Wall clock time and date at job start Mon Mar 30 2020 00:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 119.99647 * 2 1 4 4 O 1.21689 * 119.99920 * 180.02562 * 3 2 1 5 5 C 1.46370 * 120.00161 * 0.02562 * 3 2 1 6 6 H 1.08005 * 120.00095 * 0.02562 * 5 3 2 7 7 C 1.40049 * 120.00226 * 179.97438 * 5 3 2 8 8 N 1.30675 * 119.99665 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00177 * 180.27813 * 7 5 3 10 10 H 1.48502 * 109.46954 * 269.72256 * 9 7 5 11 11 H 1.48498 * 109.46839 * 29.72245 * 9 7 5 12 12 H 1.48496 * 109.47101 * 149.72464 * 9 7 5 13 13 C 1.46497 * 120.00382 * 180.02562 * 2 1 3 14 14 H 1.08996 * 110.01920 * 175.92627 * 13 2 1 15 15 C 1.54272 * 110.02992 * 297.36547 * 13 2 1 16 16 C 1.54889 * 104.19568 * 95.67390 * 15 13 2 17 17 C 1.54890 * 102.74758 * 37.94480 * 16 15 13 18 18 C 1.53872 * 110.03471 * 54.52863 * 13 2 1 19 19 H 1.09003 * 110.03358 * 0.02562 * 18 13 2 20 20 C 1.53004 * 110.03453 * 121.43036 * 18 13 2 21 21 C 1.53007 * 109.46731 * 54.88724 * 20 18 13 22 22 C 1.52996 * 109.47242 * 174.88629 * 20 18 13 23 23 C 1.52998 * 109.46966 * 294.89246 * 20 18 13 24 24 H 1.08996 * 109.47733 * 94.68309 * 1 2 3 25 25 H 1.09010 * 109.46875 * 214.67811 * 1 2 3 26 26 H 1.08996 * 109.47243 * 334.67225 * 1 2 3 27 27 H 0.96999 * 119.99762 * 180.02562 * 8 7 5 28 28 H 1.08996 * 110.48316 * 214.35221 * 15 13 2 29 29 H 1.09000 * 110.48564 * 336.99442 * 15 13 2 30 30 H 1.09002 * 110.75519 * 279.63103 * 16 15 13 31 31 H 1.09000 * 110.75526 * 156.25663 * 16 15 13 32 32 H 1.09002 * 110.48552 * 203.37909 * 17 16 15 33 33 H 1.08997 * 110.60013 * 80.79100 * 17 16 15 34 34 H 1.08997 * 109.46968 * 58.08865 * 21 20 18 35 35 H 1.08992 * 109.47115 * 178.09216 * 21 20 18 36 36 H 1.08998 * 109.47096 * 298.09507 * 21 20 18 37 37 H 1.09001 * 109.46948 * 60.00662 * 22 20 18 38 38 H 1.09000 * 109.46888 * 180.02562 * 22 20 18 39 39 H 1.08994 * 109.47115 * 300.00162 * 22 20 18 40 40 H 1.08996 * 109.47556 * 59.99563 * 23 20 18 41 41 H 1.09005 * 109.46913 * 180.02562 * 23 20 18 42 42 H 1.08998 * 109.46933 * 299.98750 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3557 1.1673 -0.0005 5 6 1.4069 2.4349 0.0006 6 1 0.3268 2.4348 0.0014 7 6 2.1070 3.6478 0.0011 8 7 3.4138 3.6478 0.0016 9 14 1.1730 5.2655 0.0097 10 1 0.9255 5.7015 -1.3881 11 1 -0.1245 5.0841 0.7088 12 1 1.9755 6.2967 0.7151 13 6 2.1975 -1.2687 -0.0006 14 1 3.2687 -1.0809 -0.0732 15 6 1.8848 -2.0600 1.2863 16 6 0.7486 -3.0272 0.8708 17 6 1.1569 -3.4369 -0.5661 18 6 1.7347 -2.1441 -1.1783 19 1 0.9652 -1.6249 -1.7497 20 6 2.9232 -2.4779 -2.0821 21 6 4.0325 -3.1227 -1.2485 22 6 2.4756 -3.4507 -3.1749 23 6 3.4502 -1.1942 -2.7265 24 1 -0.3634 -0.0839 -1.0242 25 1 -0.3633 -0.8452 0.5848 26 1 -0.3633 0.9288 0.4396 27 1 3.8987 4.4878 0.0024 28 1 2.7615 -2.6192 1.6127 29 1 1.5447 -1.3880 2.0742 30 1 -0.2133 -2.5144 0.8677 31 1 0.7220 -3.8967 1.5275 32 1 0.2855 -3.7697 -1.1300 33 1 1.9154 -4.2192 -0.5409 34 1 3.6472 -4.0188 -0.7621 35 1 4.8655 -3.3914 -1.8979 36 1 4.3748 -2.4172 -0.4914 37 1 1.6854 -2.9913 -3.7687 38 1 3.3225 -3.6888 -3.8184 39 1 2.1002 -4.3651 -2.7157 40 1 3.7691 -0.5013 -1.9479 41 1 4.2967 -1.4321 -3.3707 42 1 2.6601 -0.7350 -3.3204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335633991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:18 Heat of formation + Delta-G solvation = -55.402575 kcal Electronic energy + Delta-G solvation = -20541.803328 eV Core-core repulsion = 17714.067926 eV Total energy + Delta-G solvation = -2827.735402 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.73526 -36.90123 -34.88212 -32.81733 -32.34835 -28.58974 -27.54953 -26.95478 -26.56742 -25.92488 -24.79236 -21.01337 -20.49200 -18.76623 -17.58374 -16.50232 -15.87096 -15.30423 -15.05036 -14.30080 -14.13848 -13.80358 -13.60803 -13.00841 -12.79261 -12.29215 -12.11171 -11.97847 -11.76448 -11.54860 -11.37315 -11.26912 -11.17476 -11.03378 -10.99371 -10.79846 -10.63462 -10.48447 -10.33830 -10.26047 -10.03250 -9.89377 -9.83905 -9.67266 -8.81622 -7.49304 -7.06991 -6.15084 -4.59852 3.14980 3.22109 3.24955 4.11754 4.59539 4.63691 4.92615 5.00175 5.10849 5.34405 5.39120 5.44038 5.77430 5.81904 5.85054 5.89982 5.93254 5.99809 6.03008 6.06177 6.09728 6.16285 6.22183 6.24686 6.27052 6.30126 6.43472 6.45967 6.52761 6.54403 6.60016 6.68186 6.76545 6.87040 6.95804 7.09264 7.48626 7.75395 8.22236 8.46159 9.06598 9.51627 10.62787 10.82567 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.027781 B = 0.006803 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.626939 B = 4115.023350 C = 4519.152519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.637 5.637 3 C 0.559 3.441 4 O -0.578 6.578 5 C -0.545 4.545 6 H 0.071 0.929 7 C 0.088 3.912 8 N -0.767 5.767 9 Si 0.903 3.097 10 H -0.273 1.273 11 H -0.265 1.265 12 H -0.280 1.280 13 C 0.148 3.852 14 H 0.100 0.900 15 C -0.135 4.135 16 C -0.126 4.126 17 C -0.119 4.119 18 C -0.090 4.090 19 H 0.074 0.926 20 C -0.058 4.058 21 C -0.145 4.145 22 C -0.138 4.138 23 C -0.144 4.144 24 H 0.026 0.974 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.267 0.733 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.565 -12.122 -2.050 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.374 5.374 3 C 0.365 3.635 4 O -0.461 6.461 5 C -0.582 4.582 6 H 0.089 0.911 7 C -0.131 4.131 8 N -0.396 5.396 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.190 1.190 12 H -0.205 1.205 13 C 0.042 3.958 14 H 0.118 0.882 15 C -0.174 4.174 16 C -0.164 4.164 17 C -0.157 4.157 18 C -0.110 4.110 19 H 0.092 0.908 20 C -0.059 4.059 21 C -0.201 4.201 22 C -0.195 4.195 23 C -0.201 4.201 24 H 0.044 0.956 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.712 -11.989 -2.047 12.717 hybrid contribution -0.671 0.827 -0.073 1.068 sum -4.384 -11.162 -2.120 12.178 Atomic orbital electron populations 1.21468 0.82880 1.01456 0.99045 1.47940 1.04759 1.05088 1.79656 1.18201 0.86962 0.82280 0.76083 1.90573 1.13996 1.86282 1.55218 1.21027 0.93645 0.89423 1.54061 0.91110 1.25716 0.94575 1.00181 0.92664 1.70023 1.06983 1.27091 1.35516 0.86442 0.80222 0.81729 0.78781 1.19814 1.18953 1.20514 1.21386 0.98799 0.84155 0.91418 0.88197 1.22777 0.97828 0.97886 0.98919 1.22610 0.98947 0.98570 0.96233 1.22487 0.99798 0.97672 0.95744 1.22196 0.96785 0.95352 0.96636 0.90769 1.20491 0.95069 0.95464 0.94832 1.21989 0.97704 1.00490 0.99964 1.21879 1.00654 0.98837 0.98151 1.21915 0.99949 0.97045 1.01238 0.95566 0.93709 0.90998 0.92243 0.92023 0.91532 0.91431 0.92530 0.92542 0.91423 0.92791 0.93333 0.91896 0.93088 0.93254 0.92932 0.90404 0.93787 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 9.23 59.84 0.55 2.36 16 2 N -0.64 -14.31 2.71 -174.32 -0.47 -14.79 16 3 C 0.56 15.70 7.61 -12.99 -0.10 15.60 16 4 O -0.58 -18.25 13.86 5.20 0.07 -18.17 16 5 C -0.54 -15.29 8.75 -35.63 -0.31 -15.60 16 6 H 0.07 1.83 5.90 -52.48 -0.31 1.52 16 7 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 8 N -0.77 -22.92 11.83 55.55 0.66 -22.27 16 9 Si 0.90 20.20 29.56 -169.99 -5.02 15.18 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 13 C 0.15 2.85 1.95 -66.81 -0.13 2.72 16 14 H 0.10 2.23 3.80 -51.93 -0.20 2.03 16 15 C -0.14 -2.24 6.06 -25.07 -0.15 -2.39 16 16 C -0.13 -1.70 6.52 -24.74 -0.16 -1.86 16 17 C -0.12 -1.57 5.05 -25.07 -0.13 -1.69 16 18 C -0.09 -1.44 1.76 -89.50 -0.16 -1.60 16 19 H 0.07 1.29 6.85 -51.93 -0.36 0.94 16 20 C -0.06 -0.88 0.52 -154.51 -0.08 -0.96 16 21 C -0.14 -2.05 7.92 37.16 0.29 -1.76 16 22 C -0.14 -1.74 8.20 37.16 0.30 -1.43 16 23 C -0.14 -2.57 8.28 37.16 0.31 -2.27 16 24 H 0.03 0.47 7.61 -51.93 -0.40 0.07 16 25 H 0.04 0.72 4.99 -51.92 -0.26 0.46 16 26 H 0.07 1.42 5.84 -51.93 -0.30 1.11 16 27 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 30 H 0.07 0.91 5.92 -51.93 -0.31 0.60 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.83 5.49 -51.93 -0.29 0.54 16 34 H 0.05 0.68 6.15 -51.93 -0.32 0.36 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 1.02 6.24 -51.93 -0.32 0.69 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.59 6.93 -51.93 -0.36 0.23 16 40 H 0.08 1.72 6.29 -51.93 -0.33 1.39 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -31.90 310.10 -6.63 -38.52 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.68 Total: 3.37 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 0.14 Total: -6.52 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.18 Total: -37.05 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.07 Total: -18.17 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.90 -6.63 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335633991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.878 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds