Wall clock time and date at job start Sun Mar 29 2020 23:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48495 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46745 * 299.99565 * 3 2 1 6 6 H 1.48498 * 109.47103 * 59.99243 * 3 2 1 7 7 C 1.37881 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99619 * 175.14881 * 7 2 1 9 9 C 1.50708 * 119.99823 * 355.42157 * 7 2 1 10 10 C 1.52999 * 115.54730 * 274.92856 * 9 7 2 11 11 N 1.46894 * 109.47155 * 294.80053 * 10 9 7 12 12 C 1.46906 * 110.99880 * 185.38213 * 11 10 9 13 13 C 1.53001 * 109.46923 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47096 * 179.97438 * 13 12 11 15 15 C 1.53179 * 109.54396 * 294.55691 * 14 13 12 16 16 C 1.53096 * 109.16517 * 183.15200 * 15 14 13 17 17 O 1.42897 * 109.41359 * 57.60903 * 16 15 14 18 18 C 1.42909 * 114.09965 * 298.84072 * 17 16 15 19 19 C 1.53095 * 109.41156 * 61.15913 * 18 17 16 20 20 C 1.52996 * 117.49449 * 129.26134 * 9 7 2 21 21 C 1.52994 * 117.49673 * 60.60210 * 9 7 2 22 22 H 0.96995 * 119.99832 * 5.00976 * 1 2 3 23 23 H 1.08995 * 109.47142 * 54.80385 * 10 9 7 24 24 H 1.09006 * 109.46629 * 174.80683 * 10 9 7 25 25 H 1.00901 * 111.00244 * 61.43158 * 11 10 9 26 26 H 1.08996 * 109.46892 * 299.99852 * 12 11 10 27 27 H 1.09001 * 109.47015 * 60.00411 * 12 11 10 28 28 H 1.08998 * 109.47601 * 299.99878 * 13 12 11 29 29 H 1.09001 * 109.47006 * 60.00324 * 13 12 11 30 30 H 1.08997 * 109.54247 * 54.82084 * 14 13 12 31 31 H 1.08998 * 109.52352 * 303.06085 * 15 14 13 32 32 H 1.09000 * 109.52150 * 63.24409 * 15 14 13 33 33 H 1.09000 * 109.47924 * 297.62662 * 16 15 14 34 34 H 1.09004 * 109.47787 * 177.59623 * 16 15 14 35 35 H 1.09001 * 109.47860 * 301.18014 * 18 17 16 36 36 H 1.08994 * 109.49000 * 181.15092 * 18 17 16 37 37 H 1.08999 * 109.51768 * 182.48945 * 19 18 17 38 38 H 1.08998 * 109.51989 * 62.29958 * 19 18 17 39 39 H 1.08999 * 117.50032 * 359.97438 * 20 9 7 40 40 H 1.09002 * 117.49839 * 145.02178 * 20 9 7 41 41 H 1.09004 * 117.49798 * 214.97571 * 21 9 7 42 42 H 1.09005 * 117.50278 * 359.97231 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0816 -1.1957 -0.0786 9 6 1.2546 -2.4971 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1612 -3.2474 2.2529 12 6 1.8749 -3.8095 3.5796 13 6 3.1903 -4.1022 4.3041 14 6 2.8922 -4.6870 5.6861 15 6 2.1926 -3.6321 6.5488 16 6 1.9692 -4.1990 7.9533 17 8 3.2248 -4.5883 8.5136 18 6 3.9028 -5.6066 7.7749 19 6 4.2038 -5.0962 6.3632 20 6 1.5731 -3.5804 -0.9271 21 6 0.2454 -2.8219 -0.9977 22 1 -0.4850 0.8368 -0.0734 23 1 0.3752 -2.1614 2.0430 24 1 0.3012 -3.8499 1.4843 25 1 2.7411 -2.4250 2.3261 26 1 1.2927 -3.0934 4.1595 27 1 1.3077 -4.7336 3.4680 28 1 3.7730 -4.8181 3.7244 29 1 3.7572 -3.1779 4.4157 30 1 2.2480 -5.5599 5.5814 31 1 2.8162 -2.7403 6.6109 32 1 1.2318 -3.3754 6.1025 33 1 1.3125 -5.0670 7.8947 34 1 1.5101 -3.4375 8.5838 35 1 3.2713 -6.4930 7.7140 36 1 4.8366 -5.8594 8.2769 37 1 4.6814 -5.8867 5.7843 38 1 4.8681 -4.2341 6.4217 39 1 2.3247 -3.3505 -1.6823 40 1 1.5429 -4.6177 -0.5938 41 1 -0.6578 -3.3606 -0.7108 42 1 0.1234 -2.0930 -1.7990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309179827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:00 Heat of formation + Delta-G solvation = -63.286142 kcal Electronic energy + Delta-G solvation = -18894.259989 eV Core-core repulsion = 16066.182730 eV Total energy + Delta-G solvation = -2828.077259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40541 -38.81124 -37.03541 -34.84924 -33.93435 -32.01505 -30.45645 -27.71756 -26.47475 -24.65404 -24.12282 -22.82258 -22.25336 -21.06473 -20.76008 -17.92054 -17.10334 -17.00246 -16.68917 -16.57636 -15.98898 -15.69143 -15.49834 -15.30945 -14.70735 -14.53704 -14.06936 -13.63871 -13.43087 -13.09798 -12.96092 -12.90027 -12.86291 -12.55185 -12.29917 -12.20993 -12.13684 -11.94345 -11.70645 -11.34340 -11.19507 -11.07388 -10.81682 -10.44053 -10.34923 -9.91670 -9.10604 -8.07733 -6.20202 1.38973 1.42776 1.53071 2.42858 2.99535 3.19482 3.27033 3.68877 3.77502 3.87078 4.02231 4.10356 4.24548 4.30688 4.39555 4.48498 4.52300 4.61938 4.65135 4.70194 4.73558 4.81708 4.82204 4.90461 4.96093 5.01321 5.02313 5.08426 5.13846 5.18894 5.21545 5.31024 5.37408 5.49604 5.65535 5.71330 5.81834 6.28953 6.36939 6.48611 6.65114 6.89623 7.48161 8.99129 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.004278 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.624321 B = 6542.965221 C = 7074.246869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.052 0.948 9 C 0.021 3.979 10 C 0.120 3.880 11 N -0.682 5.682 12 C 0.059 3.941 13 C -0.099 4.099 14 C -0.083 4.083 15 C -0.153 4.153 16 C 0.060 3.940 17 O -0.406 6.406 18 C 0.057 3.943 19 C -0.147 4.147 20 C -0.179 4.179 21 C -0.162 4.162 22 H 0.258 0.742 23 H -0.002 1.002 24 H 0.048 0.952 25 H 0.339 0.661 26 H 0.018 0.982 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.030 -10.385 14.004 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.176 4.176 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.021 3.979 10 C -0.009 4.009 11 N -0.313 5.313 12 C -0.070 4.070 13 C -0.137 4.137 14 C -0.102 4.102 15 C -0.191 4.191 16 C -0.016 4.016 17 O -0.326 6.326 18 C -0.019 4.019 19 C -0.185 4.185 20 C -0.216 4.216 21 C -0.200 4.200 22 H 0.067 0.933 23 H 0.017 0.983 24 H 0.066 0.934 25 H 0.156 0.844 26 H 0.036 0.964 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.031 -10.799 13.943 18.340 hybrid contribution -0.405 1.939 -0.225 1.993 sum 4.626 -8.861 13.718 16.974 Atomic orbital electron populations 1.70126 1.07062 1.27019 1.50550 1.25670 0.95507 1.01792 0.94638 0.85674 0.79366 0.80267 0.77357 1.19037 1.20977 1.20941 1.20728 0.92621 0.90121 1.50402 0.92953 1.18939 0.98377 0.93058 0.87556 1.21169 0.90045 0.95560 0.94142 1.60440 1.17441 1.35998 1.17372 1.22036 0.97580 0.98708 0.88667 1.21482 0.96367 1.01031 0.94819 1.21133 0.97185 0.98215 0.93641 1.22291 1.01508 0.98972 0.96307 1.22655 0.85283 0.99775 0.93899 1.87889 1.34751 1.58168 1.51755 1.22733 0.97753 0.89800 0.91638 1.22216 0.97248 1.02229 0.96774 1.22837 0.98333 0.96380 1.04025 1.22400 0.91991 1.01936 1.03702 0.93314 0.98336 0.93403 0.84351 0.96393 0.91514 0.91043 0.92785 0.90407 0.92196 0.90938 0.92193 0.88318 0.92212 0.87687 0.89502 0.91885 0.91105 0.89664 0.91281 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.94 12.65 21.45 0.27 -51.66 16 2 C 0.02 1.29 5.43 84.65 0.46 1.75 16 3 Si 0.95 43.19 29.54 68.60 2.03 45.21 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.50 -27.03 8.33 25.60 0.21 -26.82 16 8 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 9 C 0.02 1.05 1.65 -52.93 -0.09 0.97 16 10 C 0.12 5.38 5.54 86.30 0.48 5.86 16 11 N -0.68 -26.22 6.47 -513.89 -3.32 -29.55 16 12 C 0.06 1.80 5.44 86.30 0.47 2.27 16 13 C -0.10 -2.44 4.95 30.59 0.15 -2.29 16 14 C -0.08 -1.66 2.27 -10.68 -0.02 -1.68 16 15 C -0.15 -3.18 5.10 30.69 0.16 -3.02 16 16 C 0.06 1.12 6.84 72.01 0.49 1.61 16 17 O -0.41 -8.68 10.77 -148.98 -1.60 -10.29 16 18 C 0.06 0.93 6.84 72.01 0.49 1.43 16 19 C -0.15 -2.56 5.42 30.69 0.17 -2.39 16 20 C -0.18 -7.90 9.96 30.62 0.30 -7.60 16 21 C -0.16 -7.83 9.14 30.62 0.28 -7.55 16 22 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 23 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 24 H 0.05 2.01 8.08 -2.38 -0.02 1.99 16 25 H 0.34 13.82 8.31 -89.69 -0.74 13.07 16 26 H 0.02 0.56 6.66 -2.39 -0.02 0.55 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.56 6.75 -2.39 -0.02 1.54 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 42 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16 Total: -1.00 -59.26 333.87 1.14 -58.11 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.22 Total: 25.65 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 3.55 Total: -37.47 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -3.05 Total: -81.21 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.60 Total: -10.29 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -59.26 1.14 -58.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309179827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.174 kcal (2) G-P(sol) polarization free energy of solvation -59.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds