Wall clock time and date at job start Sun Mar 29 2020 23:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46760 * 2 1 4 4 C 1.52998 * 110.01728 * 304.19718 * 3 2 1 5 5 N 1.46499 * 109.47539 * 304.96226 * 4 3 2 6 6 C 1.34775 * 120.00351 * 174.69688 * 5 4 3 7 7 O 1.21284 * 119.99917 * 0.28047 * 6 5 4 8 8 C 1.50694 * 120.00150 * 180.27437 * 6 5 4 9 9 C 1.52994 * 109.47422 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47614 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99712 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00410 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00181 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99850 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.46927 * 89.99671 * 14 12 10 16 16 H 1.48500 * 109.47048 * 209.99764 * 14 12 10 17 17 H 1.48501 * 109.47198 * 329.99854 * 14 12 10 18 18 C 1.54261 * 110.03609 * 65.59210 * 3 2 1 19 19 C 1.54967 * 104.16363 * 95.75126 * 18 3 2 20 20 C 1.54893 * 102.77334 * 37.88852 * 19 18 3 21 21 C 1.53875 * 110.03005 * 182.81096 * 3 2 1 22 22 H 1.08993 * 109.47004 * 55.33430 * 1 2 3 23 23 H 1.09005 * 109.46939 * 175.33455 * 1 2 3 24 24 H 1.08995 * 109.47331 * 295.32765 * 1 2 3 25 25 H 1.08994 * 109.47374 * 240.00124 * 2 1 3 26 26 H 1.08999 * 109.47040 * 119.99667 * 2 1 3 27 27 H 1.08996 * 109.47238 * 184.95841 * 4 3 2 28 28 H 1.09002 * 109.46907 * 64.96185 * 4 3 2 29 29 H 0.97003 * 119.99426 * 354.98289 * 5 4 3 30 30 H 1.09009 * 109.47428 * 300.00648 * 8 6 5 31 31 H 1.09005 * 109.47176 * 60.00199 * 8 6 5 32 32 H 1.09001 * 109.47557 * 300.00427 * 9 8 6 33 33 H 1.09000 * 109.46909 * 60.00094 * 9 8 6 34 34 H 0.96994 * 119.99604 * 179.97438 * 13 12 10 35 35 H 1.09004 * 110.48879 * 214.40491 * 18 3 2 36 36 H 1.09004 * 110.48670 * 337.04389 * 18 3 2 37 37 H 1.08996 * 110.72029 * 279.57856 * 19 18 3 38 38 H 1.08999 * 110.92339 * 156.29712 * 19 18 3 39 39 H 1.09002 * 110.48664 * 203.40235 * 20 19 18 40 40 H 1.08999 * 110.48628 * 80.76003 * 20 19 18 41 41 H 1.08997 * 110.03393 * 359.94765 * 21 3 2 42 42 H 1.09001 * 110.03360 * 121.38409 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4527 2.2056 -1.1890 5 7 1.7565 1.4868 -2.4289 6 6 1.2460 1.9169 -3.5997 7 8 0.5392 2.9021 -3.6276 8 6 1.5535 1.1739 -4.8741 9 6 0.8573 1.8650 -6.0481 10 6 1.1643 1.1216 -7.3226 11 1 1.7928 0.2436 -7.2976 12 6 0.6419 1.5615 -8.5203 13 7 0.9103 0.9130 -9.6326 14 14 -0.4458 3.0796 -8.5635 15 1 0.3954 4.2855 -8.7722 16 1 -1.4215 2.9580 -9.6763 17 1 -1.1759 3.2022 -7.2762 18 6 1.6514 2.1404 1.3197 19 6 2.9067 1.9845 2.2149 20 6 4.0699 2.1658 1.2083 21 6 3.5770 1.4582 -0.0709 22 1 -0.3633 0.5845 -0.8452 23 1 -0.3633 -1.0243 -0.0836 24 1 -0.3634 0.4396 0.9288 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.8888 3.2036 -1.2314 28 1 0.3721 2.2860 -1.0712 29 1 2.3218 0.6988 -2.4065 30 1 2.6306 1.1703 -5.0419 31 1 1.1953 0.1476 -4.7919 32 1 -0.2198 1.8689 -5.8807 33 1 1.2159 2.8910 -6.1302 34 1 0.5425 1.2224 -10.4751 35 1 1.4362 3.1946 1.1449 36 1 0.7935 1.6454 1.7749 37 1 2.9377 0.9929 2.6664 38 1 2.9360 2.7579 2.9824 39 1 4.9761 1.6896 1.5826 40 1 4.2458 3.2240 1.0151 41 1 3.9596 0.4382 -0.1044 42 1 3.9045 2.0095 -0.9523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330887999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:49 Heat of formation + Delta-G solvation = -75.792633 kcal Electronic energy + Delta-G solvation = -19100.373942 eV Core-core repulsion = 16271.754360 eV Total energy + Delta-G solvation = -2828.619581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13893 -38.59251 -34.56048 -33.43959 -32.74024 -31.25236 -29.13846 -28.73019 -26.40813 -24.68558 -23.14989 -21.26290 -20.62024 -19.64735 -18.64004 -17.22509 -16.31986 -15.99225 -15.56624 -15.27411 -14.91796 -14.37073 -14.07086 -13.80033 -13.47388 -13.13447 -12.79613 -12.76555 -12.53197 -12.10519 -11.83626 -11.69221 -11.38538 -11.33682 -11.19847 -10.93859 -10.80713 -10.72510 -10.60895 -10.48983 -10.12218 -10.01156 -9.75766 -9.19449 -9.12103 -8.77074 -8.48436 -6.01015 -3.99489 3.19847 3.39702 3.46003 3.54602 3.57571 4.29138 4.31255 4.41210 4.53051 4.92023 4.94625 5.00883 5.06567 5.21588 5.34616 5.36567 5.40448 5.43733 5.48632 5.50261 5.62852 5.67131 5.75272 5.80073 5.85591 5.91097 5.94647 6.04831 6.08364 6.12146 6.13876 6.18598 6.28349 6.70738 6.75050 7.39983 7.47016 7.80205 7.86870 8.52952 8.72938 9.02340 9.62302 11.11880 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.039431 B = 0.003966 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.935392 B = 7058.105499 C = 7068.465050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C -0.073 4.073 4 C 0.130 3.870 5 N -0.739 5.739 6 C 0.508 3.492 7 O -0.543 6.543 8 C -0.123 4.123 9 C 0.002 3.998 10 C -0.524 4.524 11 H 0.072 0.928 12 C 0.069 3.931 13 N -0.904 5.904 14 Si 0.877 3.123 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.261 1.261 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.121 4.121 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.397 0.603 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.023 0.977 33 H 0.018 0.982 34 H 0.263 0.737 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 -0.905 25.022 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.146 4.146 3 C -0.073 4.073 4 C 0.006 3.994 5 N -0.393 5.393 6 C 0.297 3.703 7 O -0.419 6.419 8 C -0.163 4.163 9 C -0.036 4.036 10 C -0.562 4.562 11 H 0.090 0.910 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.705 3.295 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.185 1.185 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.162 4.162 21 C -0.158 4.158 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.232 0.768 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.906 -0.177 24.793 25.100 hybrid contribution -0.231 0.355 -0.162 0.454 sum 3.675 0.178 24.631 24.904 Atomic orbital electron populations 1.21905 0.95678 1.01809 1.02166 1.21579 0.96228 0.94989 1.01813 1.21481 0.95298 0.95773 0.94780 1.21399 1.00402 0.94919 0.82674 1.46186 1.53752 1.32417 1.06913 1.21502 0.78650 0.84811 0.85348 1.90648 1.37469 1.26866 1.86952 1.21658 1.02770 1.00137 0.91693 1.19359 0.96178 0.95960 0.92116 1.21127 1.31626 1.13258 0.90199 0.90967 1.24974 0.95954 0.96828 0.95507 1.69913 1.45494 1.40404 0.98523 0.86794 0.81072 0.83593 0.78091 1.20251 1.21457 1.18531 1.22469 0.98037 1.00645 0.94111 1.22484 0.94753 1.01444 0.97399 1.22345 0.97900 1.00632 0.95278 1.22331 0.93973 1.01048 0.98486 0.91923 0.92821 0.92723 0.91820 0.91844 0.92208 0.91386 0.76835 0.89754 0.89720 0.95867 0.96319 0.92746 0.91278 0.91017 0.91626 0.91722 0.91836 0.91681 0.91498 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.35 37.16 0.35 -1.10 16 2 C -0.11 -0.91 4.44 -26.73 -0.12 -1.03 16 3 C -0.07 -0.64 0.41 -153.40 -0.06 -0.70 16 4 C 0.13 1.56 3.60 -4.04 -0.01 1.55 16 5 N -0.74 -9.92 4.97 -60.30 -0.30 -10.22 16 6 C 0.51 9.39 7.83 -10.99 -0.09 9.31 16 7 O -0.54 -12.28 15.98 5.55 0.09 -12.19 16 8 C -0.12 -2.42 5.64 -27.89 -0.16 -2.57 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 10 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 11 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 14 Si 0.88 22.87 27.47 -169.99 -4.67 18.20 16 15 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 18 C -0.11 -0.91 5.74 -25.03 -0.14 -1.05 16 19 C -0.12 -0.85 6.91 -24.69 -0.17 -1.02 16 20 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16 21 C -0.12 -1.00 5.71 -25.61 -0.15 -1.14 16 22 H 0.06 0.70 6.25 -51.93 -0.32 0.38 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.45 6.54 -51.93 -0.34 0.11 16 25 H 0.06 0.54 6.86 -51.93 -0.36 0.18 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.90 6.59 -51.93 -0.34 0.56 16 29 H 0.40 4.34 6.98 -40.82 -0.28 4.06 16 30 H 0.08 1.54 8.14 -51.92 -0.42 1.11 16 31 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 33 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.07 0.57 7.85 -51.93 -0.41 0.17 16 36 H 0.07 0.54 6.17 -51.93 -0.32 0.22 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 42 H 0.07 0.65 7.58 -51.93 -0.39 0.26 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -33.32 324.81 -7.78 -41.10 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -7.32 Total: -1.80 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -1.25 Total: -12.47 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.47 Total: -37.73 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.67 Total: 18.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.32 -7.78 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330887999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.693 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds