Wall clock time and date at job start Sun Mar 29 2020 23:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46760 * 2 1 4 4 C 1.52998 * 110.01728 * 304.19718 * 3 2 1 5 5 N 1.46499 * 109.47539 * 304.96226 * 4 3 2 6 6 C 1.34775 * 120.00351 * 174.69688 * 5 4 3 7 7 O 1.21284 * 119.99917 * 0.28047 * 6 5 4 8 8 C 1.50694 * 120.00150 * 180.27437 * 6 5 4 9 9 C 1.52994 * 109.47422 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47614 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99712 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00410 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00181 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99850 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.46927 * 89.99671 * 14 12 10 16 16 H 1.48500 * 109.47048 * 209.99764 * 14 12 10 17 17 H 1.48501 * 109.47198 * 329.99854 * 14 12 10 18 18 C 1.54261 * 110.03609 * 65.59210 * 3 2 1 19 19 C 1.54967 * 104.16363 * 95.75126 * 18 3 2 20 20 C 1.54893 * 102.77334 * 37.88852 * 19 18 3 21 21 C 1.53875 * 110.03005 * 182.81096 * 3 2 1 22 22 H 1.08993 * 109.47004 * 55.33430 * 1 2 3 23 23 H 1.09005 * 109.46939 * 175.33455 * 1 2 3 24 24 H 1.08995 * 109.47331 * 295.32765 * 1 2 3 25 25 H 1.08994 * 109.47374 * 240.00124 * 2 1 3 26 26 H 1.08999 * 109.47040 * 119.99667 * 2 1 3 27 27 H 1.08996 * 109.47238 * 184.95841 * 4 3 2 28 28 H 1.09002 * 109.46907 * 64.96185 * 4 3 2 29 29 H 0.97003 * 119.99426 * 354.98289 * 5 4 3 30 30 H 1.09009 * 109.47428 * 300.00648 * 8 6 5 31 31 H 1.09005 * 109.47176 * 60.00199 * 8 6 5 32 32 H 1.09001 * 109.47557 * 300.00427 * 9 8 6 33 33 H 1.09000 * 109.46909 * 60.00094 * 9 8 6 34 34 H 0.96994 * 119.99604 * 179.97438 * 13 12 10 35 35 H 1.09004 * 110.48879 * 214.40491 * 18 3 2 36 36 H 1.09004 * 110.48670 * 337.04389 * 18 3 2 37 37 H 1.08996 * 110.72029 * 279.57856 * 19 18 3 38 38 H 1.08999 * 110.92339 * 156.29712 * 19 18 3 39 39 H 1.09002 * 110.48664 * 203.40235 * 20 19 18 40 40 H 1.08999 * 110.48628 * 80.76003 * 20 19 18 41 41 H 1.08997 * 110.03393 * 359.94765 * 21 3 2 42 42 H 1.09001 * 110.03360 * 121.38409 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4527 2.2056 -1.1890 5 7 1.7565 1.4868 -2.4289 6 6 1.2460 1.9169 -3.5997 7 8 0.5392 2.9021 -3.6276 8 6 1.5535 1.1739 -4.8741 9 6 0.8573 1.8650 -6.0481 10 6 1.1643 1.1216 -7.3226 11 1 1.7928 0.2436 -7.2976 12 6 0.6419 1.5615 -8.5203 13 7 0.9103 0.9130 -9.6326 14 14 -0.4458 3.0796 -8.5635 15 1 0.3954 4.2855 -8.7722 16 1 -1.4215 2.9580 -9.6763 17 1 -1.1759 3.2022 -7.2762 18 6 1.6514 2.1404 1.3197 19 6 2.9067 1.9845 2.2149 20 6 4.0699 2.1658 1.2083 21 6 3.5770 1.4582 -0.0709 22 1 -0.3633 0.5845 -0.8452 23 1 -0.3633 -1.0243 -0.0836 24 1 -0.3634 0.4396 0.9288 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.8888 3.2036 -1.2314 28 1 0.3721 2.2860 -1.0712 29 1 2.3218 0.6988 -2.4065 30 1 2.6306 1.1703 -5.0419 31 1 1.1953 0.1476 -4.7919 32 1 -0.2198 1.8689 -5.8807 33 1 1.2159 2.8910 -6.1302 34 1 0.5425 1.2224 -10.4751 35 1 1.4362 3.1946 1.1449 36 1 0.7935 1.6454 1.7749 37 1 2.9377 0.9929 2.6664 38 1 2.9360 2.7579 2.9824 39 1 4.9761 1.6896 1.5826 40 1 4.2458 3.2240 1.0151 41 1 3.9596 0.4382 -0.1044 42 1 3.9045 2.0095 -0.9523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330887999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:48 Heat of formation + Delta-G solvation = -96.677642 kcal Electronic energy + Delta-G solvation = -19101.279584 eV Core-core repulsion = 16271.754360 eV Total energy + Delta-G solvation = -2829.525223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.17069 -39.78961 -35.71327 -35.45454 -33.68321 -33.21036 -30.01676 -29.48134 -28.03196 -25.85791 -23.94872 -22.94352 -21.47371 -20.99359 -19.54239 -19.09966 -17.68062 -17.06587 -16.80269 -16.40094 -16.22758 -15.88203 -15.30605 -14.89159 -14.66446 -14.48887 -14.22509 -14.01262 -13.52499 -13.40622 -13.21157 -12.88461 -12.60264 -12.41260 -12.10838 -11.97207 -11.93246 -11.79931 -11.76749 -11.44860 -11.40494 -11.36592 -11.32994 -11.21237 -10.78631 -10.72410 -10.02278 -8.32071 -6.34862 1.32600 1.34384 1.49804 1.71130 2.30531 2.34605 3.03588 3.58799 3.62207 3.73036 4.03975 4.21610 4.31327 4.33662 4.36914 4.41618 4.48713 4.57397 4.63434 4.69138 4.79218 4.81845 4.86500 4.98862 5.02033 5.09999 5.11977 5.16223 5.24523 5.30520 5.32119 5.35092 5.44251 5.49735 5.51139 5.52646 5.58962 5.61289 6.23172 6.61179 6.71428 7.30568 7.33507 8.83642 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.039431 B = 0.003966 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.935392 B = 7058.105499 C = 7068.465050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 C -0.064 4.064 4 C 0.130 3.870 5 N -0.714 5.714 6 C 0.513 3.487 7 O -0.589 6.589 8 C -0.117 4.117 9 C 0.005 3.995 10 C -0.529 4.529 11 H 0.050 0.950 12 C 0.014 3.986 13 N -0.943 5.943 14 Si 0.938 3.062 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.263 1.263 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.121 4.121 22 H 0.037 0.963 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.413 0.587 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.009 0.991 33 H 0.007 0.993 34 H 0.267 0.733 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.928 -1.134 27.135 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C -0.065 4.065 4 C 0.007 3.993 5 N -0.367 5.367 6 C 0.301 3.699 7 O -0.470 6.470 8 C -0.157 4.157 9 C -0.033 4.033 10 C -0.567 4.567 11 H 0.069 0.931 12 C -0.184 4.184 13 N -0.584 5.584 14 Si 0.763 3.237 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.158 4.158 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.250 0.750 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.404 -0.441 26.943 27.304 hybrid contribution -0.329 0.363 -0.782 0.923 sum 4.075 -0.078 26.161 26.477 Atomic orbital electron populations 1.21890 0.96344 1.01670 1.01580 1.21592 0.95553 0.94542 1.02716 1.21435 0.95665 0.95777 0.93593 1.21510 0.99892 0.94928 0.82989 1.45928 1.52297 1.32353 1.06083 1.21179 0.78453 0.84079 0.86216 1.90633 1.39839 1.28869 1.87639 1.21495 1.03235 1.00438 0.90534 1.19212 0.95808 0.95433 0.92800 1.21434 1.30744 1.12712 0.91810 0.93124 1.25797 0.97473 0.99792 0.95314 1.70021 1.46950 1.42173 0.99242 0.85832 0.79546 0.80204 0.78151 1.19357 1.20229 1.18733 1.22483 0.98967 1.00153 0.93751 1.22472 0.93605 1.02301 0.97171 1.22352 0.98581 1.00281 0.94951 1.22334 0.93264 1.01733 0.98506 0.94375 0.92402 0.91800 0.91795 0.90038 0.93254 0.92616 0.74996 0.88034 0.88047 0.97291 0.97418 0.92355 0.92040 0.90355 0.90621 0.91012 0.90763 0.92304 0.90251 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.35 71.98 0.67 -1.94 16 2 C -0.11 -1.51 4.44 30.59 0.14 -1.37 16 3 C -0.06 -1.00 0.41 -51.46 -0.02 -1.02 16 4 C 0.13 3.03 3.60 86.38 0.31 3.34 16 5 N -0.71 -18.29 4.97 -463.07 -2.30 -20.59 16 6 C 0.51 18.61 7.83 87.66 0.69 19.29 16 7 O -0.59 -26.78 15.98 -3.04 -0.05 -26.83 16 8 C -0.12 -4.52 5.64 29.84 0.17 -4.35 16 9 C 0.01 0.28 3.33 29.85 0.10 0.38 16 10 C -0.53 -30.92 9.66 25.60 0.25 -30.68 16 11 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 12 C 0.01 0.84 5.47 84.65 0.46 1.30 16 13 N -0.94 -59.53 13.96 21.45 0.30 -59.23 16 14 Si 0.94 47.40 27.47 68.60 1.88 49.29 16 15 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 16 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 17 H -0.26 -13.28 6.54 99.48 0.65 -12.63 16 18 C -0.12 -1.59 5.74 31.69 0.18 -1.41 16 19 C -0.12 -1.31 6.91 31.91 0.22 -1.09 16 20 C -0.12 -1.54 6.83 31.67 0.22 -1.32 16 21 C -0.12 -1.71 5.71 31.32 0.18 -1.54 16 22 H 0.04 0.82 6.25 -2.39 -0.01 0.80 16 23 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.06 0.92 6.54 -2.39 -0.02 0.91 16 25 H 0.06 0.91 6.86 -2.39 -0.02 0.89 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.47 6.59 -2.39 -0.02 1.46 16 29 H 0.41 8.14 6.98 -92.71 -0.65 7.50 16 30 H 0.10 3.55 8.14 -2.38 -0.02 3.53 16 31 H 0.10 3.55 8.14 -2.38 -0.02 3.53 16 32 H 0.01 0.47 7.16 -2.39 -0.02 0.45 16 33 H 0.01 0.39 7.53 -2.39 -0.02 0.37 16 34 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.06 0.95 7.85 -2.39 -0.02 0.93 16 36 H 0.08 0.98 6.17 -2.39 -0.01 0.97 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 0.95 7.67 -2.39 -0.02 0.93 16 42 H 0.06 0.97 7.58 -2.39 -0.02 0.95 16 Total: -1.00 -71.88 324.81 3.68 -68.20 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.28 Total: 9.56 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 3.56 Total: -20.40 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -2.00 Total: -79.82 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.05 Total: -26.83 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.88 Total: 49.29 kcal Total: -71.88 3.68 -68.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330887999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.473 kcal (2) G-P(sol) polarization free energy of solvation -71.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds