Wall clock time and date at job start Sun Mar 29 2020 23:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48495 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46745 * 299.99565 * 3 2 1 6 6 H 1.48498 * 109.47103 * 59.99243 * 3 2 1 7 7 C 1.37881 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99619 * 175.14881 * 7 2 1 9 9 C 1.50708 * 119.99823 * 355.42157 * 7 2 1 10 10 C 1.52999 * 115.54730 * 274.92856 * 9 7 2 11 11 N 1.46894 * 109.47155 * 294.80053 * 10 9 7 12 12 C 1.46906 * 110.99880 * 185.38213 * 11 10 9 13 13 C 1.53001 * 109.46923 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47096 * 179.97438 * 13 12 11 15 15 C 1.53179 * 109.54396 * 294.55691 * 14 13 12 16 16 C 1.53096 * 109.16517 * 183.15200 * 15 14 13 17 17 O 1.42897 * 109.41359 * 57.60903 * 16 15 14 18 18 C 1.42909 * 114.09965 * 298.84072 * 17 16 15 19 19 C 1.53095 * 109.41156 * 61.15913 * 18 17 16 20 20 C 1.52996 * 117.49449 * 129.26134 * 9 7 2 21 21 C 1.52994 * 117.49673 * 60.60210 * 9 7 2 22 22 H 0.96995 * 119.99832 * 5.00976 * 1 2 3 23 23 H 1.08995 * 109.47142 * 54.80385 * 10 9 7 24 24 H 1.09006 * 109.46629 * 174.80683 * 10 9 7 25 25 H 1.00901 * 111.00244 * 61.43158 * 11 10 9 26 26 H 1.08996 * 109.46892 * 299.99852 * 12 11 10 27 27 H 1.09001 * 109.47015 * 60.00411 * 12 11 10 28 28 H 1.08998 * 109.47601 * 299.99878 * 13 12 11 29 29 H 1.09001 * 109.47006 * 60.00324 * 13 12 11 30 30 H 1.08997 * 109.54247 * 54.82084 * 14 13 12 31 31 H 1.08998 * 109.52352 * 303.06085 * 15 14 13 32 32 H 1.09000 * 109.52150 * 63.24409 * 15 14 13 33 33 H 1.09000 * 109.47924 * 297.62662 * 16 15 14 34 34 H 1.09004 * 109.47787 * 177.59623 * 16 15 14 35 35 H 1.09001 * 109.47860 * 301.18014 * 18 17 16 36 36 H 1.08994 * 109.49000 * 181.15092 * 18 17 16 37 37 H 1.08999 * 109.51768 * 182.48945 * 19 18 17 38 38 H 1.08998 * 109.51989 * 62.29958 * 19 18 17 39 39 H 1.08999 * 117.50032 * 359.97438 * 20 9 7 40 40 H 1.09002 * 117.49839 * 145.02178 * 20 9 7 41 41 H 1.09004 * 117.49798 * 214.97571 * 21 9 7 42 42 H 1.09005 * 117.50278 * 359.97231 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0816 -1.1957 -0.0786 9 6 1.2546 -2.4971 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1612 -3.2474 2.2529 12 6 1.8749 -3.8095 3.5796 13 6 3.1903 -4.1022 4.3041 14 6 2.8922 -4.6870 5.6861 15 6 2.1926 -3.6321 6.5488 16 6 1.9692 -4.1990 7.9533 17 8 3.2248 -4.5883 8.5136 18 6 3.9028 -5.6066 7.7749 19 6 4.2038 -5.0962 6.3632 20 6 1.5731 -3.5804 -0.9271 21 6 0.2454 -2.8219 -0.9977 22 1 -0.4850 0.8368 -0.0734 23 1 0.3752 -2.1614 2.0430 24 1 0.3012 -3.8499 1.4843 25 1 2.7411 -2.4250 2.3261 26 1 1.2927 -3.0934 4.1595 27 1 1.3077 -4.7336 3.4680 28 1 3.7730 -4.8181 3.7244 29 1 3.7572 -3.1779 4.4157 30 1 2.2480 -5.5599 5.5814 31 1 2.8162 -2.7403 6.6109 32 1 1.2318 -3.3754 6.1025 33 1 1.3125 -5.0670 7.8947 34 1 1.5101 -3.4375 8.5838 35 1 3.2713 -6.4930 7.7140 36 1 4.8366 -5.8594 8.2769 37 1 4.6814 -5.8867 5.7843 38 1 4.8681 -4.2341 6.4217 39 1 2.3247 -3.3505 -1.6823 40 1 1.5429 -4.6177 -0.5938 41 1 -0.6578 -3.3606 -0.7108 42 1 0.1234 -2.0930 -1.7990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309179827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:00 Heat of formation + Delta-G solvation = -46.834562 kcal Electronic energy + Delta-G solvation = -18893.546595 eV Core-core repulsion = 16066.182730 eV Total energy + Delta-G solvation = -2827.363865 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.56816 -37.07448 -35.76963 -33.53980 -31.87402 -31.23748 -29.24378 -25.85254 -24.96244 -23.73861 -22.91766 -21.20922 -20.80819 -20.07557 -18.95694 -16.30076 -16.16256 -15.89167 -15.40290 -14.89354 -14.69334 -14.59801 -13.93996 -13.86892 -13.66911 -13.05897 -12.56377 -12.47415 -12.12109 -11.90000 -11.45931 -11.36969 -11.17825 -11.10788 -10.95741 -10.85957 -10.66548 -10.42046 -10.31929 -10.28091 -10.05894 -9.61677 -9.26812 -8.81492 -8.37502 -8.02439 -7.47271 -6.00118 -4.07386 3.27119 3.36194 3.40186 3.73475 4.40687 4.51284 4.63738 4.75691 4.88812 5.02579 5.11279 5.25752 5.28058 5.32301 5.46413 5.50255 5.60163 5.61116 5.69118 5.80652 5.85192 5.96264 5.99628 6.08775 6.15753 6.23398 6.43258 6.46726 6.51712 6.60562 6.86311 6.88723 6.95510 7.04242 7.23351 7.53683 7.64039 7.90197 8.02319 8.29659 8.52655 8.96685 9.58349 11.07085 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.004278 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.624321 B = 6542.965221 C = 7074.246869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.491 4.491 8 H 0.060 0.940 9 C 0.046 3.954 10 C 0.106 3.894 11 N -0.682 5.682 12 C 0.058 3.942 13 C -0.109 4.109 14 C -0.087 4.087 15 C -0.154 4.154 16 C 0.060 3.940 17 O -0.387 6.387 18 C 0.061 3.939 19 C -0.151 4.151 20 C -0.201 4.201 21 C -0.156 4.156 22 H 0.258 0.742 23 H 0.029 0.971 24 H 0.037 0.963 25 H 0.346 0.654 26 H 0.021 0.979 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 -9.335 13.125 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.529 4.529 8 H 0.078 0.922 9 C 0.045 3.955 10 C -0.022 4.022 11 N -0.314 5.314 12 C -0.072 4.072 13 C -0.147 4.147 14 C -0.106 4.106 15 C -0.192 4.192 16 C -0.016 4.016 17 O -0.306 6.306 18 C -0.016 4.016 19 C -0.188 4.188 20 C -0.238 4.238 21 C -0.194 4.194 22 H 0.068 0.932 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.164 0.836 26 H 0.039 0.961 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.195 -9.734 13.060 16.820 hybrid contribution -0.154 1.651 0.058 1.659 sum 4.041 -8.083 13.118 15.929 Atomic orbital electron populations 1.70023 1.05835 1.26380 1.49533 1.25015 0.94793 0.98822 0.94795 0.86629 0.80355 0.84060 0.77544 1.19644 1.21099 1.21116 1.20516 0.92823 0.88777 1.50736 0.92174 1.18758 0.97853 0.92789 0.86086 1.21430 0.89121 0.96346 0.95350 1.60434 1.18995 1.36675 1.15265 1.21947 0.95934 0.98936 0.90379 1.21579 0.98102 1.01199 0.93833 1.21173 0.96252 0.98197 0.95005 1.22317 1.02033 0.99308 0.95493 1.22600 0.85390 0.99077 0.94557 1.87910 1.34180 1.57445 1.51021 1.22578 0.96952 0.89976 0.92114 1.22247 0.98186 1.02129 0.96277 1.22864 0.99720 0.95867 1.05379 1.22497 0.90832 1.01762 1.04355 0.93219 0.95270 0.94430 0.83554 0.96084 0.92215 0.91142 0.92072 0.91199 0.90983 0.90466 0.93359 0.89066 0.93390 0.89144 0.90829 0.90990 0.90962 0.91829 0.92411 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 12.65 55.43 0.70 -24.15 16 2 C 0.07 1.86 5.43 -17.82 -0.10 1.76 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.49 -13.20 8.33 -34.43 -0.29 -13.49 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.05 1.13 1.65 -155.66 -0.26 0.88 16 10 C 0.11 2.39 5.54 -3.83 -0.02 2.37 16 11 N -0.68 -13.36 6.47 -113.78 -0.74 -14.10 16 12 C 0.06 0.91 5.44 -3.82 -0.02 0.89 16 13 C -0.11 -1.42 4.95 -26.73 -0.13 -1.56 16 14 C -0.09 -0.95 2.27 -90.44 -0.21 -1.16 16 15 C -0.15 -1.68 5.10 -26.59 -0.14 -1.82 16 16 C 0.06 0.61 6.84 37.21 0.25 0.86 16 17 O -0.39 -4.48 10.77 -35.23 -0.38 -4.85 16 18 C 0.06 0.57 6.84 37.21 0.25 0.82 16 19 C -0.15 -1.47 5.42 -26.59 -0.14 -1.61 16 20 C -0.20 -4.58 9.96 -26.70 -0.27 -4.84 16 21 C -0.16 -3.79 9.14 -26.70 -0.24 -4.03 16 22 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 23 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 25 H 0.35 7.07 8.31 -39.29 -0.33 6.75 16 26 H 0.02 0.34 6.66 -51.93 -0.35 -0.01 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.86 6.75 -51.93 -0.35 0.51 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -28.29 333.87 -9.46 -37.75 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.75 Total: 5.33 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -1.30 Total: -20.92 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.04 Total: -38.25 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.38 Total: -4.85 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.29 -9.46 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309179827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.085 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds