Wall clock time and date at job start Sun Mar 29 2020 23:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 108.79799 * 2 1 4 4 O 1.21291 * 119.99883 * 118.55559 * 3 2 1 5 5 N 1.34779 * 120.00328 * 298.56418 * 3 2 1 6 6 C 1.46499 * 120.00050 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46841 * 179.97438 * 6 5 3 8 8 C 1.50701 * 109.47062 * 179.97438 * 7 6 5 9 9 H 1.08006 * 120.00020 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00179 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00313 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99998 * 359.97438 * 10 8 7 13 13 H 1.48495 * 109.46818 * 90.00121 * 12 10 8 14 14 H 1.48492 * 109.47051 * 210.00320 * 12 10 8 15 15 H 1.48499 * 109.46903 * 330.00783 * 12 10 8 16 16 C 1.54248 * 108.89334 * 241.44259 * 2 1 3 17 17 C 1.50476 * 108.52488 * 159.26814 * 16 2 1 18 18 C 1.54061 * 112.50196 * 94.14853 * 17 16 2 19 19 C 1.54076 * 112.81691 * 318.28597 * 18 17 16 20 20 C 1.50473 * 112.49469 * 318.28258 * 19 18 17 21 21 C 1.45546 * 108.89610 * 118.56393 * 2 1 3 22 22 H 1.09001 * 109.46685 * 301.44088 * 1 2 3 23 23 H 1.09000 * 109.46831 * 61.43488 * 1 2 3 24 24 H 1.08991 * 109.47720 * 181.43794 * 1 2 3 25 25 H 0.97000 * 119.99765 * 359.97438 * 5 3 2 26 26 H 1.08998 * 109.47061 * 299.99516 * 6 5 3 27 27 H 1.09009 * 109.47070 * 59.99815 * 6 5 3 28 28 H 1.08998 * 109.47398 * 299.99922 * 7 6 5 29 29 H 1.09009 * 109.46939 * 60.00347 * 7 6 5 30 30 H 0.97003 * 120.00321 * 179.97438 * 11 10 8 31 31 H 1.08999 * 109.62878 * 278.97435 * 16 2 1 32 32 H 1.08993 * 109.62768 * 39.56068 * 16 2 1 33 33 H 1.09003 * 108.87444 * 333.36987 * 17 16 2 34 34 H 1.09000 * 108.87638 * 214.93107 * 17 16 2 35 35 H 1.08997 * 108.81642 * 197.42430 * 18 17 16 36 36 H 1.08999 * 108.81386 * 79.14549 * 18 17 16 37 37 H 1.08998 * 108.87551 * 197.50492 * 19 18 17 38 38 H 1.09003 * 108.87551 * 79.06185 * 19 18 17 39 39 H 1.08999 * 109.62748 * 334.44410 * 20 19 18 40 40 H 1.08997 * 109.62546 * 213.86492 * 20 19 18 41 41 H 1.09003 * 108.89162 * 303.43479 * 21 2 1 42 42 H 1.08996 * 108.89491 * 61.92938 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0156 1.4266 0.0000 4 8 2.6863 1.8389 0.9226 5 7 1.7044 2.2444 -1.0251 6 6 2.1760 3.6314 -1.0248 7 6 1.6881 4.3363 -2.2921 8 6 2.1727 5.7632 -2.2915 9 1 2.7694 6.1306 -1.4696 10 6 1.8543 6.5999 -3.3401 11 7 2.2776 7.8450 -3.3398 12 14 0.8228 5.9644 -4.7620 13 1 -0.6155 6.1908 -4.4700 14 1 1.1952 6.6863 -6.0050 15 1 1.0686 4.5109 -4.9410 16 6 2.0294 -0.6976 -1.2818 17 6 3.4467 -0.2637 -1.5410 18 6 4.4802 -1.2411 -0.9493 19 6 4.0933 -1.7414 0.4556 20 6 3.5393 -0.6451 1.3248 21 6 2.0013 -0.6584 1.2094 22 1 -0.3633 0.5361 0.8768 23 1 -0.3633 0.4914 -0.9026 24 1 -0.3634 -1.0272 0.0258 25 1 1.1682 1.9146 -1.7631 26 1 1.7853 4.1478 -0.1480 27 1 3.2657 3.6447 -0.9987 28 1 2.0792 3.8197 -3.1686 29 1 0.5984 4.3230 -2.3185 30 1 2.0539 8.4335 -4.0778 31 1 1.9965 -1.7787 -1.1469 32 1 1.3992 -0.4114 -2.1237 33 1 3.6002 0.7213 -1.1002 34 1 3.6030 -0.1943 -2.6176 35 1 5.4456 -0.7385 -0.8900 36 1 4.5735 -2.0993 -1.6147 37 1 4.9772 -2.1602 0.9366 38 1 3.3431 -2.5259 0.3564 39 1 3.9234 0.3180 0.9888 40 1 3.8303 -0.8172 2.3610 41 1 1.5780 -0.1502 2.0758 42 1 1.6565 -1.6924 1.2057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332050143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:07 Heat of formation + Delta-G solvation = -86.054004 kcal Electronic energy + Delta-G solvation = -19881.097084 eV Core-core repulsion = 17052.032537 eV Total energy + Delta-G solvation = -2829.064548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.14759 -38.53426 -36.62813 -35.06985 -34.63037 -33.10182 -31.72093 -28.54190 -27.04840 -25.70665 -24.29189 -23.43669 -22.48884 -20.54181 -19.91710 -18.97492 -17.74054 -17.01339 -16.59966 -16.27322 -16.23109 -15.51315 -15.43618 -15.04959 -14.66043 -14.54133 -13.89406 -13.64856 -13.52902 -13.35668 -13.24087 -13.02387 -12.96237 -12.82961 -12.31274 -12.17286 -12.10873 -11.77251 -11.53942 -11.52133 -11.39692 -11.27044 -11.19286 -11.03216 -10.79802 -10.41957 -9.93418 -8.31195 -6.38741 1.37936 1.40879 1.52181 1.74787 2.33565 2.35982 3.03877 3.56341 3.69969 3.83173 4.03229 4.21896 4.24380 4.29307 4.35817 4.39618 4.41137 4.49535 4.67622 4.73493 4.79163 4.84855 4.93828 5.01485 5.03344 5.08998 5.14869 5.25115 5.32009 5.34178 5.35498 5.38466 5.39548 5.40523 5.46691 5.54380 5.64940 5.73342 6.21129 6.65285 6.72527 7.25920 7.38120 8.85820 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.004984 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.748683 B = 5616.505729 C = 5622.395007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 C 0.516 3.484 4 O -0.586 6.586 5 N -0.718 5.718 6 C 0.147 3.853 7 C -0.011 4.011 8 C -0.540 4.540 9 H 0.026 0.974 10 C 0.005 3.995 11 N -0.951 5.951 12 Si 0.959 3.041 13 H -0.264 1.264 14 H -0.286 1.286 15 H -0.236 1.236 16 C -0.097 4.097 17 C -0.134 4.134 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.129 4.129 21 C -0.095 4.095 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.410 0.590 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.268 0.732 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -25.088 2.234 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C 0.305 3.695 4 O -0.467 6.467 5 N -0.369 5.369 6 C 0.023 3.977 7 C -0.048 4.048 8 C -0.579 4.579 9 H 0.044 0.956 10 C -0.192 4.192 11 N -0.591 5.591 12 Si 0.781 3.219 13 H -0.189 1.189 14 H -0.212 1.212 15 H -0.159 1.159 16 C -0.135 4.135 17 C -0.171 4.171 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.166 4.166 21 C -0.133 4.133 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.114 0.886 25 H 0.246 0.754 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.660 -24.623 2.795 25.050 hybrid contribution -0.025 1.020 -0.523 1.146 sum -3.684 -23.603 2.272 23.997 Atomic orbital electron populations 1.22004 0.90977 1.04484 1.02558 1.19861 0.98428 0.89591 0.99147 1.21333 0.78524 0.88899 0.80767 1.90634 1.40775 1.77833 1.37438 1.46141 1.54979 1.11631 1.24183 1.20939 0.97465 0.80813 0.98500 1.19629 0.97184 0.93907 0.94108 1.21258 1.33783 0.96211 1.06607 0.95606 1.26089 0.96996 0.94627 1.01523 1.70080 1.47754 1.07463 1.33838 0.85535 0.78848 0.80272 0.77219 1.18877 1.21186 1.15919 1.21466 0.95210 1.02003 0.94771 1.21518 0.96021 0.98632 1.00969 1.21894 0.97540 0.98966 0.96777 1.21351 1.01272 0.97934 0.94513 1.21470 0.95803 0.99883 0.99453 1.20345 0.95929 1.01331 0.95675 0.93382 0.91143 0.88555 0.75390 0.94325 0.94461 0.94574 0.94681 0.92306 0.87973 0.89551 0.94811 0.91375 0.94073 0.90354 0.92189 0.90192 0.92706 0.92671 0.93550 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.12 71.98 0.58 -1.75 16 2 C -0.07 -1.42 0.54 -54.78 -0.03 -1.45 16 3 C 0.52 16.36 3.69 87.66 0.32 16.69 16 4 O -0.59 -23.93 13.67 -3.06 -0.04 -23.97 16 5 N -0.72 -23.01 5.03 -463.04 -2.33 -25.34 16 6 C 0.15 6.19 5.61 86.38 0.48 6.67 16 7 C -0.01 -0.48 4.16 29.85 0.12 -0.35 16 8 C -0.54 -31.31 9.66 25.60 0.25 -31.06 16 9 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 10 C 0.00 0.27 5.47 84.65 0.46 0.73 16 11 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 12 Si 0.96 42.40 27.47 68.60 1.88 44.29 16 13 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 14 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 15 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 16 C -0.10 -1.60 4.43 30.20 0.13 -1.47 16 17 C -0.13 -2.91 5.11 30.14 0.15 -2.76 16 18 C -0.11 -2.21 5.85 31.32 0.18 -2.03 16 19 C -0.11 -2.06 5.31 30.14 0.16 -1.90 16 20 C -0.13 -3.12 5.20 30.20 0.16 -2.96 16 21 C -0.10 -2.01 3.57 28.74 0.10 -1.91 16 22 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.07 1.04 7.56 -2.39 -0.02 1.03 16 24 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.41 10.45 7.64 -92.71 -0.71 9.74 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 29 H 0.03 1.47 7.57 -2.38 -0.02 1.45 16 30 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 31 H 0.10 1.21 6.98 -2.39 -0.02 1.19 16 32 H 0.09 1.16 7.82 -2.39 -0.02 1.14 16 33 H 0.03 1.00 4.75 -2.39 -0.01 0.99 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.10 6.63 -2.39 -0.02 1.08 16 39 H 0.05 1.78 4.54 -2.39 -0.01 1.77 16 40 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 1.14 8.03 -2.39 -0.02 1.12 16 42 H 0.10 1.40 7.47 -2.39 -0.02 1.38 16 Total: -1.00 -72.09 313.36 3.12 -68.97 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.22 Total: 19.11 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 3.09 Total: -23.54 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -2.03 Total: -84.86 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.04 Total: -23.97 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.29 kcal Total: -72.09 3.12 -68.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332050143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.083 kcal (2) G-P(sol) polarization free energy of solvation -72.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds