Wall clock time and date at job start Sun Mar 29 2020 23:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 108.79799 * 2 1 4 4 O 1.21291 * 119.99883 * 118.55559 * 3 2 1 5 5 N 1.34779 * 120.00328 * 298.56418 * 3 2 1 6 6 C 1.46499 * 120.00050 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46841 * 179.97438 * 6 5 3 8 8 C 1.50701 * 109.47062 * 179.97438 * 7 6 5 9 9 H 1.08006 * 120.00020 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00179 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00313 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99998 * 359.97438 * 10 8 7 13 13 H 1.48495 * 109.46818 * 90.00121 * 12 10 8 14 14 H 1.48492 * 109.47051 * 210.00320 * 12 10 8 15 15 H 1.48499 * 109.46903 * 330.00783 * 12 10 8 16 16 C 1.54248 * 108.89334 * 241.44259 * 2 1 3 17 17 C 1.50476 * 108.52488 * 159.26814 * 16 2 1 18 18 C 1.54061 * 112.50196 * 94.14853 * 17 16 2 19 19 C 1.54076 * 112.81691 * 318.28597 * 18 17 16 20 20 C 1.50473 * 112.49469 * 318.28258 * 19 18 17 21 21 C 1.45546 * 108.89610 * 118.56393 * 2 1 3 22 22 H 1.09001 * 109.46685 * 301.44088 * 1 2 3 23 23 H 1.09000 * 109.46831 * 61.43488 * 1 2 3 24 24 H 1.08991 * 109.47720 * 181.43794 * 1 2 3 25 25 H 0.97000 * 119.99765 * 359.97438 * 5 3 2 26 26 H 1.08998 * 109.47061 * 299.99516 * 6 5 3 27 27 H 1.09009 * 109.47070 * 59.99815 * 6 5 3 28 28 H 1.08998 * 109.47398 * 299.99922 * 7 6 5 29 29 H 1.09009 * 109.46939 * 60.00347 * 7 6 5 30 30 H 0.97003 * 120.00321 * 179.97438 * 11 10 8 31 31 H 1.08999 * 109.62878 * 278.97435 * 16 2 1 32 32 H 1.08993 * 109.62768 * 39.56068 * 16 2 1 33 33 H 1.09003 * 108.87444 * 333.36987 * 17 16 2 34 34 H 1.09000 * 108.87638 * 214.93107 * 17 16 2 35 35 H 1.08997 * 108.81642 * 197.42430 * 18 17 16 36 36 H 1.08999 * 108.81386 * 79.14549 * 18 17 16 37 37 H 1.08998 * 108.87551 * 197.50492 * 19 18 17 38 38 H 1.09003 * 108.87551 * 79.06185 * 19 18 17 39 39 H 1.08999 * 109.62748 * 334.44410 * 20 19 18 40 40 H 1.08997 * 109.62546 * 213.86492 * 20 19 18 41 41 H 1.09003 * 108.89162 * 303.43479 * 21 2 1 42 42 H 1.08996 * 108.89491 * 61.92938 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0156 1.4266 0.0000 4 8 2.6863 1.8389 0.9226 5 7 1.7044 2.2444 -1.0251 6 6 2.1760 3.6314 -1.0248 7 6 1.6881 4.3363 -2.2921 8 6 2.1727 5.7632 -2.2915 9 1 2.7694 6.1306 -1.4696 10 6 1.8543 6.5999 -3.3401 11 7 2.2776 7.8450 -3.3398 12 14 0.8228 5.9644 -4.7620 13 1 -0.6155 6.1908 -4.4700 14 1 1.1952 6.6863 -6.0050 15 1 1.0686 4.5109 -4.9410 16 6 2.0294 -0.6976 -1.2818 17 6 3.4467 -0.2637 -1.5410 18 6 4.4802 -1.2411 -0.9493 19 6 4.0933 -1.7414 0.4556 20 6 3.5393 -0.6451 1.3248 21 6 2.0013 -0.6584 1.2094 22 1 -0.3633 0.5361 0.8768 23 1 -0.3633 0.4914 -0.9026 24 1 -0.3634 -1.0272 0.0258 25 1 1.1682 1.9146 -1.7631 26 1 1.7853 4.1478 -0.1480 27 1 3.2657 3.6447 -0.9987 28 1 2.0792 3.8197 -3.1686 29 1 0.5984 4.3230 -2.3185 30 1 2.0539 8.4335 -4.0778 31 1 1.9965 -1.7787 -1.1469 32 1 1.3992 -0.4114 -2.1237 33 1 3.6002 0.7213 -1.1002 34 1 3.6030 -0.1943 -2.6176 35 1 5.4456 -0.7385 -0.8900 36 1 4.5735 -2.0993 -1.6147 37 1 4.9772 -2.1602 0.9366 38 1 3.3431 -2.5259 0.3564 39 1 3.9234 0.3180 0.9888 40 1 3.8303 -0.8172 2.3610 41 1 1.5780 -0.1502 2.0758 42 1 1.6565 -1.6924 1.2057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332050143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:08 Heat of formation + Delta-G solvation = -66.098250 kcal Electronic energy + Delta-G solvation = -19880.231738 eV Core-core repulsion = 17052.032537 eV Total energy + Delta-G solvation = -2828.199201 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04321 -37.35871 -35.02812 -33.98506 -32.86793 -32.00563 -29.95841 -27.73236 -25.22994 -24.85743 -23.28605 -22.11951 -20.75805 -19.49099 -18.80749 -16.89776 -16.62845 -15.83437 -15.34514 -15.13205 -14.49053 -14.25684 -14.12171 -13.75720 -13.39867 -13.00354 -12.71733 -12.62596 -12.51655 -12.33297 -12.15320 -11.90741 -11.48682 -11.38253 -11.15140 -10.68893 -10.55712 -10.43575 -10.37459 -10.29990 -10.19092 -10.13110 -9.96063 -9.37863 -9.07933 -8.63130 -8.44499 -6.11141 -4.11124 2.98740 3.24684 3.32376 3.33580 3.62778 4.37453 4.57143 4.59949 4.67304 4.97478 5.04061 5.08951 5.21860 5.22513 5.25257 5.32589 5.51911 5.53322 5.63859 5.76892 5.82798 5.83813 5.94808 6.07061 6.14111 6.15479 6.17371 6.19253 6.22713 6.28037 6.29051 6.40495 6.57382 6.64760 6.84926 7.15797 7.24109 7.67246 7.96648 8.44015 8.64335 8.93382 9.49147 11.01984 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.004984 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.748683 B = 5616.505729 C = 5622.395007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C 0.519 3.481 4 O -0.543 6.543 5 N -0.726 5.726 6 C 0.130 3.870 7 C -0.022 4.022 8 C -0.522 4.522 9 H 0.075 0.925 10 C 0.069 3.931 11 N -0.899 5.899 12 Si 0.881 3.119 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.266 1.266 16 C -0.102 4.102 17 C -0.132 4.132 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.127 4.127 21 C -0.094 4.094 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.394 0.606 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.021 0.979 29 H 0.016 0.984 30 H 0.264 0.736 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 -21.235 4.076 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 C 0.305 3.695 4 O -0.422 6.422 5 N -0.376 5.376 6 C 0.008 3.992 7 C -0.059 4.059 8 C -0.560 4.560 9 H 0.093 0.907 10 C -0.132 4.132 11 N -0.537 5.537 12 Si 0.709 3.291 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.191 1.191 16 C -0.140 4.140 17 C -0.170 4.170 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.164 4.164 21 C -0.132 4.132 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.228 0.772 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.461 -20.731 4.632 21.292 hybrid contribution -0.824 -0.256 -1.218 1.493 sum -2.285 -20.986 3.413 21.385 Atomic orbital electron populations 1.21967 0.92973 1.02507 1.02690 1.19818 0.96995 0.93214 0.97992 1.20401 0.79759 0.87258 0.82047 1.90644 1.39047 1.76681 1.35791 1.46390 1.54682 1.13434 1.23126 1.21472 0.98986 0.78472 1.00297 1.19786 0.96392 0.96969 0.92786 1.20928 1.34140 0.93194 1.07788 0.90670 1.24996 0.95557 0.94671 0.98022 1.69905 1.45829 1.05584 1.32405 0.86760 0.80828 0.79417 0.82125 1.20232 1.21272 1.19096 1.21409 0.96483 1.00667 0.95404 1.21503 0.94301 1.00218 1.00937 1.21883 0.98651 0.98588 0.96049 1.21387 1.00415 0.98429 0.95300 1.21520 0.94795 1.00935 0.99146 1.20293 0.96835 0.99669 0.96420 0.92090 0.91985 0.91663 0.77238 0.92123 0.92123 0.96065 0.96530 0.92565 0.90721 0.91311 0.91043 0.91901 0.92380 0.92645 0.92770 0.92566 0.88898 0.92421 0.91737 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.12 37.16 0.30 -1.14 16 2 C -0.08 -0.91 0.54 -158.53 -0.09 -0.99 16 3 C 0.52 8.25 3.69 -10.99 -0.04 8.21 16 4 O -0.54 -10.56 13.67 5.55 0.08 -10.49 16 5 N -0.73 -11.86 5.03 -60.29 -0.30 -12.16 16 6 C 0.13 2.65 5.61 -4.04 -0.02 2.63 16 7 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 8 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 9 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 10 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 11 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 12 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 16 C -0.10 -1.04 4.43 -27.34 -0.12 -1.17 16 17 C -0.13 -1.56 5.11 -27.44 -0.14 -1.70 16 18 C -0.11 -1.22 5.85 -25.62 -0.15 -1.37 16 19 C -0.12 -1.22 5.31 -27.43 -0.15 -1.36 16 20 C -0.13 -1.57 5.20 -27.35 -0.14 -1.71 16 21 C -0.09 -1.10 3.57 -29.60 -0.11 -1.20 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.39 5.52 7.64 -40.82 -0.31 5.21 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 28 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 29 H 0.02 0.37 7.57 -51.92 -0.39 -0.03 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.07 0.66 6.98 -51.93 -0.36 0.30 16 32 H 0.07 0.64 7.82 -51.93 -0.41 0.23 16 33 H 0.07 1.06 4.75 -51.93 -0.25 0.81 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.52 6.63 -51.93 -0.34 0.17 16 39 H 0.09 1.44 4.54 -51.93 -0.24 1.21 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.82 8.03 -51.93 -0.42 0.40 16 42 H 0.06 0.59 7.47 -51.93 -0.39 0.20 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -31.03 313.36 -7.86 -38.89 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.26 Total: 2.80 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -1.20 Total: -13.50 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.47 Total: -38.79 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.03 -7.86 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332050143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.211 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds