 1.51418 1.04229 1.22146 0.96466 0.97961 0.90293 1.21620 0.97862 1.00400 0.94596 1.19064 0.95188 0.96273 0.91038 1.21259 0.93804 1.45149 0.95454 0.92692 1.25027 0.95024 0.95608 0.98848 1.69970 1.11521 1.47360 1.24798 0.86599 0.81016 0.77899 0.82517 1.20648 1.21271 1.19892 1.24749 0.98506 0.96238 0.99549 0.87219 1.22698 0.95587 0.99189 1.01162 1.23041 0.95541 0.85352 0.98409 1.88315 1.16866 1.32538 1.90317 1.24015 0.83424 0.96600 0.95799 0.89213 0.92964 0.90435 0.93021 0.91898 0.92292 0.93135 0.84290 0.91571 0.95894 0.93750 0.92568 0.96610 0.96880 0.93058 0.90827 0.90214 0.90290 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.34 37.16 0.31 -0.90 16 2 C -0.07 -0.80 1.32 -153.62 -0.20 -1.00 16 3 C -0.13 -1.49 9.07 37.15 0.34 -1.15 16 4 C 0.09 1.16 2.88 -67.05 -0.19 0.97 16 5 H 0.10 1.38 7.75 -51.93 -0.40 0.98 16 6 N -0.67 -9.57 5.66 -106.03 -0.60 -10.17 16 7 C 0.06 1.03 5.55 -3.83 -0.02 1.01 16 8 C -0.11 -2.21 5.41 -26.73 -0.14 -2.36 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 11 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 14 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.17 -1.81 4.10 -88.90 -0.36 -2.17 16 19 H 0.11 1.08 7.66 -51.93 -0.40 0.68 16 20 C -0.15 -1.48 6.50 -25.81 -0.17 -1.65 16 21 C 0.05 0.53 7.69 37.55 0.29 0.82 16 22 O -0.36 -4.34 9.62 -35.23 -0.34 -4.68 16 23 C 0.06 0.64 4.98 -25.31 -0.13 0.52 16 24 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.88 7.88 -51.93 -0.41 0.47 16 27 H 0.05 0.48 7.45 -51.93 -0.39 0.09 16 28 H 0.06 0.76 7.09 -51.92 -0.37 0.39 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.34 4.48 8.12 -39.29 -0.32 4.16 16 32 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 330.77 15.07 4.98 4.98 Total: -1.00 -30.11 330.77 -8.82 -38.93 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.74 Total: -0.23 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -0.83 Total: -19.16 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.14 Total: -36.67 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.34 Total: -4.68 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.11 -8.82 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228195413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.199 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds